{"start_index":1,"cohort":"GDC Pan-Cancer (PANCAN)","url":"https://docs.gdc.cancer.gov/Data/Release_Notes/Data_Release_Notes/#data-release-100, https://api.gdc.cancer.gov/data/","dataSubType":"somatic mutation (SNPs and small INDELs)","label":"SomaticSniper Variant Aggregation and Masking","name":"GDC-PANCAN/Xena_Matrices/GDC-PANCAN.somaticsniper_snv.tsv","dataproducer":"Genomic Data Commons","wrangling_procedure":"Data from different samples is combined into mutationVector; \"Hugo_Symbol\", \"Chromosome\", \"Start_Position\", \"End_Position\", \"Reference_Allele\", \"Tumor_Seq_Allele2\", \"Tumor_Sample_Barcode\", \"HGVSp_Short\" and \"Consequence\" data are renamed accordingly and presented; \"dna_vaf\" data is added and is calculated by \"t_alt_count\"/\"t_depth\".","assembly":"hg38","type":"mutationVector","wrangler":"Xena GDC ETL script","version":"02-07-2018","platform":"Illumina"}

{"name":"GDC-PANCAN/Xena_Matrices/GDC-PANCAN.survival.tsv","cohort":"GDC Pan-Cancer (PANCAN)","url":"https://docs.gdc.cancer.gov/Data/Release_Notes/Data_Release_Notes/#data-release-90, https://api.gdc.cancer.gov/data/","dataSubType":"phenotype","dataproducer":"Genomic Data Commons","label":"survival data","type":"clinicalMatrix","wrangler":"Xena GDC ETL script","version":"12-14-2017"}

{"start_index":1,"cohort":"GDC Pan-Cancer (PANCAN)","url":"https://docs.gdc.cancer.gov/Data/Release_Notes/Data_Release_Notes/#data-release-100, https://api.gdc.cancer.gov/data/","dataSubType":"somatic mutation (SNPs and small INDELs)","label":"VarScan2 Variant Aggregation and Masking","name":"GDC-PANCAN/Xena_Matrices/GDC-PANCAN.varscan2_snv.tsv","dataproducer":"Genomic Data Commons","wrangling_procedure":"Data from different samples is combined into mutationVector; \"Hugo_Symbol\", \"Chromosome\", \"Start_Position\", \"End_Position\", \"Reference_Allele\", \"Tumor_Seq_Allele2\", \"Tumor_Sample_Barcode\", \"HGVSp_Short\" and \"Consequence\" data are renamed accordingly and presented; \"dna_vaf\" data is added and is calculated by \"t_alt_count\"/\"t_depth\".","assembly":"hg38","type":"mutationVector","wrangler":"Xena GDC ETL script","version":"02-07-2018","platform":"Illumina"}