{"name":"gencode.v23.annotation.transcript.probemap","type":"probeMap","version":"2017-05-08","assembly":"hg38","xdb":"genecode Release 23 (GRCh38.p3)","url":"ftp://ftp.sanger.ac.uk/pub/gencode/Gencode_human/release_23/gencode.v23.annotation.gtf.gz","note":"comprehensive annotation, transcript only"}

{"cohort":"human brain transcriptome (Darmanis PNAS 2015)","url":"https://www.ncbi.nlm.nih.gov/pubmed/26060301","probeMap":"gencode.v23.annotation.transcript.probemap","dataSubType":"single cell RNAseq transcript expression","citation":"Proc Natl Acad Sci U S A. 2015 Jun 9;112(23):7285-90. doi: 10.1073/pnas.1507125112. Epub 2015 May 18.","label":"transcript expression (kallisto)","articletitle":"A survey of human brain transcriptome diversity at the single cell level","name":"DarmanisPNAS2015/transpose_kallisto_cell_by_isoform.tsv","dataproducer":"Darmanis S, Sloan SA, Zhang Y, Enge M1, Caneda C, Shuer LM, Hayden Gephart MG, Barres BA, Quake SR.","type":"genomicMatrix","unit":"est_count","colnormalization":"log2(x)","pmid":26060301}

single cell RNAseq transcript expression

{"cohort":"human brain transcriptome (Darmanis PNAS 2015)","url":"https://www.ncbi.nlm.nih.gov/pubmed/26060301","probeMap":"gencode.v23.annotation.transcript.probemap","dataSubType":"single cell RNAseq transcript expression","citation":"Proc Natl Acad Sci U S A. 2015 Jun 9;112(23):7285-90. doi: 10.1073/pnas.1507125112. Epub 2015 May 18.","label":"transcript expression (RSEM)","articletitle":"A survey of human brain transcriptome diversity at the single cell level","name":"DarmanisPNAS2015/transpose_rsem_cell_by_isoform.tsv","dataproducer":"Darmanis S, Sloan SA, Zhang Y, Enge M1, Caneda C, Shuer LM, Hayden Gephart MG, Barres BA, Quake SR.","type":"genomicMatrix","unit":"expected_count","colnormalization":"log2(x)","pmid":26060301}

{"cohort":"human brain transcriptome (Darmanis PNAS 2015)","url":"https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE67835, https://www.ncbi.nlm.nih.gov/pubmed/26060301","dataSubType":"phenotype","citation":"Proc Natl Acad Sci U S A. 2015 Jun 9;112(23):7285-90. doi: 10.1073/pnas.1507125112. Epub 2015 May 18.","label":"phenotype","articletitle":"A survey of human brain transcriptome diversity at the single cell level","name":"DarmanisPNAS2015/quakeBrainGeo.tsv","dataproducer":"Darmanis S, Sloan SA, Zhang Y, Enge M1, Caneda C, Shuer LM, Hayden Gephart MG, Barres BA, Quake SR.","type":"clinicalMatrix","pmid":26060301}