{"name":"TARGET_donor_allprojects_transfer_to_sample","type":"clinicalMatrix","version":"2016-05-18","cohort":"TARGET Pan-Cancer (PANCAN)","dataSubType":"phenotype","label":"TARGET donor phenotype","url":"ftp://caftpd.nci.nih.gov/pub/dcc_target/","clinicalfeature":"TARGET_phenotype_clinFeature"}

{"cohort":"TARGET Pan-Cancer (PANCAN)","probeMap":"probeMap/gencode.v23.annotation.transcript.probemap","dataSubType":"transcript expression RNAseq","label":"RSEM expected_count","name":"target_expected_count","dataproducer":"UCSC TOIL RNA-seq recompute","wrangling_procedure":"Data (file names: *.rsem_isoforms.results) are downloaded, expected_count values are extracted, log2(x+1) transformed, and combined.","type":"genomicMatrix","wrangler":"Xena scripts processed on 2016-05-19","version":"2016-05-19","unit":"log2(expected_count+1)","colnormalization":true}

{"cohort":"TARGET Pan-Cancer (PANCAN)","probeMap":"probeMap/gencode.v23.annotation.gene.probemap","dataSubType":"gene expression RNAseq","label":"RSEM expected_count","name":"target_gene_expected_count","dataproducer":"UCSC TOIL RNA-seq recompute","wrangling_procedure":"Data (file names: *.rsem_genes.results) are downloaded, expected_count values are extracted, log2(x+1) transformed, and combined.","type":"genomicMatrix","wrangler":"Xena scripts processed on 2016-05-19","version":"2016-05-19","unit":"log2(expected_count+1)","colnormalization":true}

{"cohort":"TARGET Pan-Cancer (PANCAN)","probeMap":"probeMap/gencode.v23.annotation.transcript.probemap","dataSubType":"transcript expression RNAseq","label":"Kallisto est_counts","name":"target_Kallisto_est_counts","dataproducer":"UCSC TOIL RNA-seq recompute","wrangling_procedure":"Data (file names: *.abundance.tsv) downaloaded, est_count values are log2(x+1) transformed, and then combined","redistribution":true,"type":"genomicMatrix","wrangler":"Xena scripts processed on 2016-02-29","version":"2016-02-29","unit":"log2(est_counts+1)","colnormalization":true}

{"cohort":"TARGET Pan-Cancer (PANCAN)","probeMap":"probeMap/gencode.v23.annotation.transcript.probemap","dataSubType":"transcript expression RNAseq","label":"Kallisto tpm","name":"target_Kallisto_tpm","dataproducer":"UCSC TOIL RNA-seq recompute","wrangling_procedure":"Data (file names: *.abundance.tsv) are downloaded, tpm values are extracted, log2(x+0.001) transformed, and combined.","type":"genomicMatrix","wrangler":"Xena scripts processed on 2016-02-29","version":"2016-02-29","unit":"log2(tpm+0.001)"}