{"name":"ccle/CCLE_sample_info_file_2012-10-18_breast","url":"https://data.broadinstitute.org/ccle_legacy_data/cell_line_annotations/CCLE_sample_info_file_2012-10-18.txt, https://portals.broadinstitute.org/ccle/data","version":"2018-05-30","type":"clinicalMatrix","dataSubType":"phenotype","label":"cell line annotations","cohort":"Cancer Cell Line Encyclopedia (Breast)","wrangling_procedure":"CCLE data, select only breast cancer cell lines"}

{"cohort":"Cancer Cell Line Encyclopedia (CCLE)","url":"https://data.broadinstitute.org/ccle_legacy_data/dna_copy_number/CCLE_copynumber_2013-12-03.seg.txt, https://portals.broadinstitute.org/ccle/data","dataSubType":"copy number","label":"Segmented copy-number profiles Affymetrix SNP6.0 arrays","name":"ccle/CCLE_copynumber_2013-12-03.seg.txt","assembly":"hg19","type":"genomicSegment","version":"2018-05-30","unit":"log(copy number/2)","description":"Affymetrix SNP6.0 arrays. Raw Affymetrix CEL files were converted to a single value for each probe set representing a SNP allele or a copy number probe. Copy numbers were then inferred based upon estimating probe set specific linear calibration curves, followed by normalization by the most similar HapMap normal samples. Segmentation of normalized log2 ratios (specifically, log2(CN/2)) was performed using the circular binary segmentation (CBS) algorithm."}

{"name":"ccle/CCLE_copynumber_byGene_2013-12-03","url":"https://data.broadinstitute.org/ccle_legacy_data/dna_copy_number/CCLE_copynumber_byGene_2013-12-03.txt.gz, https://portals.broadinstitute.org/ccle/data","unit":"log(copy number/2)","version":"2018-05-30","type":"genomicMatrix","dataSubType":"copy number","label":"Copy-number values per gene","cohort":"Cancer Cell Line Encyclopedia (CCLE)","description":"Affymetrix SNP6.0 arrays. Raw Affymetrix CEL files were converted to a single value for each probe set representing a SNP allele or a copy number probe. Copy numbers were then inferred based upon estimating probe set specific linear calibration curves, followed by normalization by the most similar HapMap normal samples. Segmentation of normalized log2 ratios (specifically, log2(CN/2)) was performed using the circular binary segmentation (CBS) algorithm. Per-gene value is derived."}