{"name":"TcgaTargetGTEX_phenotype.txt","type":"clinicalMatrix","version":"2016-09-15","cohort":"TCGA TARGET GTEx","dataSubType":"phenotype","clinicalfeature":"TcgaTargetGTEX_phenotype_clinFeature","label":"TCGA TARGET GTEX selected phenotypes"}

{"cohort":"TCGA TARGET GTEx","probeMap":"probeMap/gencode.v23.annotation.gene.probemap","dataSubType":"gene expression RNAseq","label":"RSEM fpkm","name":"TcgaTargetGtex_rsem_gene_fpkm","dataproducer":"UCSC TOIL RNA-seq recompute","wrangling_procedure":"Data (file names: *.rsem_genes.results) are downloaded, fpkm values are extracted, log2(x+0.001) transformed, and combined.","type":"genomicMatrix","version":"2016-09-03","unit":"log2(fpkm+0.001)"}

{"cohort":"TCGA TARGET GTEx","probeMap":"probeMap/gencode.v23.annotation.gene.probemap","dataSubType":"gene expression RNAseq","label":"RSEM tpm","name":"TcgaTargetGtex_rsem_gene_tpm","dataproducer":"UCSC TOIL RNA-seq recompute","wrangling_procedure":"Data (file names: *.rsem_genes.results) are downloaded, tpm values are extracted, log2(x+0.001) transformed, and combined.","type":"genomicMatrix","version":"2016-09-03","unit":"log2(tpm+0.001)"}

{"cohort":"TCGA TARGET GTEx","probeMap":"probeMap/hugo_gencode_good_hg38_v23comp_probemap","dataSubType":"gene expression RNAseq","label":"RSEM norm_count","name":"TcgaTargetGtex_RSEM_Hugo_norm_count","dataproducer":"UCSC TOIL RNA-seq recompute","wrangling_procedure":"Data (file names: *.rsem.genes.norm_counts.hugo.tab) are log2(x+1) transformed, and combined","type":"genomicMatrix","wrangler":"Xena scripts processed on 2016-04-12","version":"2016-04-12","unit":"log2(norm_count+1)","platform":"ILLUMINA","colnormalization":true,"description":"TCGA TARGET GTEx gene expression by UCSC TOIL RNA-seq recompute"}

{"cohort":"TCGA TARGET GTEx","probeMap":"probeMap/gencode.v23.annotation.transcript.probemap","dataSubType":"transcript expression RNAseq","label":"RSEM fpkm","name":"TcgaTargetGtex_RSEM_isoform_fpkm","dataproducer":"UCSC TOIL RNA-seq recompute","wrangling_procedure":"Data (file names: *.rsem_isoforms.results) are downloaded, fpkm values are extracted, log2(x+0.001) transformed, and combined.","type":"genomicMatrix","version":"2016-09-02","unit":"log2(fpkm+0.001)","description":"TCGA TARGET GTEx transcript expression by RSEM using UCSC TOIL RNA-seq recompute"}