{"cohort":"TCGA Pan-Cancer (PANCAN)","url":"https://www.synapse.org/#!Synapse:syn4976369.3","probeMap":"probeMap/hugo_gencode_good_hg19_V24lift37_probemap","dataSubType":"gene expression RNAseq","label":"Batch effects normalized mRNA data","name":"EB++AdjustPANCAN_IlluminaHiSeq_RNASeqV2.geneExp.xena","type":"genomicMatrix","version":"2016-12-29","unit":"log2(norm_value+1)","colnormalization":true}

{"name":"TCGA_phenotype_denseDataOnlyDownload.tsv","cohort":"TCGA Pan-Cancer (PANCAN)","type":"clinicalMatrix","clinicalfeature":"PANCAN_clinicalFeature","label":"sample type and primary disease","dataSubType":"phenotype","wrangling_procedure":"sample type and primary disease information combined from all individual TCGA cohorts","version":"2016-12-29"}

{"cohort":"TCGA Pan-Cancer (PANCAN)","url":"https://www.synapse.org/#!Synapse:syn5011220.1","dataSubType":"copy number segments","label":"After remove germline cnv","name":"broad.mit.edu_PANCAN_Genome_Wide_SNP_6_whitelisted.xena","wrangling_procedure":"download segment data from synapse, remove all normal samples.","assembly":"hg19","type":"genomicSegment","version":"2016-12-29","unit":"log(tumor/normal)"}

{"assembly":"hg19","dbxref":"xena:illuminaMethyl450_hg19_GPL16304","type":"probeMap","version":"2018-06-26","name":"probeMap/illuminaMethyl450_hg19_GPL16304_TCGAlegacy","wrangling_procedure":"start with illuminaMethyl450_hg19_GPL16304, remove all probes that are masked by the TCGA methylation group due to probe quality, there are no level 3 data for those probes in TCGA legacy data release","idtype":"probe","label":"Infinium HumanMethylation450 array TCGA legacy version (hg19)"}

{"name":"jhu-usc.edu_PANCAN_HumanMethylation450.betaValue_whitelisted.tsv.synapse_download_5096262.xena","cohort":"TCGA Pan-Cancer (PANCAN)","type":"genomicMatrix","probeMap":"probeMap/illuminaMethyl450_hg19_GPL16304_TCGAlegacy","unit":"beta value","label":"DNA methylation (Methylation450K)","dataSubType":"DNA methylation","url":"https://www.synapse.org/#!Synapse:syn4557906.9","version":"2016-12-29"}