TCGA uterine corpus endometrioid carcinoma (UCEC) segmented copy number (delete germline cnv)

{"cgdataversion":1,"owner":"TCGA","longTitle":"TCGA uterine corpus endometrioid carcinoma (UCEC) miRNA mature strand expression by RNAseq (IlluminaHiseq)","cohort":"TCGA Endometrioid Cancer (UCEC)","url":"https://tcga-data.nci.nih.gov/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/ucec/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/","dataSubType":"miRNA mature strand expression RNAseq","security":"public","label":"IlluminaHiseq","tags":["cancer","uterus"],"path":"data/public/TCGA/UCEC/miRNA_HiSeq_gene","anatomical_origin":["Endometrium"],"name":"TCGA.UCEC.sampleMap/miRNA_HiSeq_gene","dataproducer":"British Columbia Cancer Agency TCGA genome characterization center","wrangling_procedure":"Level_3 Data (file names: *.isoform.quantification.txt) download from TCGA DCC, for each sample, all isoform expression for the same miRNA mature strand are added together, log2(total_RPM +1) transformed, and deposited at UCSC into Xena repository.","sample_type":["tumor"],"redistribution":true,"domain":"TCGA","type":"genomicMatrix","wrangler":"cgData TCGAscript miRNAseq processed on 2017-09-08","version":"2017-09-08","gdata_tags":["transcription","miRNA"],"unit":"log2(RPM+1)","primary_disease":"uterine corpus endometrioid carcinoma","platform":"IlluminaHiSeq_miRNASeq","colnormalization":true}

TCGA uterine corpus endometrioid carcinoma (UCEC) miRNA mature strand expression by RNAseq (IlluminaHiseq)

{"owner":"TCGA","longTitle":"TCGA uterine corpus endometrioid carcinoma (UCEC) gene-level non-silent somatic mutation (pancan awg)","cohort":"TCGA Endometrioid Cancer (UCEC)","url":"https://www.synapse.org/#!Synapse:syn1729383","dataSubType":"somatic non-silent mutation (gene-level)","security":"public","label":"PANCAN AWG","tags":["cancer","uterus"],"path":"data/public/TCGA/UCEC/mutation","anatomical_origin":["Endometrium"],"name":"TCGA.UCEC.sampleMap/mutation","dataproducer":"TCGA PANCAN AWG","wrangling_procedure":"TCGA PANCAN strictly filtered maf files (file names: *_cleaned_filtered.maf) download from Synapse, processed into gene by sample matrix at UCSC into Xena repository","sample_type":["tumor"],"redistribution":true,"domain":"TCGA","groupTitle":"TCGA uterine corpus endometrioid carcinoma","type":"genomicMatrix","wrangler":"Xena TCGAscript mutationMatrix processed on 2017-09-08","version":"2017-09-08","unit":"binary non-silent mutation","primary_disease":"uterine corpus endometrioid carcinoma","description":"TCGA uterine corpus endometrioid carcinoma (UCEC) somatic mutation data. Red (=1) indicates that a non-silent somatic mutation (nonsense, missense, frame-shif indels, splice site mutations, stop codon readthroughs) was identified in the protein coding region of a gene, or any mutation identified in a non-coding gene. White (=0) indicates that none of the above mutation calls were made in this gene for the specific sample.<br><br>Somatic mutations calls (even on the same tumor DNA extract) are affected by many factors including library prep, sequencing process, read mapping method, reference genome used, genome annotation, calling algorithms, and ad-hoc pre/postprocessing such as black list genes, target selection regions, and black list samples. This dataset is the best effort made by the TCGA PANCANCER Analysis Working Group. Raw PANCAN mutation data can be downloaded at the url site shown below.<br><br>"}