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b/man/importVisium.Rd |
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% Generated by roxygen2: do not edit by hand |
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% Please edit documentation in R/import.R |
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\name{importVisium} |
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\alias{importVisium} |
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\title{importVisium} |
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\usage{ |
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importVisium( |
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dir.path, |
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selected_assay = "Gene Expression", |
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assay_name = "Visium", |
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sample_name = NULL, |
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image_name = "main", |
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channel_name = "H&E", |
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inTissue = TRUE, |
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resolution_level = "lowres", |
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... |
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) |
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} |
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\arguments{ |
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\item{dir.path}{path to Visium output folder} |
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\item{selected_assay}{selected assay from Visium} |
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\item{assay_name}{the assay name} |
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\item{sample_name}{the name of the sample} |
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\item{image_name}{the image name of the Visium assay, Default: main} |
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\item{channel_name}{the channel name of the image of the Visium assay, Default: H&E} |
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\item{inTissue}{if TRUE, only barcodes that are in the tissue will be kept (default: TRUE)} |
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\item{resolution_level}{the level of resolution of Visium image: "lowres" (default) or "hires"} |
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\item{...}{additional parameters passed to \link{formVoltRon}} |
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} |
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\description{ |
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Importing Visium data |
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} |