{"cohort":"GDC TCGA Thyroid Cancer (THCA)","min":0.00000,"url":"https://docs.gdc.cancer.gov/Data/Release_Notes/Data_Release_Notes/#data-release-90, https://api.gdc.cancer.gov/data/","probeMap":"probeMaps/illuminaMethyl450_hg38_GDC","dataSubType":"DNA methylation","label":"Illumina Human Methylation 450","max":1.00000,"name":"TCGA-THCA/Xena_Matrices/TCGA-THCA.methylation450.tsv","dataproducer":"Genomic Data Commons","wrangling_procedure":"Beta_value from the same sample but from different vials/portions/analytes/aliquotes is averaged; beta_value from different samples is combined into genomicMatrix.","type":"genomicMatrix","wrangler":"Xena GDC ETL script","version":"12-18-2017","unit":"beta value","platform":"Illumina Human Methylation 450"}

{"cohort":"GDC TCGA Thyroid Cancer (THCA)","url":"https://docs.gdc.cancer.gov/Data/Release_Notes/Data_Release_Notes/#data-release-80, https://api.gdc.cancer.gov/data/","dataSubType":"stem loop expression","label":"miRNA Expression Quantification","name":"TCGA-THCA/Xena_Matrices/TCGA-THCA.mirna.tsv","dataproducer":"Genomic Data Commons","wrangling_procedure":"RPM Data from the same sample but from different vials/portions/analytes/aliquotes is averaged; data from different samples is combined into genomicMatrix; all data is then log2(x+1) transformed.","type":"genomicMatrix","wrangler":"Xena GDC ETL script","version":"09-15-2017","unit":"log2(RPM+1)","platform":"Illumina","colnormalization":true}

{"start_index":1,"cohort":"GDC TCGA Thyroid Cancer (THCA)","url":"https://docs.gdc.cancer.gov/Data/Release_Notes/Data_Release_Notes/#data-release-100, https://api.gdc.cancer.gov/data/dcf01652-1420-4189-b087-b968692c6208","dataSubType":"somatic mutation (SNPs and small INDELs)","label":"MuSE Variant Aggregation and Masking","name":"TCGA-THCA/Xena_Matrices/TCGA-THCA.muse_snv.tsv","dataproducer":"Genomic Data Commons","wrangling_procedure":"Data from different samples is combined into mutationVector; \"Hugo_Symbol\", \"Chromosome\", \"Start_Position\", \"End_Position\", \"Reference_Allele\", \"Tumor_Seq_Allele2\", \"Tumor_Sample_Barcode\", \"HGVSp_Short\" and \"Consequence\" data are renamed accordingly and presented; \"dna_vaf\" data is added and is calculated by \"t_alt_count\"/\"t_depth\".","assembly":"hg38","type":"mutationVector","wrangler":"Xena GDC ETL script","version":"02-04-2018","platform":"Illumina"}