TCGA acute myeloid leukemia (LAML) gene-level non-silent somatic mutation (pancan awg)

{"longTitle":"TCGA acute myeloid leukemia (LAML) exon expression by RNAseq (polyA+ IlluminaGA)","cohort":"TCGA Acute Myeloid Leukemia (LAML)","url":"https://tcga-data.nci.nih.gov/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/laml/cgcc/bcgsc.ca/illuminaga_rnaseq/rnaseq/","probeMap":"exon_TCGA.hg18.Feb2011.gaf.probemap","dataSubType":"exon expression RNAseq","rnatype":"polyA+","label":"IlluminaGA","tags":["cancer"],"path":"data/public/TCGA/LAML/GA_exon","anatomical_origin":["White blood cell"],"name":"TCGA.LAML.sampleMap/GA_exon","dataproducer":"British Columbia Cancer Agency TCGA genome characterization center","wrangling_procedure":"Level_3 data (file names: *.exon_quantification.txt) are downloaded from TCGA DCC, log2(x+1) transformed, and processed at UCSC into Xena repository.","sample_type":["tumor"],"redistribution":true,"groupTitle":"TCGA acute myeloid leukemia","type":"genomicMatrix","wrangler":"Xena TCGAscript RNAseq processed on 2017-10-13","version":"2017-10-13","gdata_tags":["transcription"],"unit":"log2(RPKM+1)","primary_disease":"acute myeloid leukemia","platform":"IlluminaGA_RNASeq","colnormalization":true,"description":" The exon expression profile was measured experimentally using the  Illumina Genome Analyzer RNA Sequencing platform by the British Columbia Cancer Agency TCGA genome characterization center. Level 3 data was downloaded from TCGA data coordination center. This dataset shows the exon-level transcription estimates, as in RPKM values (Reads Per Kilobase of exon model per Million mapped reads). Exons are mapped onto the human genome coordinates using UCSC Xena unc_RNAseq_exon probeMap (see ID/Gene mapping link below for details.<br><br>In order to more easily view the differential expression between samples, we set the default view to center each gene or exon to zero by independently subtracting the mean of each gene or exon on the fly. Users can view the original non-normalized values by adjusting visualization settings.<br><br>"}