TCGA ovarian serous cystadenocarcinoma (OV) phospho- or total protein expression by reverse phase protein array (replicate-base normalization)

{"longTitle":"TCGA ovarian serous cystadenocarcinoma (OV) gene expression (AffyU133a array)","cohort":"TCGA Ovarian Cancer (OV)","url":"https://tcga-data.nci.nih.gov/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/ov/cgcc/broad.mit.edu/ht_hg-u133a/transcriptome/","dataSubType":"gene expression array","security":"public","label":"AffyU133a","tags":["cancer"],"path":"data/public/TCGA/OV/HT_HG-U133A","anatomical_origin":["Ovary"],"name":"TCGA.OV.sampleMap/HT_HG-U133A","dataproducer":"Broad Institute of MIT and Harvard University cancer genomic characterization center","wrangling_procedure":"Level_3 Data download from TCGA DCC, no data transformation is carried out.","sample_type":["tumor"],"redistribution":true,"domain":"TCGA","type":"genomicMatrix","wrangler":"xena TCGAscript Affy processed on 2017-09-08","version":"2017-09-08","gdata_tags":["transcription"],"unit":"log2(affy RMA)","primary_disease":"ovarian serous cystadenocarcinoma","platform":"AffyU133a","colnormalization":true,"description":"TCGA ovarian serous cystadenocarcinoma (OV) gene expression data by AffyU133a array.<br><br> The gene expression profile was measured experimentally using the Affymetrix HT Human Genome U133a microarray platform by the Broad Institute of MIT and Harvard University cancer genomic characterization center. Level 3 interpreted level data was downloaded from TCGA data coordination center. This dataset shows the gene-level transcription estimates. Data is in log space. Genes are mapped onto the human genome coordinates using UCSC xena HUGO probeMap.<br><br>In order to more easily view the differential expression between samples, we set the default view to center each gene or exon to zero by independently subtracting the mean of each gene or exon on the fly. Users can view the original non-normalized values by adjusting visualization settings.<br><br>"}