TCGA breast invasive carcinoma (BRCA) copy number gistic2 estimate

{"start_index":1,"owner":"TCGA","longTitle":"TCGA breast invasive carcinoma (BRCA) somatic mutation (wustl_hiseq automated)","cohort":"TCGA Breast Cancer (BRCA)","url":"https://tcga-data.nci.nih.gov/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/gsc/genome.wustl.edu/illuminahiseq_dnaseq_automated/mutations/","dataSubType":"somatic mutation (SNPs and small INDELs)","security":"public","label":"wustl_hiseq automated","method":"WashU pipeline","tags":["cancer"],"path":"data/public/TCGA/BRCA/mutation_wustl_hiseq","anatomical_origin":["Breast"],"name":"TCGA.BRCA.sampleMap/mutation_wustl_hiseq","dataproducer":"Genome Institute at Washington University Sequencing Center","wrangling_procedure":"Download .maf file from TCGA DCC, removed any calls from WGS samples, processed into UCSC Xena mutation format, stored in the UCSC Xena repository","sample_type":["tumor"],"assembly":"hg19","redistribution":true,"domain":"TCGA","type":"mutationVector","wrangler":"TCGAscript maf processed on 2017-10-17","version":"2017-10-17","target":"whole exome","gdata_tags":["Genome Institute at Washington University Sequencing Center"],"primary_disease":"breast invasive carcinoma","platform":"IlluminaHiSeq","description":"TCGA breast invasive carcinoma (BRCA) somatic mutation data. Sequencing data are generated on a IlluminaHiSeq system. The calls are generated at Genome Institute at Washington University Sequencing Center using the WashU pipeline method."}

TCGA breast invasive carcinoma (BRCA) somatic mutation (wustl_hiseq automated)

{"cgdataversion":1,"owner":"TCGA","longTitle":"TCGA breast invasive carcinoma (BRCA) phospho- or total protein expression by reverse phase protein array (replicate-base normalization)","cohort":"TCGA Breast Cancer (BRCA)","url":"https://www.synapse.org/#!Synapse:syn1759392","dataSubType":"protein expression RPPA","security":"public","label":"RPPA (replicate-base normalization)","tags":["cancer"],"path":"data/public/TCGA/BRCA/RPPA_RBN","anatomical_origin":["Breast"],"name":"TCGA.BRCA.sampleMap/RPPA_RBN","dataproducer":"MDACC","wrangling_procedure":"Data download from https://www.synapse.org/#!Synapse:syn1759392, processed into antibody by sample matrix at UCSC into Xena repository","sample_type":["tumor"],"redistribution":true,"domain":"TCGA","groupTitle":"TCGA breast invasive carcinoma","type":"genomicMatrix","wrangler":"cgData TCGAscript RPPA_RBN processed on 2017-09-08","version":"2017-09-08","unit":"RBN normalized RPPA value","primary_disease":"breast invasive carcinoma","description":"TCGA breast invasive carcinoma (BRCA) protein expression data for 131 proteins, measured by RPPA (reverse phase protein array) technology. These data have been normalized by RBN (replicate-base normalization) method developed by MDACC. Details: https://www.synapse.org/#!Synapse:syn1750330 and http://bioinformatics.mdanderson.org/main/TCPA:Overview.<br><br>"}