TCGA adrenocortical carcinoma (ACC) somatic mutation (broad curated)

{"longTitle":"TCGA cholangiocarcinoma (CHOL) gene-level nonsilent somatic mutation (bcgsc automated)","cohort":"TCGA Bile Duct Cancer (CHOL)","url":"https://tcga-data.nci.nih.gov/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/chol/gsc/bcgsc.ca/illuminahiseq_dnaseq_automated/mutations/","probeMap":"probeMap/hugo_gencode_good_hg19_V24lift37_probemap","dataSubType":"somatic non-silent mutation (gene-level)","security":"public","label":"bcgsc automated","method":"BCGSC pipeline","tags":["cancer"],"path":"data/public/TCGA/CHOL/mutation_bcgsc_gene","anatomical_origin":["Bile duct"],"name":"TCGA.CHOL.sampleMap/mutation_bcgsc_gene","dataproducer":"Michael Smith Genome Sciences Centre (British Columbia Genome Sciences Centre, BCGSC)","wrangling_procedure":"Download .maf file from TCGA DCC, processed into gene by sample matrix at UCSC, stored in the UCSC Xena repository","sample_type":["tumor"],"redistribution":true,"type":"genomicMatrix","wrangler":"xena TCGAscript maf processed on 2018-01-12","version":"2018-01-12","gdata_tags":["Michael Smith Genome Sciences Centre (British Columbia Genome Sciences Centre, BCGSC)"],"unit":"binary non-silent mutation","primary_disease":"cholangiocarcinoma","platform":"IlluminaHiSeq","description":"TCGA cholangiocarcinoma (CHOL) somatic mutation data.  Sequencing data are generated on a IlluminaHiSeq system. The calls are generated at Michael Smith Genome Sciences Centre (British Columbia Genome Sciences Centre, BCGSC) using the BCGSC pipeline method. <br><br> Red (=1) indicates that a non-silent somatic mutation (nonsense, missense, frame-shif indels, splice site mutations, stop codon readthroughs, change of start codon, inframe indels) was identified in the protein coding region of a gene, or any mutation identified in a non-coding gene. White (=0) indicates that none of the above mutation calls were made in this gene for the specific sample.<br><br>"}

TCGA cholangiocarcinoma (CHOL) gene-level nonsilent somatic mutation (bcgsc automated)