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b/man/formVoltRon.Rd |
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% Generated by roxygen2: do not edit by hand |
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% Please edit documentation in R/objects.R |
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\name{formVoltRon} |
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\alias{formVoltRon} |
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\title{formVoltRon} |
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\usage{ |
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formVoltRon( |
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data = NULL, |
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metadata = NULL, |
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image = NULL, |
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coords, |
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segments = list(), |
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sample.metadata = NULL, |
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main.assay = NULL, |
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assay.type = "cell", |
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params = list(), |
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sample_name = NULL, |
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layer_name = NULL, |
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image_name = NULL, |
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feature_name = NULL, |
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project = NULL, |
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version = "v2", |
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... |
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) |
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} |
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\arguments{ |
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\item{data}{the feature matrix of spatialpoints} |
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\item{metadata}{a metadata object of class \link{vrMetadata}} |
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\item{image}{a singelton or list of images as magick-image objects} |
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\item{coords}{the coordinates of the spatial points} |
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\item{segments}{the list of segments each associated with a spatial point} |
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\item{sample.metadata}{a data frame of the sample metadata, see \link{SampleMetadata}} |
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\item{main.assay}{the name of the main assay} |
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\item{assay.type}{the type of the assay (tile, molecule, cell, spot or ROI)} |
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\item{params}{additional parameters} |
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\item{sample_name}{the name of the sample} |
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\item{layer_name}{the name of the layer} |
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\item{image_name}{the name/key of the image} |
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\item{feature_name}{the name/key of the feature set} |
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\item{project}{project name} |
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\item{version}{the assay version, V1 or V2} |
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\item{...}{additional parameters passed to \link{formAssay}} |
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} |
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\description{ |
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Create a VoltRon object |
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} |