--- a +++ b/man/importVisiumHD.Rd @@ -0,0 +1,43 @@ +% Generated by roxygen2: do not edit by hand +% Please edit documentation in R/import.R +\name{importVisiumHD} +\alias{importVisiumHD} +\title{importVisiumHD} +\usage{ +importVisiumHD( + dir.path, + bin.size = "8", + selected_assay = "Gene Expression", + assay_name = "VisiumHD", + sample_name = NULL, + image_name = "main", + channel_name = "H&E", + inTissue = TRUE, + resolution_level = "lowres", + ... +) +} +\arguments{ +\item{dir.path}{path to Visium output folder} + +\item{bin.size}{bin size of the VisiumHD output (Exp: "2", "8" and "16")} + +\item{selected_assay}{selected assay from Visium} + +\item{assay_name}{the assay name} + +\item{sample_name}{the name of the sample} + +\item{image_name}{the image name of the Visium assay, Default: main} + +\item{channel_name}{the channel name of the image of the Visium assay, Default: H&E} + +\item{inTissue}{if TRUE, only barcodes that are in the tissue will be kept (default: TRUE)} + +\item{resolution_level}{the level of resolution of Visium image: "lowres" (default) or "hires"} + +\item{...}{additional parameters passed to \link{formVoltRon}} +} +\description{ +Importing VisiumHD data +}