TCGA brain lower grade glioma and glioblastoma multiforme (GBMLGG) PARADIGM inference activity (RNAseq)

{"cgdataversion":1,"owner":"TCGA","longTitle":"TCGA brain lower grade glioma and glioblastoma multiforme (GBMLGG) PARADIGM inference activity (RNAseq + CNV)","cohort":"TCGA lower grade glioma and glioblastoma (GBMLGG)","url":"http://gdac.broadinstitute.org/runs/analyses__2016_01_28/data/GBMLGG/20160128/","probeMap":"paradigmPathwayV1.probeMap","dataSubType":"PARADIGM pathway activity","security":"public","label":"expression + CNV","tags":["cancer","nervous system"],"path":"data/public/TCGA/GBMLGG/Pathway_Paradigm_RNASeq_And_Copy_Number","anatomical_origin":["Brian"],"name":"TCGA.GBMLGG.sampleMap/Pathway_Paradigm_RNASeq_And_Copy_Number","dataproducer":"TCGA FIREHOSE pipeline","wrangling_procedure":"FIREHOSE data download from TCGA DCC, processed at UCSC into cgData repository","sample_type":["tumor"],"redistribution":true,"domain":"TCGA","groupTitle":"TCGA glioblastoma multiforme and brain lower grade glioma","type":"genomicMatrix","wrangler":"cgData TCGAscript Pathway_Paradigm processed on 2017-09-08","version":"2017-09-08","primary_disease":"glioblastoma multiforme and brain lower grade glioma","description":"Broad FireHose automated run results of TCGA brain lower grade glioma and glioblastoma multiforme (GBMLGG) gene activity level inferred using the PARADIGM method by integrating RNAseq and copy number data.<br><br>PARADIGM (PMID 20529912) is pathway analysis method to infer tumor sample-specific genetic activities by incorporating curated pathway interactions as well as integrating diverse types of genomic data. The pathways used in this analysis are from <a href=\"http://pid.nci.nih.gov/\" target=\"_blank\"><u>NCI pathway interaction database</u></a>.<br><br>"}

TCGA brain lower grade glioma and glioblastoma multiforme (GBMLGG) PARADIGM inference activity (RNAseq + CNV)

{"cgdataversion":1,"owner":"TCGA","longTitle":"TCGA brain lower grade glioma and glioblastoma multiforme (GBMLGG) PARADIGM inference activity (array mRNA)","cohort":"TCGA lower grade glioma and glioblastoma (GBMLGG)","url":"http://gdac.broadinstitute.org/runs/analyses__2016_01_28/data/GBMLGG/20160128/","probeMap":"paradigmPathwayV1.probeMap","dataSubType":"PARADIGM pathway activity","security":"public","label":"exprssion (array)","tags":["cancer","nervous system"],"path":"data/public/TCGA/GBMLGG/Pathway_Paradigm_mRNA","anatomical_origin":["Brian"],"name":"TCGA.GBMLGG.sampleMap/Pathway_Paradigm_mRNA","dataproducer":"TCGA FIREHOSE pipeline","wrangling_procedure":"FIREHOSE data download from TCGA DCC, processed at UCSC into cgData repository","sample_type":["tumor"],"redistribution":true,"domain":"TCGA","groupTitle":"TCGA glioblastoma multiforme and brain lower grade glioma","type":"genomicMatrix","wrangler":"cgData TCGAscript Pathway_Paradigm processed on 2017-09-08","version":"2017-09-08","primary_disease":"glioblastoma multiforme and brain lower grade glioma","description":"Broad FireHose automated run results of TCGA brain lower grade glioma and glioblastoma multiforme (GBMLGG) gene activity level inferred using the PARADIGM method on gene expression data from Agilent array alone.<br><br>PARADIGM (PMID 20529912) is pathway analysis method to infer tumor sample-specific genetic activities by incorporating curated pathway interactions as well as integrating diverse types of genomic data. The pathways used in this analysis are from <a href=\"http://pid.nci.nih.gov/\" target=\"_blank\"><u>NCI pathway interaction database</u></a>.<br><br>"}