{"longTitle":"Melanoma Gene Expression (Lin et al. 2008)","cohort":"Melanoma (Lin 2008)","url":"http://www.ncbi.nlm.nih.gov/pubmed/18245465","probeMap":"probeMap/affyU133_ucscGenomeBrowser_hg18.probeMap","dataSubType":"gene expression","citation":"Cancer Res. 2008 Feb 1;68(3):664-73.","label":"Lin Gene Exp","articletitle":"Modeling genomic diversity and tumor dependency in malignant melanoma.","tags":["cancer"],"anatomical_origin":["Skin"],"name":"lin2008_public/lin2008Exp_genomicMatrix","dataproducer":"Lin WM, Baker AC, Beroukhim R, Winckler W, Feng W, Marmion JM, Laine E, Greulich H, Tseng H, Gates C, Hodi FS, Dranoff G, Sellers WR, Thomas RK, Meyerson M, Golub TR, Dummer R, Herlyn M, Getz G, Garraway LA.","wrangling_procedure":"Data was obtained from the Broad Institutes public portal (<A HREF=\"http://www.broad.mit.edu/melanoma\">link to portal</A>). Affymetrix HG-U133 probes were then mapped to the genome using mappings obtained from the UCSC table browser.","sample_type":["tumor"],"type":"genomicMatrix","wrangler":"Chris Szeto","version":"2011-11-01","gdata_tags":["transcription","mRNA"],"primary_disease":"melanoma"}

Melanoma Gene Expression (Lin et al. 2008)

{"cohort":"MET500 (expression centric)","dataSubType":"phenotype","citation":"Nature. 2017 Aug 17;548(7667):297-303. doi: 10.1038/nature23306.","label":"sequencing sample metadata","articletitle":"Integrative clinical genomics of metastatic cancer.","name":"MET500/geneExpression/M.meta.plus.txt","dataproducer":"Robinson DR, Wu YM, ... , Cie\u015blik M, Chinnaiyan AM","clinicalfeature":"MET500/geneExpression/M.meta.plus.clinFeature","type":"clinicalMatrix","version":"2018-12-19","pmid":28783718}

{"url":"ftp://ftp.sanger.ac.uk/pub/gencode/Gencode_human/release_23/gencode.v23.annotation.gtf.gz","idtype":"gene","userlevel":"basic","label":"Gene: GENCODE 23 comprehensive (hg38) e.g. ENSG00000223972.5","note":"comprehensive annotation, gene only","name":"probeMap/gencode.v23.annotation.gene.probemap","xdb":"genecode Release 23 (GRCh38.p3)","assembly":"hg38","type":"probeMap","version":"2018-07-13"}