--- a
+++ b/man/combineChannels.Rd
@@ -0,0 +1,76 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/allgenerics.R, R/image.R
+\name{combineChannels}
+\alias{combineChannels}
+\alias{combineChannels,VoltRon-method}
+\alias{combineChannels,vrAssay-method}
+\alias{combineChannels,vrAssayV2-method}
+\alias{combineChannels,vrImage-method}
+\alias{combineChannels,vrSpatial-method}
+\title{combineChannels}
+\usage{
+combineChannels(object, ...)
+
+\S4method{combineChannels}{VoltRon}(
+  object,
+  assay = NULL,
+  name = NULL,
+  reg = FALSE,
+  channels = NULL,
+  colors = NULL,
+  channel_key = "combined"
+)
+
+\S4method{combineChannels}{vrAssay}(
+  object,
+  name = NULL,
+  reg = FALSE,
+  channels = NULL,
+  colors = NULL,
+  channel_key = "combined"
+)
+
+\S4method{combineChannels}{vrAssayV2}(
+  object,
+  name = NULL,
+  reg = FALSE,
+  channels = NULL,
+  colors = NULL,
+  channel_key = "combined"
+)
+
+\S4method{combineChannels}{vrImage}(
+  object,
+  channels = NULL,
+  colors = NULL,
+  channel_key = "combined"
+)
+
+\S4method{combineChannels}{vrSpatial}(
+  object,
+  channels = NULL,
+  colors = NULL,
+  channel_key = "combined"
+)
+}
+\arguments{
+\item{object}{a VoltRon, vrAssay or vrSpatial object.}
+
+\item{...}{arguments passed to other methods.}
+
+\item{assay}{assay name (exp: Assay1) or assay class (exp: Visium, Xenium), see \link{SampleMetadata}. 
+if NULL, the default assay will be used, see \link{vrMainAssay}.}
+
+\item{name}{the name of the image}
+
+\item{reg}{TRUE if registered coordinates of the main image (\link{vrMainSpatial}) is requested}
+
+\item{channels}{the name of the channel associated with the image}
+
+\item{colors}{the colors associated with each channel}
+
+\item{channel_key}{the name of the new channel name}
+}
+\description{
+Combining channels into novel channels of the same image
+}