Copy number variations (gene-level) in the PCGP project public data

{"longTitle":"Disease and data source in the PCGP project public data","cohort":"St Jude PCGP pan-cancer","url":"http://explorepcgp.org/, http://www.ncbi.nlm.nih.gov/pubmed/23153540, http://www.ncbi.nlm.nih.gov/pubmed/22237106, http://www.ncbi.nlm.nih.gov/pubmed/23334668, http://www.ncbi.nlm.nih.gov/pubmed/22722829, http://www.ncbi.nlm.nih.gov/pubmed/23583981, http://www.ncbi.nlm.nih.gov/pubmed/22237022, http://www.ncbi.nlm.nih.gov/pubmed/24332040","dataSubType":"phenotype","label":"Disease and data source","name":"StJudePCGP/pan-pcgp_phenotype","wrangling_procedure":"Data of all disease types is downloaded from http://explorepcgp.org/, convert to tab-separated matrix format, loaded to UCSC Xena Hub.","type":"clinicalMatrix","version":"2015-09-29","description":"Disease types and data sources in the PCGP project public data collection. The pan-cancer PCGP cohort includes tumors of Acute megakaryoblastic leukemia, T-cell precursor acute lymphoblastic leukaemia, Hypodiploid Acute Lymphoblastic Leukemia, Medulloblastoma, Low-Grade Gliomas, Retinoblastoma, and Rhabdomyosarcoma."}

Disease and data source in the PCGP project public data

{"longTitle":"Tier1 mutations in the PCGP project public data","cohort":"St Jude PCGP pan-cancer","url":"http://explorepcgp.org/, http://www.ncbi.nlm.nih.gov/pubmed/23153540, http://www.ncbi.nlm.nih.gov/pubmed/22237106, http://www.ncbi.nlm.nih.gov/pubmed/23334668, http://www.ncbi.nlm.nih.gov/pubmed/22722829, http://www.ncbi.nlm.nih.gov/pubmed/23583981, http://www.ncbi.nlm.nih.gov/pubmed/22237022, http://www.ncbi.nlm.nih.gov/pubmed/24332040","dataSubType":"somatic mutation (SNP and small INDELs)","label":"Tier1 mutations","name":"StJudePCGP/pan-pcgp_snv-indel_tier1.txt","wrangling_procedure":"Data (SNV Tier1, hg19) of all disease types is downloaded from http://explorepcgp.org/, convert to Xena Positional Mutation format, loaded to UCSC Xena Hub.","assembly":"hg19","type":"mutationVector","version":"2015-09-29","description":"St Jude PCGP pan-cancer tier 1 mutations. The pan-cancer PCGP cohort includes tumors of Acute megakaryoblastic leukemia, T-cell precursor acute lymphoblastic leukaemia, Hypodiploid Acute Lymphoblastic Leukemia, Medulloblastoma, Low-Grade Gliomas, Retinoblastoma, and Rhabdomyosarcoma."}