TCGA lung adenocarcinoma (LUAD) gene expression (AgilentG4502A_07_3 array)

TCGA lung adenocarcinoma (LUAD) exon expression by RNAseq (polyA+ IlluminaHiSeq)

TCGA lung cancer (LUNG) DNA methylation (HumanMethylation27)

TCGA lung cancer (LUNG) DNA methylation (HumanMethylation450)

{"owner":"TCGA","longTitle":"TCGA lung cancer (LUNG) copy number gistic2 estimate","cohort":"TCGA Lung Cancer (LUNG)","dataSubType":"copy number (gene-level)","security":"public","label":"gistic2","tags":["cancer","non-small cell lung cancer"],"path":"data/public/TCGA/LUNG/Gistic2_CopyNumber_Gistic2_all_data_by_genes","anatomical_origin":["Lung"],"name":"TCGA.LUNG.sampleMap/Gistic2_CopyNumber_Gistic2_all_data_by_genes","sample_type":["tumor"],"redistribution":true,"domain":"TCGA","type":"genomicMatrix","version":"2017-09-08","unit":"Gistic2 copy number","primary_disease":"lung cancer","description":"The dataset is combined from TCGA lung squamous cell carcinoma and lung adenocarcinoma datasets. TCGA lung cancer (LUNG) gene-level copy number variation (CNV) estimated using the GISTIC2 method.<br><br> Copy number profile was measured experimentally using whole genome microarray at a TCGA genome characterization center. Subsequently, TCGA FIREHOSE pipeline applied GISTIC2 method to produce segmented CNV data, which was then mapped to genes to produce gene-level estimates. Genes are mapped onto the human genome coordinates using UCSC xena HUGO probeMap. Reference to GISTIC2 method PMID:21527027.<br><br>"}

TCGA lung cancer (LUNG) copy number gistic2 estimate

{"owner":"TCGA","longTitle":"TCGA lung cancer (LUNG) phospho- or total protein expression by reverse phase protein array (replicate-base normalization)","cohort":"TCGA Lung Cancer (LUNG)","dataSubType":"protein expression RPPA","security":"public","label":"RPPA (replicate-base normalization)","tags":["cancer","non-small cell lung cancer"],"path":"data/public/TCGA/LUNG/RPPA_RBN","anatomical_origin":["Lung"],"name":"TCGA.LUNG.sampleMap/RPPA_RBN","sample_type":["tumor"],"redistribution":true,"domain":"TCGA","type":"genomicMatrix","version":"2017-09-08","unit":"RBN normalized RPPA value","primary_disease":"lung cancer","description":"The dataset is combined from TCGA lung squamous cell carcinoma and lung adenocarcinoma datasets. TCGA lung cancer (LUNG) protein expression data for 131 proteins, measured by RPPA (reverse phase protein array) technology. These data have been normalized by RBN (replicate-base normalization) method developed by MDACC. Details: https://www.synapse.org/#!Synapse:syn1750330 and http://bioinformatics.mdanderson.org/main/TCPA:Overview.<br><br>"}