TCGA acute myeloid leukemia (LAML) DNA methylation (HumanMethylation27)

{"idtype":"probe","userlevel":"basic","label":"Infinium HumanMethylation450 array TCGA legacy version (hg19) e.g. cg13332474","dbxref":"xena:illuminaMethyl450_hg19_GPL16304","name":"probeMap/illuminaMethyl450_hg19_GPL16304_TCGAlegacy","wrangling_procedure":"start with illuminaMethyl450_hg19_GPL16304, remove all probes that are masked by the TCGA methylation group due to probe quality, there are no level 3 data for those probes in TCGA legacy data release","assembly":"hg19","type":"probeMap","version":"2018-06-26"}

TCGA acute myeloid leukemia (LAML) DNA methylation (HumanMethylation450)

{"longTitle":"TCGA acute myeloid leukemia (LAML) copy number gistic2 estimate","cohort":"TCGA Acute Myeloid Leukemia (LAML)","url":"http://gdac.broadinstitute.org/runs/analyses__2016_01_28/data/LAML/20160128/","dataSubType":"copy number (gene-level)","security":"public","label":"gistic2","tags":["cancer"],"path":"data/public/TCGA/LAML/Gistic2_CopyNumber_Gistic2_all_data_by_genes","anatomical_origin":["White blood cell"],"name":"TCGA.LAML.sampleMap/Gistic2_CopyNumber_Gistic2_all_data_by_genes","dataproducer":"TCGA FIREHOSE pipeline","wrangling_procedure":"FIREHOSE data download from TCGA DCC, processed at UCSC into xena repository","sample_type":["tumor"],"redistribution":true,"groupTitle":"TCGA acute myeloid leukemia","type":"genomicMatrix","wrangler":"xena TCGAscript CopyNumber_Gistic2 processed on 2017-09-08","version":"2017-09-08","unit":"Gistic2 copy number","primary_disease":"acute myeloid leukemia","description":"TCGA acute myeloid leukemia (LAML) gene-level copy number variation (CNV) estimated using the GISTIC2 method.<br><br> Copy number profile was measured experimentally using whole genome microarray at a TCGA genome characterization center. Subsequently, TCGA FIREHOSE pipeline applied GISTIC2 method to produce segmented CNV data, which was then mapped to genes to produce gene-level estimates. Genes are mapped onto the human genome coordinates using UCSC xena HUGO probeMap. Reference to GISTIC2 method PMID:21527027.<br><br>"}