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b/man/getNicheAssay.Rd |
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% Generated by roxygen2: do not edit by hand |
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% Please edit documentation in R/spatial.R |
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\name{getNicheAssay} |
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\alias{getNicheAssay} |
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\title{getNicheAssay} |
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\usage{ |
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getNicheAssay( |
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object, |
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assay = NULL, |
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label = NULL, |
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graph.type = "delaunay", |
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new_feature_name = "Niche" |
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) |
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} |
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\arguments{ |
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\item{object}{a VoltRon object} |
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\item{assay}{assay name (exp: Assay1) or assay class (exp: Visium, Xenium), see \link{SampleMetadata}. |
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if NULL, the default assay will be used, see \link{vrMainAssay}.} |
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\item{label}{grouping label for Niche definition} |
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\item{graph.type}{the type of graph to determine spatial neighborhood} |
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\item{new_feature_name}{the name of the new feature set created for the niche assay. Default: "Niche"} |
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} |
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\description{ |
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Create Niche Assays |
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} |