--- a
+++ b/man/getDeconvolution.Rd
@@ -0,0 +1,38 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/deconvolution.R
+\name{getDeconvolution}
+\alias{getDeconvolution}
+\title{getDeconvolution}
+\usage{
+getDeconvolution(
+  object,
+  assay = NULL,
+  features = NULL,
+  sc.object,
+  sc.assay = "RNA",
+  sc.cluster = "seurat_clusters",
+  method = "RCTD",
+  ...
+)
+}
+\arguments{
+\item{object}{a VoltRon object}
+
+\item{assay}{assay name (exp: Assay1) or assay class (exp: Visium, Xenium), see \link{SampleMetadata}. 
+if NULL, the default assay will be used, see \link{vrMainAssay}.}
+
+\item{features}{features}
+
+\item{sc.object}{Seurat Object}
+
+\item{sc.assay}{assay of the Seurat Object used for the single cell data reference}
+
+\item{sc.cluster}{metadata column variable used for the single cell data reference}
+
+\item{method}{Deconvolution method, RCTD (spot), SPOTlight (spot), MuSiC (ROI)}
+
+\item{...}{additional parameters passed to method specific functions, e.g. RCTD, MuSiC.}
+}
+\description{
+Calculate deconvolution of spots and ROIs
+}