TCGA pheochromocytoma and paraganglioma (PCPG) gene-level nonsilent somatic mutation (ucsc automated)

{"longTitle":"TCGA prostate adenocarcinoma (PRAD) gene-level nonsilent somatic mutation (bcm automated)","cohort":"TCGA Prostate Cancer (PRAD)","url":"https://tcga-data.nci.nih.gov/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/prad/gsc/hgsc.bcm.edu/illuminaga_dnaseq_automated/mutations/","probeMap":"probeMap/hugo_gencode_good_hg19_V24lift37_probemap","dataSubType":"somatic non-silent mutation (gene-level)","security":"public","label":"bcm automated","method":"Baylor pipeline","tags":["cancer"],"path":"data/public/TCGA/PRAD/mutation_bcm_gene","anatomical_origin":["Prostate"],"name":"TCGA.PRAD.sampleMap/mutation_bcm_gene","dataproducer":"Baylor College of Medicine Human Genome Sequencing Center","wrangling_procedure":"Download .maf file from TCGA DCC, processed into gene by sample matrix at UCSC, stored in the UCSC Xena repository","sample_type":["tumor"],"redistribution":true,"type":"genomicMatrix","wrangler":"xena TCGAscript maf processed on 2018-01-12","version":"2018-01-12","gdata_tags":["Baylor College of Medicine Human Genome Sequencing Center"],"unit":"binary non-silent mutation","primary_disease":"prostate adenocarcinoma","platform":"IlluminaGA","description":"TCGA prostate adenocarcinoma (PRAD) somatic mutation data.  Sequencing data are generated on a IlluminaGA system. The calls are generated at Baylor College of Medicine Human Genome Sequencing Center using the Baylor pipeline method. <br><br> Red (=1) indicates that a non-silent somatic mutation (nonsense, missense, frame-shif indels, splice site mutations, stop codon readthroughs, change of start codon, inframe indels) was identified in the protein coding region of a gene, or any mutation identified in a non-coding gene. White (=0) indicates that none of the above mutation calls were made in this gene for the specific sample.<br><br>"}

TCGA prostate adenocarcinoma (PRAD) gene-level nonsilent somatic mutation (bcm automated)