{"name":"donor.all_projects.overallSurvival.hasRNASNV","label":"overall survival","type":"clinicalMatrix","dataSubType":"phenotype","cohort":"ICGC (US donors with both RNA and SNV data)","url":"https://dcc.icgc.org/api/v1/download?fn=/release_22/Summary/donor.all_projects.tsv.gz","clinicalfeature":"donor.all_projects.overallSurvival_clinFeature"}

{"cohort":"PACA-AU","url":"http://www.nature.com/nature/journal/v531/n7592/extref/nature16965-s2.xlsx, http://www.nature.com/nature/journal/v531/n7592/full/nature16965.html","dataSubType":"phenotype","citation":"Nature 531, 47-52 (03 March 2016) doi:10.1038/nature16965","label":"expression subtype by NMF classification","articletitle":"Genomic analyses identify molecular subtypes of pancreatic cancer","name":"PACA-AU/nature16965-s2_NMF_class_assignment.txt","dataproducer":"Peter Bailey et. al.","wrangling_procedure":"download supplemental table 14, sheet NMF_class_assignment","type":"clinicalMatrix","version":"2016-09-09"}

{"name":"PACA-AU/ensembleGene_hg19_nature16965-s2_normalised_exp","type":"probeMap","version":"2015-04-17","notes":"ensembleGene_hg19, rows that actually have data in the gneomicMatrix file nature16965-s2_normalised_exp","assembly":"hg19"}

{"cohort":"PACA-AU","url":"http://www.nature.com/nature/journal/v531/n7592/extref/nature16965-s2.xlsx, http://www.nature.com/nature/journal/v531/n7592/full/nature16965.html","probeMap":"PACA-AU/ensembleGene_hg19_nature16965-s2_normalised_exp","dataSubType":"gene expression","citation":"Nature 531, 47-52 (03 March 2016) doi:10.1038/nature16965","label":"gene expression","articletitle":"Genomic analyses identify molecular subtypes of pancreatic cancer","name":"PACA-AU/nature16965-s2_normalised_exp.txt","dataproducer":"Peter Bailey et. al.","wrangling_procedure":"download supplemental table 14, sheet PDAC normalised exp","type":"genomicMatrix","version":"2016-09-09","unit":"log2(cpm)","colnormalization":true}

{"name":"probeMap/gencode.v23.annotation.transcript.probemap","type":"probeMap","version":"2018-07-13","assembly":"hg38","xdb":"genecode Release 23 (GRCh38.p3)","url":"ftp://ftp.sanger.ac.uk/pub/gencode/Gencode_human/release_23/gencode.v23.annotation.gtf.gz","note":"comprehensive annotation, transcript only","label":"gencode v23 comprehensive transcript annotation (hg38)","idtype":"transcript"}