--- a
+++ b/man/importGeoMx.Rd
@@ -0,0 +1,46 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/import.R
+\name{importGeoMx}
+\alias{importGeoMx}
+\title{importGeoMx}
+\usage{
+importGeoMx(
+  dcc.path,
+  pkc.file,
+  summarySegment,
+  summarySegmentSheetName,
+  assay_name = "GeoMx",
+  image = NULL,
+  segment_polygons = FALSE,
+  ome.tiff = NULL,
+  resolution_level = 3,
+  image_name = "main",
+  ...
+)
+}
+\arguments{
+\item{dcc.path}{path to the folder where the dcc files are found}
+
+\item{pkc.file}{path to the pkc file}
+
+\item{summarySegment}{the metadata csv (sep = ";") or excel file, if the file is an excel file, \code{summarySegmentSheetName} should be provided as well.}
+
+\item{summarySegmentSheetName}{the sheet name of the excel file, \code{summarySegment}}
+
+\item{assay_name}{the assay name, default: GeoMx}
+
+\item{image}{the reference morphology image of the GeoMx assay}
+
+\item{segment_polygons}{if TRUE, the ROI polygons are parsed from the OME.TIFF file}
+
+\item{ome.tiff}{the OME.TIFF file of the GeoMx experiment if exists}
+
+\item{resolution_level}{the level of resolution within GeoMx OME-TIFF image, Default: 3}
+
+\item{image_name}{the image name of the Visium assay, Default: main}
+
+\item{...}{additional parameters passed to \link{formVoltRon}}
+}
+\description{
+Import GeoMx data
+}