{"cohort":"Cancer Cell Line Encyclopedia (Breast)","url":"https://data.broadinstitute.org/ccle_legacy_data/dna_copy_number/CCLE_copynumber_byGene_2013-12-03.txt.gz, https://portals.broadinstitute.org/ccle/data","dataSubType":"copy number","label":"Copy-number values per gene","name":"ccle/CCLE_copynumber_byGene_2013-12-03_breast","wrangling_procedure":"CCLE data, select only breast cancer cell lines","type":"genomicMatrix","version":"2018-05-30","unit":"log(copy number/2)","description":"Affymetrix SNP6.0 arrays. Raw Affymetrix CEL files were converted to a single value for each probe set representing a SNP allele or a copy number probe. Copy numbers were then inferred based upon estimating probe set specific linear calibration curves, followed by normalization by the most similar HapMap normal samples. Segmentation of normalized log2 ratios (specifically, log2(CN/2)) was performed using the circular binary segmentation (CBS) algorithm. Per-gene value is derived."}

{"name":"ccle/CCLE_DepMap_18Q2_maf_20180502_breast","url":"https://data.broadinstitute.org/ccle/CCLE_DepMap_18Q2_maf_20180502.txt, https://portals.broadinstitute.org/ccle/data","version":"2018-05-30","type":"mutationVector","dataSubType":"somatic mutation (SNPs and small INDELs)","label":"Merged mutation calls (coding region, germline filtered)","assembly":"hg19","cohort":"Cancer Cell Line Encyclopedia (Breast)","wrangling_procedure":"CCLE data, select only breast cancer cell lines"}

somatic mutation (SNPs and small INDELs)

{"name":"ccle/CCLE_NP24.2009_Drug_data_2015.02.24_breast","url":"https://data.broadinstitute.org/ccle_legacy_data/pharmacological_profiling/CCLE_NP24.2009_Drug_data_2015.02.24.csv, https://data.broadinstitute.org/ccle_legacy_data/pharmacological_profiling/CCLE_NP24.2009_profiling_2012.02.20.csv, https://portals.broadinstitute.org/ccle/data","version":"2018-05-30","type":"clinicalMatrix","dataSubType":"phenotype","label":"Pharmacologic profiles for 24 anticancer drugs across 504 CCLE lines","cohort":"Cancer Cell Line Encyclopedia (Breast)","clinicalfeature":"ccle/Drug_data.clinFeature","wrangling_procedure":"CCLE data, select only breast cancer cell lines"}