TCGA acute myeloid leukemia (LAML) copy number gistic2 estimate

{"start_index":1,"owner":"TCGA","longTitle":"TCGA acute myeloid leukemia (LAML) somatic mutation (wustl_hiseq automated)","cohort":"TCGA Acute Myeloid Leukemia (LAML)","url":"https://tcga-data.nci.nih.gov/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/laml/gsc/genome.wustl.edu/illuminahiseq_dnaseq_automated/mutations/","dataSubType":"somatic mutation (SNPs and small INDELs)","security":"public","label":"wustl_hiseq automated","method":"WashU pipeline","tags":["cancer"],"path":"data/public/TCGA/LAML/mutation_wustl_hiseq","anatomical_origin":["White blood cell"],"name":"TCGA.LAML.sampleMap/mutation_wustl_hiseq","dataproducer":"Genome Institute at Washington University Sequencing Center","wrangling_procedure":"Download .maf file from TCGA DCC, removed any calls from WGS samples, processed into UCSC Xena mutation format, stored in the UCSC Xena repository","sample_type":["tumor"],"assembly":"hg18","redistribution":true,"domain":"TCGA","type":"mutationVector","wrangler":"TCGAscript maf processed on 2017-10-16","version":"2017-10-16","target":"whole exome","gdata_tags":["Genome Institute at Washington University Sequencing Center"],"primary_disease":"acute myeloid leukemia","platform":"IlluminaHiSeq","description":"TCGA acute myeloid leukemia (LAML) somatic mutation data. Sequencing data are generated on a IlluminaHiSeq system. The calls are generated at Genome Institute at Washington University Sequencing Center using the WashU pipeline method."}

TCGA acute myeloid leukemia (LAML) somatic mutation (wustl_hiseq automated)

{"name":"probeMap/hugo_refgene_good_hg18_probemap","type":"probeMap","version":"2017-07-25","assembly":"hg18","url":"http://hgdownload.cse.ucsc.edu/goldenPath/hg18/database/refGene.txt.gz","label":"HUGO: human gene symbol (hg18) e.g. TP53","wrangling_procedure":"convert UCSC GB download to start index 1","userlevel":"basic","idtype":"gene"}

TCGA acute myeloid leukemia (LAML) gene expression by RNAseq (polyA+ IlluminaGA)