{"start_index":1,"owner":"TCGA","longTitle":"TCGA cervical squamous cell carcinoma and endocervical adenocarcinoma (CESC) somatic mutation (wustl curated)","cohort":"TCGA Cervical Cancer (CESC)","url":"https://tcga-data.nci.nih.gov/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/cesc/gsc/genome.wustl.edu/illuminaga_dnaseq_curated/mutations/","dataSubType":"somatic mutation (SNPs and small INDELs)","security":"public","label":"wustl curated","method":"WashU pipeline","tags":["cancer"],"path":"data/public/TCGA/CESC/mutation_curated_wustl","anatomical_origin":["Cervix"],"name":"TCGA.CESC.sampleMap/mutation_curated_wustl","dataproducer":"Genome Institute at Washington University Sequencing Center","wrangling_procedure":"Download .maf file from TCGA DCC, removed any calls from WGS samples, processed into UCSC Xena mutation format, stored in the UCSC Xena repository","sample_type":["tumor"],"assembly":"hg19","redistribution":true,"domain":"TCGA","type":"mutationVector","wrangler":"TCGAscript maf processed on 2017-09-08","version":"2017-09-08","gdata_tags":["Genome Institute at Washington University Sequencing Center"],"primary_disease":"cervical & endocervical cancer","platform":"IlluminaGA","description":"TCGA cervical squamous cell carcinoma and endocervical adenocarcinoma (CESC) somatic mutation data. Sequencing data are generated on a IlluminaGA system. The calls are generated at Genome Institute at Washington University Sequencing Center using the WashU pipeline method.","wholegenome":true}

TCGA cervical squamous cell carcinoma and endocervical adenocarcinoma (CESC) somatic mutation (wustl curated)

TCGA cervical squamous cell carcinoma and endocervical adenocarcinoma (CESC) segmented copy number (delete germline cnv)

{"cgdataversion":1,"owner":"TCGA","longTitle":"TCGA cervical squamous cell carcinoma and endocervical adenocarcinoma (CESC) miRNA mature strand expression by RNAseq (IlluminaHiseq)","cohort":"TCGA Cervical Cancer (CESC)","url":"https://tcga-data.nci.nih.gov/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/cesc/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/","dataSubType":"miRNA mature strand expression RNAseq","security":"public","label":"IlluminaHiseq","tags":["cancer"],"path":"data/public/TCGA/CESC/miRNA_HiSeq_gene","anatomical_origin":["Cervix"],"name":"TCGA.CESC.sampleMap/miRNA_HiSeq_gene","dataproducer":"British Columbia Cancer Agency TCGA genome characterization center","wrangling_procedure":"Level_3 Data (file names: *.isoform.quantification.txt) download from TCGA DCC, for each sample, all isoform expression for the same miRNA mature strand are added together, log2(total_RPM +1) transformed, and deposited at UCSC into Xena repository.","sample_type":["tumor"],"redistribution":true,"domain":"TCGA","type":"genomicMatrix","wrangler":"cgData TCGAscript miRNAseq processed on 2017-09-08","version":"2017-09-08","gdata_tags":["transcription","miRNA"],"unit":"log2(RPM+1)","primary_disease":"cervical & endocervical cancer","platform":"IlluminaHiSeq_miRNASeq","colnormalization":true}