|
a |
|
b/man/getFeatures.Rd |
|
|
1 |
% Generated by roxygen2: do not edit by hand |
|
|
2 |
% Please edit documentation in R/allgenerics.R, R/processing.R |
|
|
3 |
\name{getFeatures} |
|
|
4 |
\alias{getFeatures} |
|
|
5 |
\alias{getFeatures,VoltRon-method} |
|
|
6 |
\alias{getFeatures,vrAssay-method} |
|
|
7 |
\alias{getFeatures,vrAssayV2-method} |
|
|
8 |
\title{getFeatures} |
|
|
9 |
\usage{ |
|
|
10 |
getFeatures(object, ...) |
|
|
11 |
|
|
|
12 |
\S4method{getFeatures}{VoltRon}(object, assay = NULL, max.count = 1, n = 3000) |
|
|
13 |
|
|
|
14 |
\S4method{getFeatures}{vrAssay}(object, max.count = 1, n = 3000) |
|
|
15 |
|
|
|
16 |
\S4method{getFeatures}{vrAssayV2}(object, max.count = 1, n = 3000) |
|
|
17 |
} |
|
|
18 |
\arguments{ |
|
|
19 |
\item{object}{a VoltRon or vrAssay object.} |
|
|
20 |
|
|
|
21 |
\item{...}{arguments passed to other methods.} |
|
|
22 |
|
|
|
23 |
\item{assay}{assay name (exp: Assay1) or assay class (exp: Visium, Xenium), see \link{SampleMetadata}. |
|
|
24 |
if NULL, the default assay will be used, see \link{vrMainAssay}.} |
|
|
25 |
|
|
|
26 |
\item{max.count}{maximum count (across spatial points) for low count filtering} |
|
|
27 |
|
|
|
28 |
\item{n}{the top number of variable features} |
|
|
29 |
} |
|
|
30 |
\description{ |
|
|
31 |
Get variable features of assays |
|
|
32 |
} |