{"cohort":"TCGA TARGET GTEx","probeMap":"probeMap/gencode.v23.annotation.transcript.probemap","dataSubType":"transcript expression RNAseq","label":"RSEM tpm","name":"TcgaTargetGtex_rsem_isoform_tpm","dataproducer":"UCSC TOIL RNA-seq recompute","wrangling_procedure":"Data (file names: *.rsem_isoforms.results) are downloaded, tpm values are extracted, log2(x+0.001) transformed, and combined.","type":"genomicMatrix","version":"2016-09-02","unit":"log2(tpm+0.001)","description":"TCGA TARGET GTEx transcript expression by RSEM using UCSC TOIL RNA-seq recompute"}

{"cohort":"TCGA TARGET GTEx","probeMap":"probeMap/gencode.v23.annotation.transcript.probemap","dataSubType":"transcript expression RNAseq","label":"RSEM isoform percentage","name":"TcgaTargetGtex_rsem_isopct","dataproducer":"UCSC TOIL RNA-seq recompute","wrangling_procedure":"Data (file names: *.rsem_isoforms.results) are downloaded, IsoPct values are extracted and combined.","type":"genomicMatrix","version":"2016-09-02","unit":"IsoPct","description":"TCGA TARGET GTEx transcript expression by RSEM using UCSC TOIL RNA-seq recompute"}

{"name":"pancanMiRs_EBadjOnProtocolPlatformWithoutRepsWithUnCorrectMiRs_08_04_16.xena","cohort":"TCGA Pan-Cancer (PANCAN)","type":"genomicMatrix","unit":"log2(norm_value+1)","label":"Batch effects normalized miRNA data","dataSubType":"miRNA mature strand expression","url":"https://www.synapse.org/#!Synapse:syn6171109, https://www.synapse.org/#!Synapse:syn7201053","version":"2016-12-29"}

{"name":"mc3.v0.2.8.PUBLIC.xena","cohort":"TCGA Pan-Cancer (PANCAN)","type":"mutationVector","assembly":"hg19","label":"MC3 public version","dataSubType":"somatic mutation (SNP and INDEL)","url":"https://www.synapse.org/#!Synapse:syn7214402/wiki/405297, https://www.synapse.org/#!Synapse:syn7824274","version":"2016-12-29","wrangling_procedure":"downlaod mc3.v0.2.8.PUBLIC.maf.gz, only kept mutations with filter=PASS"}

{"name":"probeMap/hugo_gencode_good_hg19_V24lift37_probemap","type":"probeMap","version":"2017-07-25","assembly":"hg19","url":"http://hgdownload.cse.ucsc.edu/goldenPath/hg19/database/wgEncodeGencodeBasicV24lift37.txt.gz","wrangling_procedure":"convert UCSC GB download to start index 1","label":"human hugo gene symbol (hg19)","idtype":"gene"}