{"cohort":"TCGA Endometrioid Cancer (UCEC)","url":"http://rabit.dfci.harvard.edu/download/","dataSubType":"Transcription factor regulatory impact","citation":"Proc Natl Acad Sci U S A. 2015","label":"HiSeqV2, by RABIT","author":"Peng Jiang, Matthew L. Freedman, Jun S. Liu, X. Shirley Liu","articletitle":"Inference of transcriptional regulation in cancers","name":"RABIT/separate_processed/RABIT_UCEC.HiSeq.V2","dataproducer":"Peng Jiang, Matthew L. Freedman, Jun S. Liu, X. Shirley Liu","type":"clinicalMatrix","pmid":26056275,"description":"Regulatory impact of each Transcription Factor (TF) on tumor specific gene expression patterns calculated by the RABIT tool. The column names are TF names, and the row names are TCGA sample IDs. RABIT uses a linear model t-value (coefficient / stderr) to represent the TF regulatory impact to gene expression in each tumor, and show the t-value in each matrix cell. A positive t-value indicates the TF up-regulates its target genes and a negative value indicates the TF down-regulate its target genes."}

TCGA uterine corpus endometrioid carcinoma (UCEC) DNA methylation (HumanMethylation27)

TCGA uterine corpus endometrioid carcinoma (UCEC) gene expression by RNAseq (polyA+ IlluminaGA)

TCGA uterine corpus endometrioid carcinoma (UCEC) DNA methylation (HumanMethylation450)

{"longTitle":"TCGA uterine corpus endometrioid carcinoma (UCEC) copy number gistic2 estimate","cohort":"TCGA Endometrioid Cancer (UCEC)","url":"http://gdac.broadinstitute.org/runs/analyses__2016_01_28/data/UCEC/20160128/","dataSubType":"copy number (gene-level)","security":"public","label":"gistic2","tags":["cancer","uterus"],"path":"data/public/TCGA/UCEC/Gistic2_CopyNumber_Gistic2_all_data_by_genes","anatomical_origin":["Endometrium"],"name":"TCGA.UCEC.sampleMap/Gistic2_CopyNumber_Gistic2_all_data_by_genes","dataproducer":"TCGA FIREHOSE pipeline","wrangling_procedure":"FIREHOSE data download from TCGA DCC, processed at UCSC into xena repository","sample_type":["tumor"],"redistribution":true,"groupTitle":"TCGA uterine corpus endometrioid carcinoma","type":"genomicMatrix","wrangler":"xena TCGAscript CopyNumber_Gistic2 processed on 2017-09-08","version":"2017-09-08","unit":"Gistic2 copy number","primary_disease":"uterine corpus endometrioid carcinoma","description":"TCGA uterine corpus endometrioid carcinoma (UCEC) gene-level copy number variation (CNV) estimated using the GISTIC2 method.<br><br> Copy number profile was measured experimentally using whole genome microarray at a TCGA genome characterization center. Subsequently, TCGA FIREHOSE pipeline applied GISTIC2 method to produce segmented CNV data, which was then mapped to genes to produce gene-level estimates. Genes are mapped onto the human genome coordinates using UCSC xena HUGO probeMap. Reference to GISTIC2 method PMID:21527027.<br><br>"}