{"longTitle":"Preoperative Chemotherapy Therapy Gene Expression (Hess K. et al. JCO 2006)","cohort":"Breast Cancer (Hess 2006)","url":"http://www.ncbi.nlm.nih.gov/pubmed/16896004","probeMap":"probeMap/affyU133_ucscGenomeBrowser_hg18.probeMap","dataSubType":"gene expression","citation":"J Clin Oncol. 2006 Sep 10;24(26):4236-44. Epub 2006 Aug 8.","label":"Hess Chemo Gene Exp","articletitle":"Pharmacogenomic predictor of sensitivity to preoperative chemotherapy with paclitaxel and fluorouracil, doxorubicin, and cyclophosphamide in breast cancer.","tags":["cancer"],"anatomical_origin":["Breast"],"name":"Hess2006/lajosJCO2006_genomicMatrix","dataproducer":"Hess KR, Anderson K, Symmans WF, Valero V, Ibrahim N, Mejia JA, Booser D, Theriault RL, Buzdar AU, Dempsey PJ, Rouzier R, Sneige N, Ross JS, Vidaurre T, Gomez HL, Hortobagyi GN, Pusztai L.","wrangling_procedure":null,"sample_type":["tumor"],"type":"genomicMatrix","wrangler":"Zack Sanborn","version":"2011-11-01","gdata_tags":["transcription","mRNA"],"primary_disease":"breast cancer"}

Preoperative Chemotherapy Therapy Gene Expression (Hess K. et al. JCO 2006)

{"cohort":"Breast Cancer (Hess 2006)","url":"http://www.ncbi.nlm.nih.gov/pubmed/16896004","dataSubType":"phenotype","label":"Phenotypes","tags":["cancer"],"name":"Hess2006/lajosJCO2006_public_clinicalMatrix","clinicalfeature":"Hess2006/lajosJCO2006_public_clinicalFeature","type":"clinicalMatrix","wrangler":"Zack Sanborn","version":"2011-11-11"}

{"longTitle":"TP53 Gene Expression (Miller et al. 2005)","cohort":"Breast Cancer (Miller 2005)","url":"http://www.ncbi.nlm.nih.gov/pubmed/16141321","probeMap":"probeMap/affyU133_ucscGenomeBrowser_hg18.probeMap","dataSubType":"gene expression","citation":"Proc Natl Acad Sci U S A 2005 Sep 20;102(38):13550-5","label":"Miller TP53 Gene Exp","articletitle":"An expression signature for p53 status in human breast cancer predicts mutation status, transcriptional effects, and patient survival.","tags":["cancer"],"anatomical_origin":["Breast"],"name":"miller2005_public/miller2005_genomicMatrix","dataproducer":"Miller LD, Smeds J, George J, Vega VB, Vergara L, Ploner A, Pawitan Y, Hall P, Klaar S, Liu ET, Bergh J","wrangling_procedure":"Affymetrix U133 .CEL files were downloaded from GEO (<A HREF=\"http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE3494\">link to GEO entry</A>). These were split into A and B platform groups, and processed separately using the affy package in R. The separate results were checked for dissimilar distributions (i.e. batch effects) before merging them. The probe genomic coordinates were obtained from the Affymetrix website, and used to convert the files to bed15 format. ","sample_type":["tumor"],"type":"genomicMatrix","wrangler":"Chris Szeto","version":"2011-11-01","gdata_tags":["transcription","mRNA"],"primary_disease":"breast cancer"}