--- a +++ b/DESCRIPTION @@ -0,0 +1,100 @@ +Package: VoltRon +Type: Package +Title: VoltRon for Spatial Omics Data Integration and Analysis +Version: 0.2.0 +Depends: R (>= 4.3.0) +Author@R: + person("Artür", "Manukyan", + role=c("aut", "cre"), + email="artur-man@hotmail.com", + comment=c(ORCID="0000-0002-0441-9517")), + person("Ella", "Bahry", + role=c("aut")), + person("Raj Prateek", "Rai", + role=c("aut")), + person("Wei-che", "Ko", + role=c("aut")), + person("Markus", "Landthaler", + role=c("aut")), + person("Altuna", "Akalin", + role=c("aut")) +Author: Artür Manukyan, Ella Bahry, Raj Prateek Rai, Wei-Che Ko, Markus Landthaler, Altuna Akalin +Maintainer: Artür Manukyan <artur-man@hotmail.com> +Description: VoltRon is a spatial omic analysis toolbox for multi-omics integration using spatial image registration. VoltRon is capable of analyzing multiple types and modalities of spatially-aware datasets. VoltRon visualizes and analyzes regions of interests (ROIs), spots, cells, molecules and event tiles. +License: MIT + file LICENSE +SystemRequirements: OpenCV 4.8 (or higher): libopencv-dev (Debian, Ubuntu) or opencv-devel (Fedora) +Encoding: UTF-8 +RoxygenNote: 7.3.2 +biocViews: +Imports: methods, grDevices, data.table, Matrix, S4Arrays, ids, RcppAnnoy, + RANN, igraph, dplyr, ggplot2, ggrepel, ggpubr, rjson, magick, + EBImage, sp, rlang, shiny, shinyjs, stringr, irlba, uwot, RCDT +LinkingTo: Rcpp, RcppArmadillo (>= 0.4) +Collate: + 'RcppExports.R' + 'zzz.R' + 'allgenerics.R' + 'allclasses.R' + 'annotation.R' + 'assay.R' + 'auxiliary.R' + 'clustering.R' + 'conversion.R' + 'data.R' + 'deconvolution.R' + 'differentialexpression.R' + 'image.R' + 'import.R' + 'integration.R' + 'interactive.R' + 'io.R' + 'metadata.R' + 'objects.R' + 'processing.R' + 'registration.R' + 'sample.R' + 'spatial.R' + 'visualization.R' +Suggests: + testthat (>= 3.0.0), + S4Vectors, + DelayedArray, + rhdf5, + basilisk, + reticulate, + RBioFormats, + BPCells, + HDF5Array, + pizzarr, + ZarrArray, + HDF5DataFrame, + ZarrDataFrame, + ImageArray, + viridisLite, + SpatialExperiment, + SingleCellExperiment, + SummarizedExperiment, + Seurat, + SeuratObject, + Giotto, + DESeq2, + MuSiC, + spacexr, + XML, + ComplexHeatmap, + xlsx, + reshape2, + tiledb, + tiledbsc, + arrow, + vitessceR, + geojsonR, + circlize, + rstudioapi, + ggforce, + ggnewscale, + anndataR, + anndata, +Config/testthat/edition: 3 +LazyData: true +LazyDataCompression: gzip