{"longTitle":"Gene expression (Raponi et al. 2006)","cohort":"Lung Cancer (Raponi 2006)","url":"http://www.ncbi.nlm.nih.gov/pubmed/16885343","probeMap":"probeMap/affyU133_ucscGenomeBrowser_hg18.probeMap","dataSubType":"gene expression","citation":"Cancer Res. 2006 Aug 1;66(15):7466-72.","label":"Raponi gene expression","articletitle":"Gene expression signatures for predicting prognosis of squamous cell and adenocarcinomas of the lung.","tags":["cancer"],"anatomical_origin":["Lung"],"name":"raponi2006_public/raponi2006_genomicMatrix","dataproducer":"Raponi M, Zhang Y, Yu J, Chen G, Lee G, Taylor JM, Macdonald J, Thomas D, Moskaluk C, Wang Y, Beer DG.","wrangling_procedure":"Downloaded matrix files from GEO (<A HREF=\"http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE4573\">GSE4573</A>). Probe-level normalized by median centering.","sample_type":["tumor"],"type":"genomicMatrix","wrangler":"Chris Szeto","version":"2011-11-01","gdata_tags":["transcription","mRNA"],"primary_disease":"lung cancer"}

{"cohort":"Lung Cancer (Raponi 2006)","url":"http://www.ncbi.nlm.nih.gov/pubmed/16885343","dataSubType":"phenotype","label":"Phenotypes","tags":["cancer"],"name":"raponi2006_public/raponi2006_public_clinicalMatrix","clinicalfeature":"raponi2006_public/raponi2006_public_clinicalFeature","type":"clinicalMatrix","wrangler":"Chris Szeto","version":"2011-11-11"}

{"owner":"literature","longTitle":"Lung CGH (Weir et al. 2007)","cohort":"Lung Cancer CGH (Weir 2007)","url":"http://www.ncbi.nlm.nih.gov/pubmed/17982442","probeMap":"probeMap/probeAffy500K","dataSubType":"copy number","citation":"Nature. 2007 Dec 6;450(7171):893-8. Epub 2007 Nov 4.","label":"CGH","articletitle":"Characterizing the cancer genome in lung adenocarcinoma.","tags":["cancer"],"anatomical_origin":["Lung"],"name":"weir2007_public/weir2007_genomicMatrix","dataproducer":"Weir BA, Woo MS, Getz G, Perner S, Ding L, Beroukhim R, Lin WM, Province MA, Kraja A, Johnson LA, Shah K, Sato M, Thomas RK, Barletta JA, Borecki IB, Broderick S, Chang AC, Chiang DY, Chirieac LR, Cho J, Fujii Y, Gazdar AF, Giordano T, Greulich H, Hanna M, Johnson BE, Kris MG, Lash A, Lin L, Lindeman N, Mardis ER, McPherson JD, Minna JD, Morgan MB, Nadel M, Orringer MB, Osborne JR, Ozenberger B, Ramos AH, Robinson J, Roth JA, Rusch V, Sasaki H, Shepherd F, Sougnez C, Spitz MR, Tsao MS, Twomey D, Verhaak RG, Weinstock GM, Wheeler DA, Winckler W, Yoshizawa A, Yu S, Zakowski MF, Zhang Q, Beer DG, Wistuba II, Watson MA, Garraway LA, Ladanyi M, Travis WD, Pao W, Rubin MA, Gabriel SB, Gibbs RA, Varmus HE, Wilson RK, Lander ES, Meyerson M.","wrangling_procedure":"Data was obtained from the TSP site (<A HREF=\"http://caintegrator-info.nci.nih.gov/csp\">link to data portal</A>), as well as clinical information. Data was log2 transformed, and lifted from hg17 to hg18 coordinates using liftOver. ","sample_type":["tumor"],"redistribution":true,"type":"genomicMatrix","wrangler":"Chris Szeto","version":"2011-11-01","primary_disease":"lung cancer"}