--- a
+++ b/man/getUMAP.Rd
@@ -0,0 +1,35 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/processing.R
+\name{getUMAP}
+\alias{getUMAP}
+\title{getUMAP}
+\usage{
+getUMAP(
+  object,
+  assay = NULL,
+  data.type = "pca",
+  dims = seq_len(30),
+  umap.key = "umap",
+  overwrite = FALSE,
+  seed = 1
+)
+}
+\arguments{
+\item{object}{a VoltRon object}
+
+\item{assay}{assay name (exp: Assay1) or assay class (exp: Visium, Xenium), see \link{SampleMetadata}. 
+if NULL, the default assay will be used, see \link{vrMainAssay}.}
+
+\item{data.type}{the type of data used to calculate UMAP from: "pca" (default), "raw" or "norm"}
+
+\item{dims}{the number of dimensions extracted from PCA}
+
+\item{umap.key}{the name of the umap embedding, default: umap}
+
+\item{overwrite}{Whether the existing embedding with name 'type' should be overwritten in \link{vrEmbeddings}}
+
+\item{seed}{seed}
+}
+\description{
+calculate UMAP of the VoltRon objects
+}