% Generated by roxygen2: do not edit by hand

% Please edit documentation in R/import.R

\name{importGeoMx}

\alias{importGeoMx}

\title{importGeoMx}

\usage{

importGeoMx(

  dcc.path,

  pkc.file,

  summarySegment,

  summarySegmentSheetName,

  assay_name = "GeoMx",

  image = NULL,

  segment_polygons = FALSE,

  ome.tiff = NULL,

  resolution_level = 3,

  image_name = "main",

  ...

)

}

\arguments{

\item{dcc.path}{path to the folder where the dcc files are found}

\item{pkc.file}{path to the pkc file}

\item{summarySegment}{the metadata csv (sep = ";") or excel file, if the file is an excel file, \code{summarySegmentSheetName} should be provided as well.}

\item{summarySegmentSheetName}{the sheet name of the excel file, \code{summarySegment}}

\item{assay_name}{the assay name, default: GeoMx}

\item{image}{the reference morphology image of the GeoMx assay}

\item{segment_polygons}{if TRUE, the ROI polygons are parsed from the OME.TIFF file}

\item{ome.tiff}{the OME.TIFF file of the GeoMx experiment if exists}

\item{resolution_level}{the level of resolution within GeoMx OME-TIFF image, Default: 3}

\item{image_name}{the image name of the Visium assay, Default: main}

\item{...}{additional parameters passed to \link{formVoltRon}}

}

\description{

Import GeoMx data

}