destination: docs

authors:
  Shixiang Wang:
    href: https://shixiangwang.github.io/

reference:
  - title: Standard dataset query and download pipeline
    desc: Select, query, download and load datasets.
    contents:
    - XenaData
    - XenaScan
    - XenaGenerate
    - XenaFilter
    - XenaBrowse
    - XenaQuery
    - XenaDownload
    - XenaPrepare
  - title: Download a subset of dataset
    desc: Download a subset of dataset for target analysis.
    contents:
    - fetch_dense_values
    - fetch_dataset_samples
    - fetch_dataset_identifiers
    - fetch
  - title: One-click download function
    desc: Download datasets by setting options in one function.
    contents:
    - downloadTCGA
    - getTCGAdata
    - availTCGA
    - showTCGA
  - title: Utility
    desc: Useful functions.
    contents:
    - XenaDataUpdate
    - hosts
    - cohorts
    - datasets
    - samples
    - has_probeMap
    - XenaQueryProbeMap
  - title: Helpers
    desc: Helper functions.
    contents:
    - xena_default_hosts
    - to_snake
  - title: Class
    desc: Class and related function.
    contents:
    - XenaHub-class
    - XenaHub