--- a
+++ b/man/getHotSpotAnalysis.Rd
@@ -0,0 +1,38 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/spatial.R
+\name{getHotSpotAnalysis}
+\alias{getHotSpotAnalysis}
+\title{getHotSpotAnalysis}
+\usage{
+getHotSpotAnalysis(
+  object,
+  assay = NULL,
+  method = "Getis-Ord",
+  features,
+  graph.type = "delaunay",
+  alpha.value = 0.01,
+  norm = TRUE,
+  verbose = TRUE
+)
+}
+\arguments{
+\item{object}{a VoltRon object}
+
+\item{assay}{assay name (exp: Assay1) or assay class (exp: Visium, Xenium), see \link{SampleMetadata}. 
+if NULL, the default assay will be used, see \link{vrMainAssay}.}
+
+\item{method}{the statistical method of conducting hot spot analysis. Default is "Getis-Ord"}
+
+\item{features}{a set of features to be visualized, either from \link{vrFeatures} of raw or normalized data or columns of the \link{Metadata}.}
+
+\item{graph.type}{the type of graph to determine spatial neighborhood}
+
+\item{alpha.value}{the alpha value for the hot spot analysis test. Default is 0.01}
+
+\item{norm}{if TRUE, the normalized data is used}
+
+\item{verbose}{verbose}
+}
+\description{
+Conduct hot spot detection
+}