{"cohort":"TCGA Pan-Cancer (PANCAN)","url":"https://www.synapse.org/#!Synapse:syn5011220.1","probeMap":"probeMap/hugo_gencode_good_hg19_V24lift37_probemap","dataSubType":"copy number (gene-level)","label":"tumor gene-level copy number (delete germline cnv, SNP6 array)","name":"broad.mit.edu_PANCAN_Genome_Wide_SNP_6_whitelisted.gene.xena","wrangling_procedure":"download data from synampse, remove all normal samples, converted segment data to gene level CNV value by segment-size-weighted gene average.","type":"genomicMatrix","version":"2016-12-29","unit":"log(tumor/normal)"}

{"name":"mc3.v0.2.8.PUBLIC.nonsilentGene.xena","cohort":"TCGA Pan-Cancer (PANCAN)","type":"genomicMatrix","probeMap":"probeMap/hugo_gencode_good_hg19_V24lift37_probemap","label":"Gene level non-silent mutation","dataSubType":"somatic mutation (SNP and INDEL)","url":"https://www.synapse.org/#!Synapse:syn5917256","version":"2016-12-29","wrangling_procedure":"downlaod mc3.v0.2.8.PUBLIC.maf.gz, only kept mutations with filter=PASS, converted to binary gene-level non-silent mutation calls"}

{"name":"TCGA.HRD_withSampleID.txt","cohort":"TCGA Pan-Cancer (PANCAN)","type":"clinicalMatrix","version":"2017-06-13","url":"https://www.synapse.org/#!Synapse:syn8605330, https://www.synapse.org/#!Synapse:syn8241725","label":"HRD score, genome-wide DNA damage footprint","dataSubType":"signatures"}

{"name":"TCGASubtype.20170308.tsv","cohort":"TCGA Pan-Cancer (PANCAN)","type":"clinicalMatrix","label":"Molecular subtype","dataSubType":"phenotype","url":"https://www.synapse.org/#!Synapse:syn8402849, https://docs.google.com/spreadsheets/d/11VdviGiovgnSzTRb-0-Qv5SUfkXdoqSlAs4D9mFp1ao/edit#gid=0","version":"2017-06-25"}

{"name":"TCGA_PanCan33_iCluster_k28_tumor","cohort":"TCGA Pan-Cancer (PANCAN)","type":"clinicalMatrix","version":"2017-08-21","url":"https://www.synapse.org/#!Synapse:syn10172423, https://www.synapse.org/#!Synapse:syn10380014","dataSubType":"iCluster","label":"iCluster cluster assignments","description":"Kmean results of the latent variable matrix","clinicalfeature":"icluster_clinFeature"}