{"cgdataversion":1,"owner":"TCGA","longTitle":"TCGA kidney renal papillary cell carcinoma (KIRP) PARADIGM inference activity (RNAseq + CNV)","cohort":"TCGA Kidney Papillary Cell Carcinoma (KIRP)","url":"http://gdac.broadinstitute.org/runs/analyses__2016_01_28/data/KIRP/20160128/","probeMap":"paradigmPathwayV1.probeMap","dataSubType":"PARADIGM pathway activity","security":"public","label":"expression + CNV","tags":["cancer"],"path":"data/public/TCGA/KIRP/Pathway_Paradigm_RNASeq_And_Copy_Number","anatomical_origin":["Kidney"],"name":"TCGA.KIRP.sampleMap/Pathway_Paradigm_RNASeq_And_Copy_Number","dataproducer":"TCGA FIREHOSE pipeline","wrangling_procedure":"FIREHOSE data download from TCGA DCC, processed at UCSC into cgData repository","sample_type":["tumor"],"redistribution":true,"domain":"TCGA","groupTitle":"TCGA kidney papillary cell carcinoma","type":"genomicMatrix","wrangler":"cgData TCGAscript Pathway_Paradigm processed on 2017-09-08","version":"2017-09-08","primary_disease":"kidney papillary cell carcinoma","description":"Broad FireHose automated run results of TCGA kidney renal papillary cell carcinoma (KIRP) gene activity level inferred using the PARADIGM method by integrating RNAseq and copy number data.<br><br>PARADIGM (PMID 20529912) is pathway analysis method to infer tumor sample-specific genetic activities by incorporating curated pathway interactions as well as integrating diverse types of genomic data. The pathways used in this analysis are from <a href=\"http://pid.nci.nih.gov/\" target=\"_blank\"><u>NCI pathway interaction database</u></a>.<br><br>"}

TCGA kidney renal papillary cell carcinoma (KIRP) PARADIGM inference activity (RNAseq + CNV)

{"cgdataversion":1,"owner":"TCGA","longTitle":"TCGA kidney renal papillary cell carcinoma (KIRP) PARADIGM inference activity (array mRNA)","cohort":"TCGA Kidney Papillary Cell Carcinoma (KIRP)","url":"http://gdac.broadinstitute.org/runs/analyses__2016_01_28/data/KIRP/20160128/","probeMap":"paradigmPathwayV1.probeMap","dataSubType":"PARADIGM pathway activity","security":"public","label":"exprssion (array)","tags":["cancer"],"path":"data/public/TCGA/KIRP/Pathway_Paradigm_mRNA","anatomical_origin":["Kidney"],"name":"TCGA.KIRP.sampleMap/Pathway_Paradigm_mRNA","dataproducer":"TCGA FIREHOSE pipeline","wrangling_procedure":"FIREHOSE data download from TCGA DCC, processed at UCSC into cgData repository","sample_type":["tumor"],"redistribution":true,"domain":"TCGA","groupTitle":"TCGA kidney papillary cell carcinoma","type":"genomicMatrix","wrangler":"cgData TCGAscript Pathway_Paradigm processed on 2017-09-08","version":"2017-09-08","primary_disease":"kidney papillary cell carcinoma","description":"Broad FireHose automated run results of TCGA kidney renal papillary cell carcinoma (KIRP) gene activity level inferred using the PARADIGM method on gene expression data from Agilent array alone.<br><br>PARADIGM (PMID 20529912) is pathway analysis method to infer tumor sample-specific genetic activities by incorporating curated pathway interactions as well as integrating diverse types of genomic data. The pathways used in this analysis are from <a href=\"http://pid.nci.nih.gov/\" target=\"_blank\"><u>NCI pathway interaction database</u></a>.<br><br>"}