TCGA rectum adenocarcinoma (READ) miRNA mature strand expression by RNAseq (IlluminaGA)

TCGA rectum adenocarcinoma (READ) gene expression by RNAseq (ployA+ IlluminaHiSeq), pancan normalized

TCGA rectum adenocarcinoma (READ) gene expression by RNAseq (polyA+ IlluminaHiSeq)

{"start_index":1,"owner":"TCGA","longTitle":"TCGA rectum adenocarcinoma (READ) somatic mutation (bcm)","cohort":"TCGA Rectal Cancer (READ)","url":"https://tcga-data.nci.nih.gov/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/read/gsc/hgsc.bcm.edu/illuminaga_dnaseq/mutations/","dataSubType":"somatic mutation (SNPs and small INDELs)","security":"public","label":"bcm","method":"Baylor pipeline","tags":["cancer"],"path":"data/public/TCGA/READ/mutation_bcm","anatomical_origin":["Rectum"],"name":"TCGA.READ.sampleMap/mutation_bcm","dataproducer":"Baylor College of Medicine Human Genome Sequencing Center","wrangling_procedure":"Download .maf file from TCGA DCC, removed any calls from WGS samples, processed into UCSC Xena mutation format, stored in the UCSC Xena repository","sample_type":["tumor"],"assembly":"hg19","redistribution":true,"domain":"TCGA","type":"mutationVector","wrangler":"TCGAscript maf processed on 2017-09-08","version":"2017-09-08","gdata_tags":["Baylor College of Medicine Human Genome Sequencing Center"],"primary_disease":"rectum adenocarcinoma","platform":"IlluminaGA","description":"TCGA rectum adenocarcinoma (READ) somatic mutation data. Sequencing data are generated on a IlluminaGA system. The calls are generated at Baylor College of Medicine Human Genome Sequencing Center using the Baylor pipeline method.","wholegenome":true}

TCGA rectum adenocarcinoma (READ) somatic mutation (bcm)

{"longTitle":"TCGA rectum adenocarcinoma (READ) gene-level nonsilent somatic mutation (bcm SOLiD)","cohort":"TCGA Rectal Cancer (READ)","url":"https://tcga-data.nci.nih.gov/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/read/gsc/hgsc.bcm.edu/solid_dnaseq/mutations/","probeMap":"probeMap/hugo_gencode_good_hg19_V24lift37_probemap","dataSubType":"somatic non-silent mutation (gene-level)","security":"public","label":"bcm SOLiD","method":"Baylor pipeline","tags":["cancer"],"path":"data/public/TCGA/READ/mutation_bcm_solid_gene","anatomical_origin":["Rectum"],"name":"TCGA.READ.sampleMap/mutation_bcm_solid_gene","dataproducer":"Baylor College of Medicine Human Genome Sequencing Center","wrangling_procedure":"Download .maf file from TCGA DCC, processed into gene by sample matrix at UCSC, stored in the UCSC Xena repository","sample_type":["tumor"],"redistribution":true,"type":"genomicMatrix","wrangler":"xena TCGAscript maf processed on 2018-01-12","version":"2018-01-12","gdata_tags":["Baylor College of Medicine Human Genome Sequencing Center"],"unit":"binary non-silent mutation","primary_disease":"rectum adenocarcinoma","platform":"SOLiD","description":"TCGA rectum adenocarcinoma (READ) somatic mutation data.  Sequencing data are generated on a SOLiD system. The calls are generated at Baylor College of Medicine Human Genome Sequencing Center using the Baylor pipeline method. <br><br> Red (=1) indicates that a non-silent somatic mutation (nonsense, missense, frame-shif indels, splice site mutations, stop codon readthroughs, change of start codon, inframe indels) was identified in the protein coding region of a gene, or any mutation identified in a non-coding gene. White (=0) indicates that none of the above mutation calls were made in this gene for the specific sample.<br><br>"}