{"cohort":"TCGA TARGET GTEx","url":"https://www.synapse.org/#!Synapse:syn11288411","probeMap":"probeMap/gencode.v23.annotation.gene.probemap","dataSubType":"gene expression RNAseq","label":"RSEM expected_count (DESeq2 standardized)","name":"TCGA-GTEx-TARGET-gene-exp-counts.deseq2-normalized.log2","wrangling_procedure":"data downlaod from https://www.synapse.org/#!Synapse:syn11288411, log2(x+1) transformed","type":"genomicMatrix","version":"2018-05-08","unit":"log2(expected_count-deseq2+1)","colnormalization":true,"description":"RSEM expected_count output normalized using DESeq2"}

{"name":"TCGA_survival_data","type":"clinicalMatrix","cohort":"TCGA TARGET GTEx","label":"TCGA survival data","dataSubType":"phenotype","url":"http://dev.xenabrowser.net/datapages/?dataset=Survival_SupplementalTable_S1_20171025_xena_sp&host=https%3A%2F%2Fpancanatlas.xenahubs.net&removeHub=https%3A%2F%2Fxena.treehouse.gi.ucsc.edu%3A443","wrangling_procedure":"download data from url, only keep samples with TOIL RNAseq recompute gene or transcript expression data","version":"2018-05-08"}

{"cohort":"TCGA TARGET GTEx","probeMap":"probeMap/gencode.v23.annotation.transcript.probemap","dataSubType":"transcript expression RNAseq","label":"RSEM expected_count","name":"TcgaTargetGtex_expected_count","dataproducer":"UCSC TOIL RNA-seq recompute","wrangling_procedure":"Data (file names: *.rsem_isoforms.results) are downloaded, expected_count values are extracted, log2(x+1) transformed, and combined.","type":"genomicMatrix","version":"2016-09-02","unit":"log2(expected_count+1)","colnormalization":true,"description":"TCGA TARGET GTEx transcript expression by RSEM using UCSC TOIL RNA-seq recompute"}

{"cohort":"TCGA TARGET GTEx","probeMap":"probeMap/gencode.v23.annotation.gene.probemap","dataSubType":"gene expression RNAseq","label":"RSEM expected_count","name":"TcgaTargetGtex_gene_expected_count","dataproducer":"UCSC TOIL RNA-seq recompute","wrangling_procedure":"Data (file names: *.rsem_genes.results) are downloaded, expected_count values are extracted, log2(x+1) transformed, and combined.","type":"genomicMatrix","version":"2016-09-03","unit":"log2(expected_count+1)","colnormalization":true}