{"longTitle":"TCGA pan-cancer DNA methylation (HumanMethylation27K)","cohort":"TCGA Pan-Cancer (PANCAN)","url":"https://tcga-data.nci.nih.gov/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/","probeMap":"probeMap/illuminaMethyl27K_hg18_gpl8490_TCGAlegacy","dataSubType":"DNA methylation","security":"public","label":"DNA methylation (Methylation27K)","tags":["cancer","non-small cell lung cancer","gastric cancer","pancancer","Adrenal gland","Esophagus","Rectum","Endometrium","Brian","Head and Neck region","Thymus","Lung","Blood","Soft tissue","Bone","Stomach","Colon and Rectum","Prostate","Breast","Ovary","Kidney","Lymphatic tissue","Brain","Thyroid Gland","Bladder","Paraganglia","Cervix","Uterus","Liver","Bile duct","Eye","Skin","Colon","Testis","Lining of body cavities","White blood cell","Pancreas"],"path":"/inside/home/jzhu/cgDataJing/TCGAscripts/preFreezeCAVM/TCGA/PANCAN/HumanMethylation27","anatomical_origin":"","name":"TCGA.PANCAN.sampleMap/HumanMethylation27","dataproducer":"UCSC Xena team","wrangling_procedure":"Data is combined from all TCGA cohorts and deposited into UCSC Xena repository","sample_type":["tumor"],"redistribution":true,"type":"genomicMatrix","version":"2016-08-16","unit":"beta value","primary_disease":"cancer","description":"TCGA pan-cancer DNA methylation 27K array beta values,compiled by combining available data from all TCGA cohorts. DNA methylation profile was measured experimentally using the Illumina Infinium HumanMethylation27 platform.<br><br>"}

TCGA pan-cancer DNA methylation (HumanMethylation27K)

{"longTitle":"TCGA pan-cancer gene-level copy number (gistic2)","cohort":"TCGA Pan-Cancer (PANCAN)","url":"https://tcga-data.nci.nih.gov/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/","dataSubType":"copy number (gene-level)","security":"public","label":"gene-level copy number (gistic2)","tags":["cancer","non-small cell lung cancer","gastric cancer","pancancer","Adrenal gland","Esophagus","Rectum","Endometrium","Brian","Head and Neck region","Thymus","Lung","Blood","Soft tissue","Bone","Stomach","Colon and Rectum","Prostate","Breast","Ovary","Kidney","Lymphatic tissue","Brain","Thyroid Gland","Bladder","Paraganglia","Cervix","Uterus","Liver","Bile duct","Eye","Skin","Colon","Testis","Lining of body cavities","White blood cell","Pancreas"],"anatomical_origin":"","name":"TCGA.PANCAN.sampleMap/Gistic2_CopyNumber_Gistic2_all_data_by_genes","dataproducer":"UCSC Xena team","wrangling_procedure":"Data is combined from all TCGA cohorts and deposited into UCSC Xena repository","sample_type":["tumor"],"redistribution":true,"type":"genomicMatrix","version":"2016-08-16","unit":"Gistic2 copy number","primary_disease":"cancer","description":"TCGA pan-cancer gene-level copy number variation (CNV) estimated using the GISTIC2 method, compiled using data from all TCGA cohorts. Copy number was measured experimentally using whole genome microarray at Broad TCGA genome characterization center. Subsequently, TCGA FIREHOSE pipeline applied GISTIC2 method to produce segmented CNV data, which was then mapped to genes to produce gene-level estimates. Gistic2 data from all TCGA cohorts are combined to produce this dataset. Reference to GISTIC2 method PMID:21527027.<br><br>"}