TCGA lymphoid neoplasm diffuse large B-cell lymphoma (DLBC) gene-level nonsilent somatic mutation (bcm automated)

TCGA lymphoid neoplasm diffuse large B-cell lymphoma (DLBC) DNA methylation (HumanMethylation450)

{"longTitle":"TCGA lymphoid neoplasm diffuse large B-cell lymphoma (DLBC) copy number gistic2 estimate","cohort":"TCGA Large B-cell Lymphoma (DLBC)","url":"http://gdac.broadinstitute.org/runs/analyses__2016_01_28/data/DLBC/20160128/","dataSubType":"copy number (gene-level)","security":"public","label":"gistic2","tags":["cancer"],"path":"data/public/TCGA/DLBC/Gistic2_CopyNumber_Gistic2_all_data_by_genes","anatomical_origin":["Lymphatic tissue"],"name":"TCGA.DLBC.sampleMap/Gistic2_CopyNumber_Gistic2_all_data_by_genes","dataproducer":"TCGA FIREHOSE pipeline","wrangling_procedure":"FIREHOSE data download from TCGA DCC, processed at UCSC into xena repository","sample_type":["tumor"],"redistribution":true,"groupTitle":"TCGA diffuse large B-cell lymphoma","type":"genomicMatrix","wrangler":"xena TCGAscript CopyNumber_Gistic2 processed on 2017-09-08","version":"2017-09-08","unit":"Gistic2 copy number","primary_disease":"diffuse large B-cell lymphoma","description":"TCGA lymphoid neoplasm diffuse large B-cell lymphoma (DLBC) gene-level copy number variation (CNV) estimated using the GISTIC2 method.<br><br> Copy number profile was measured experimentally using whole genome microarray at a TCGA genome characterization center. Subsequently, TCGA FIREHOSE pipeline applied GISTIC2 method to produce segmented CNV data, which was then mapped to genes to produce gene-level estimates. Genes are mapped onto the human genome coordinates using UCSC xena HUGO probeMap. Reference to GISTIC2 method PMID:21527027.<br><br>"}

TCGA lymphoid neoplasm diffuse large B-cell lymphoma (DLBC) copy number gistic2 estimate

{"cohort":"TCGA Large B-cell Lymphoma (DLBC)","clinicalfeature":"TCGA.DLBC.sampleMap/DLBC_clinicalFeature","url":"https://tcga-data.nci.nih.gov/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/dlbc/bcr/","label":"Phenotypes","version":"2016-04-27","dataSubType":"phenotype","type":"clinicalMatrix","name":"TCGA.DLBC.sampleMap/DLBC_clinicalMatrix"}