{"longTitle":"Child T-ALL SNP6 CGH (Mullighan et al. 2008)","cohort":"Acute lymphoblastic leukemia (Mullighan 2008)","url":"http://www.ncbi.nlm.nih.gov/pubmed/19039135","probeMap":"probeMap/probesAffySNP6","dataSubType":"copy number","citation":"Science 2008 Nov 28;322(5906):1377-80","label":"Mullighan CGH SNP6","articletitle":"Genomic analysis of the clonal origins of relapsed acute lymphoblastic leukemia","tags":["white blood cell","cancer"],"anatomical_origin":["Blood"],"name":"mullighan2008_public/mullighan2008_SNP6_genomicMatrix","dataproducer":"Mullighan CG, Phillips LA, Su X, Ma J, Miller CB, Shurtleff SA, Downing JR.","wrangling_procedure":"Wrangled from CEL files using the R aroma.affymetrix package. Quantile normalization was performed, then copy number analyzed using RMA. Chip and fragment length effects were normalized out. A GLAD model was then fitted to make gain and loss calls. Finally, raw copy numbers were extracted for each probeset.","sample_type":["tumor"],"type":"genomicMatrix","wrangler":"Chris Szeto","version":"2011-11-01","primary_disease":"acute lymphoblastic leukemia"}

Child T-ALL SNP6 CGH (Mullighan et al. 2008)

{"cohort":"Breast Cancer (Caldas 2007)","dataSubType":"phenotype","label":"Phenotypes","tags":["cancer"],"name":"Caldas2007/chinSF2007_public_clinicalMatrix","clinicalfeature":"Caldas2007/chinSF2007_public_clinicalFeature","type":"clinicalMatrix","wrangler":"Chris Szeto ","version":"2011-11-11"}

{"assembly":"hg18","author":"Chris Szeto ","name":"Caldas2007/chinSFGenomeBio2007Probe","type":"probeMap","version":"2012-06-14","wrangler":"Chris Szeto "}

{"longTitle":"CGH (Chin, Caldas et al. Genome Bio 2007)","cohort":"Breast Cancer (Caldas 2007)","url":"http://www.ncbi.nlm.nih.gov/pubmed/17925008","probeMap":"Caldas2007/chinSFGenomeBio2007Probe","dataSubType":"copy number","citation":"Genome Biol. 2007;8(10):R215","label":"Caldas, Chin CGH","articletitle":"High-resolution aCGH and expres","anatomical_origin":["Breast"],"name":"Caldas2007/chinSFGenomeBio2007_genomicMatrix","dataproducer":"Chin SF, Teschendorff AE, Marioni JC, Wang Y, Barbosa-Morais NL, Thorne NP, Costa JL, Pinder SE, van de Wiel MA, Green AR, Ellis IO, Porter PL, Tavare S, Brenton JD, Ylstra B, Caldas C.","wrangling_procedure":"Array platform annotations and aCGH data were obtained from NCBI Gene Expression Omnibus (GEO) under accessions GPL5737 and GSE8757, respectively. Array data were mapped to probe annotations via probe ID.","sample_type":["tumor"],"type":"genomicMatrix","wrangler":"Chris Szeto ","version":"2011-11-01","primary_disease":"breast cancer"}