TCGA brain lower grade glioma (LGG) somatic mutation (broad automated)

{"owner":"TCGA","longTitle":"TCGA brain lower grade glioma (LGG) DNA methylation (MethylMix)","cohort":"TCGA Lower Grade Glioma (LGG)","dataSubType":"DNAMethylation","security":"private","label":"DNA Methylation (MethylMix)","path":"data/public/TCGA/LGG/oneoff_TCGA_LGG_MethylMix","anatomical_origin":"Brain","name":"TCGA.LGG.sampleMap/oneoff_TCGA_LGG_MethylMix","dataproducer":"MethylMix, Stanford","sample_type":"tumor","redistribution":true,"domain":"TCGA","groupTitle":"TCGA brain lower grade glioma","type":"genomicMatrix","version":"2013-04-11","primary_disease":"brain lower grade glioma","platform":"MethylMix"}

TCGA brain lower grade glioma (LGG) DNA methylation (MethylMix)

TCGA brain lower grade glioma (LGG) gene expression by RNAseq (polyA+ IlluminaHiSeq percentile)

TCGA brain lower grade glioma (LGG) gene expression by RNAseq (ployA+ IlluminaHiSeq), pancan normalized

TCGA brain lower grade glioma (LGG) gene expression by RNAseq (polyA+ IlluminaHiSeq)

{"start_index":1,"owner":"TCGA","longTitle":"TCGA brain lower grade glioma (LGG) somatic mutation (bcm automated)","cohort":"TCGA Lower Grade Glioma (LGG)","url":"https://tcga-data.nci.nih.gov/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/lgg/gsc/hgsc.bcm.edu/illuminaga_dnaseq_automated/mutations/","dataSubType":"somatic mutation (SNPs and small INDELs)","security":"public","label":"bcm automated","method":"Baylor pipeline","tags":["cancer","nervous system"],"path":"data/public/TCGA/LGG/mutation_bcm","anatomical_origin":["Brain"],"name":"TCGA.LGG.sampleMap/mutation_bcm","dataproducer":"Baylor College of Medicine Human Genome Sequencing Center","wrangling_procedure":"Download .maf file from TCGA DCC, removed any calls from WGS samples, processed into UCSC Xena mutation format, stored in the UCSC Xena repository","sample_type":["tumor"],"assembly":"hg19","redistribution":true,"domain":"TCGA","type":"mutationVector","wrangler":"TCGAscript maf processed on 2017-09-08","version":"2017-09-08","gdata_tags":["Baylor College of Medicine Human Genome Sequencing Center"],"primary_disease":"brain lower grade glioma","platform":"IlluminaGA","description":"TCGA brain lower grade glioma (LGG) somatic mutation data. Sequencing data are generated on a IlluminaGA system. The calls are generated at Baylor College of Medicine Human Genome Sequencing Center using the Baylor pipeline method.","wholegenome":true}