--- a +++ b/man/getNicheAssay.Rd @@ -0,0 +1,29 @@ +% Generated by roxygen2: do not edit by hand +% Please edit documentation in R/spatial.R +\name{getNicheAssay} +\alias{getNicheAssay} +\title{getNicheAssay} +\usage{ +getNicheAssay( + object, + assay = NULL, + label = NULL, + graph.type = "delaunay", + new_feature_name = "Niche" +) +} +\arguments{ +\item{object}{a VoltRon object} + +\item{assay}{assay name (exp: Assay1) or assay class (exp: Visium, Xenium), see \link{SampleMetadata}. +if NULL, the default assay will be used, see \link{vrMainAssay}.} + +\item{label}{grouping label for Niche definition} + +\item{graph.type}{the type of graph to determine spatial neighborhood} + +\item{new_feature_name}{the name of the new feature set created for the niche assay. Default: "Niche"} +} +\description{ +Create Niche Assays +}