{"cohort":"NCI-60","loader":{"duplicate-probes":[],"duplicate-keys":{"sampleID":[]},"duplicate-keys":{"sampleID":["","","0.14","","-0.229","0.056"]}},"url":"https://discover.nci.nih.gov/cellminer/, https://www.ncbi.nlm.nih.gov/pubmed/?term=24670534","probeMap":"NCI60/probeDNA_Combined_aCGH_log2","dataSubType":"Copy number","citation":"PLoS One. 2014 Mar 26;9(3):e92047","label":"DNA: Combined aCGH","articletitle":"High resolution copy number variation data in the NCI-60 cancer cell lines from whole genome microarrays accessible through CellMiner.","name":"NCI60/DNA_Combined_aCGH_log2","dataproducer":"Varma S, Pommier Y, Sunshine M, Weinstein JN, Reinhold WC","type":"genomicMatrix","version":"2018-09-06","unit":"log2(tumor/normal)","pmid":24670534,"description":"Probe intensities combined from four platforms: Agilent Human Genome CGH Microarray 44A, Nimblegen HG19 CGH 385K WG Tiling v2.0, Affymetrix GeneChip Human Mapping 500k Array Set and Illumina Human1Mv1_C Beadchip"}

{"name":"NCI60/DTP_NCI60_ZSCORE.txt","version":"2018-09-06","type":"genomicMatrix","dataSubType":"Compound activity","label":"compound activity for FDA approved or clinical trial drugs","unit":"z score","cohort":"NCI-60","url":"https://discover.nci.nih.gov/cellminer/, https://discover.nci.nih.gov/cellminer/datasetMetadata.do","description":"<b>Platform</b>: Sulforhodamine assay<br><br> Negative log10 (GI50) values of sulforhodamine B assay. Higher values equate to higher sensitivity of cell lines. We only selected the 158 Food and Drug Administration approved and 79 clinical trial drugs to be included in this dataset. Compound activity from ~ 50K compounds, including more than 20,000 that passed quality control data is available at https://discover.nci.nih.gov/cellminer/.  "}

{"name":"probeMap/affyU133_hg19","idtype":"probe","userlevel":"basic","type":"probeMap","version":"2018-08-09","url":"http://www.affymetrix.com/support/technical/byproduct.affx?product=hg-u133-plus","notes":"download HG-U133_Plus_2 Annotations, CSV format, Release 36 (36 MB, 7/12/16), HG-U133_Plus_2.na36.annot.csv, converted to probemap format, removed any probes without a genomic location","assembly":"hg19","label":"Affy U133 array (hg19) e.g. 1007_s_at"}