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b/man/formAssay.Rd |
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% Generated by roxygen2: do not edit by hand |
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% Please edit documentation in R/assay.R |
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\name{formAssay} |
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\alias{formAssay} |
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\title{formAssay} |
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\usage{ |
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formAssay( |
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data = NULL, |
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coords, |
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segments = list(), |
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image = NULL, |
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params = list(), |
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type = "ROI", |
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name = "Assay1", |
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main_image = "image_1", |
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main_featureset = NULL, |
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assay_version = "v2", |
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... |
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) |
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} |
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\arguments{ |
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\item{data}{the feature matrix of spatialpoints} |
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\item{coords}{the coordinates of the spatial points} |
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\item{segments}{the list of segments each associated with a spatial point (optional)} |
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\item{image}{a singelton or list of images as magick-image objects} |
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\item{params}{additional parameters of the object} |
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\item{type}{the type of the assay (tile, molecule, cell, spot or ROI)} |
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\item{name}{the name of the assay} |
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\item{main_image}{the name of the main_image} |
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\item{main_featureset}{the name of the main_featureset} |
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\item{assay_version}{the assay version} |
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\item{...}{additional arguements passed to \link{formImage}} |
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} |
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\description{ |
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Create a vrAssay (VoltRon assay) object |
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} |