{"cohort":"GDC TCGA Prostate Cancer (PRAD)","url":"https://docs.gdc.cancer.gov/Data/Release_Notes/Data_Release_Notes/#data-release-80, https://api.gdc.cancer.gov/data/","probeMap":"probeMaps/gencode.v22.annotation.gene.probeMap","dataSubType":"gene expression RNAseq","label":"HTSeq - FPKM","name":"TCGA-PRAD/Xena_Matrices/TCGA-PRAD.htseq_fpkm.tsv","dataproducer":"Genomic Data Commons","wrangling_procedure":"Data from the same sample but from different vials/portions/analytes/aliquotes is averaged; data from different samples is combined into genomicMatrix; all data is then log2(x+1) transformed.","type":"genomicMatrix","wrangler":"Xena GDC ETL script","version":"09-15-2017","unit":"log2(fpkm+1)","platform":"Illumina","colnormalization":true}

{"cohort":"GDC TCGA Prostate Cancer (PRAD)","url":"https://docs.gdc.cancer.gov/Data/Release_Notes/Data_Release_Notes/#data-release-80, https://api.gdc.cancer.gov/data/","probeMap":"probeMaps/gencode.v22.annotation.gene.probeMap","dataSubType":"gene expression RNAseq","label":"HTSeq - FPKM-UQ","name":"TCGA-PRAD/Xena_Matrices/TCGA-PRAD.htseq_fpkm-uq.tsv","dataproducer":"Genomic Data Commons","wrangling_procedure":"Data from the same sample but from different vials/portions/analytes/aliquotes is averaged; data from different samples is combined into genomicMatrix; all data is then log2(x+1) transformed.","type":"genomicMatrix","wrangler":"Xena GDC ETL script","version":"09-15-2017","unit":"log2(fpkm-uq+1)","platform":"Illumina","colnormalization":true}

{"start_index":1,"cohort":"GDC TCGA Prostate Cancer (PRAD)","url":"https://docs.gdc.cancer.gov/Data/Release_Notes/Data_Release_Notes/#data-release-80, https://api.gdc.cancer.gov/data/","dataSubType":"copy number","label":"Masked Copy Number Segment","name":"TCGA-PRAD/Xena_Matrices/TCGA-PRAD.masked_cnv.tsv","dataproducer":"Genomic Data Commons","wrangling_procedure":"Data from different samples is combined into genomicSegment; chromosome location and segment mean data are presented.","assembly":"hg38","type":"genomicSegment","wrangler":"Xena GDC ETL script","version":"09-19-2017","unit":"log2(copy-number/2)","platform":"Affymetrix SNP 6.0"}