{"cohort":"PCAWG (specimen centric)","url":"https://www.synapse.org/#!Synapse:syn10333255, https://www.synapse.org/#!Synapse:syn10332949, https://www.synapse.org/#!Synapse:syn3354819","probeMap":"expressedPromoterCoordinates.probeMap","dataSubType":"alternative promoter activity","label":"relative promoter activity","name":"relativePromoterActivity.sp","wrangling_procedure":"Promoter to gene mapping are based on : https://www.synapse.org/#!Synapse:syn10332989. Data is mapped to specimen ids.  67989 promoters do not contribute to any transcription in any specimens. 45087 promoters contribute to transcription in at least one sample. All promoter data are kept in the matrix data file. Only the 45087 promoters with any activities are included in the promoter to gene mapping.","type":"genomicMatrix","version":"2017-09-26","unit":"portion of transcription activity of the gene driven by the promoter","description":"A gene has multiple promoters, each drives transcription of a different set of isoforms. The dataset describes their activity driving transcription. Promoter is defined as transcription start site. Values respresent relative promoter activity to each other, range from 0 to 1; and sum to 1 per gene per sample.  1 means 100% transcription activity of the gene is driven by the promoter. 0 means none of the transciption activity is driven from the promoter."}

{"name":"sp_wgs_exclusion_white_gray","url":"http://pancancer.info/data_releases/may2016/pcawg_sample_sheet.v1.4.2016-09-14.tsv, https://wiki.oicr.on.ca/display/PANCANCER/Available+PCAWG+Data#AvailablePCAWGData-May2016Dataset","version":"2017-01-18","cohort":"PCAWG (specimen centric)","label":"exclusion/white/gray lists","description":"PCAWG-TECH group donor whole-genome-sequencing exclusion/white/gray lists","type":"clinicalMatrix","dataSubType":"QC"}

{"name":"survival_sp","url":"https://www.synapse.org/#!Synapse:syn7772065, https://www.synapse.org/#!Synapse:syn4974831","version":"2017-02-25","cohort":"PCAWG (specimen centric)","label":"overall survival","type":"clinicalMatrix","dataSubType":"phenotype"}