{"name":"ccle/CCLE_RPPA_20180123","url":"https://data.broadinstitute.org/ccle/CCLE_RPPA_20180123.csv, https://portals.broadinstitute.org/ccle/data","version":"2018-05-30","cohort":"Cancer Cell Line Encyclopedia (CCLE)","type":"genomicMatrix","dataSubType":"protein expression","label":"Reverse Phase Protein Array (RPPA)"}

{"name":"ccle/CCLE_sample_info_file_2012-10-18.txt","url":"https://data.broadinstitute.org/ccle_legacy_data/cell_line_annotations/CCLE_sample_info_file_2012-10-18.txt, https://portals.broadinstitute.org/ccle/data","version":"2018-05-30","type":"clinicalMatrix","dataSubType":"phenotype","label":"cell line annotations","cohort":"Cancer Cell Line Encyclopedia (CCLE)"}

{"name":"ccle/sample_info_primary_site","version":"2018-06-12","type":"clinicalMatrix","dataSubType":"phenotype","label":"cell line primary site","wrangling_procedure":"use cell line name to derive the primary site. e.g. COLO677_LUNG primary site is LUNG","cohort":"Cancer Cell Line Encyclopedia (CCLE)"}

{"cohort":"Connectivity Map","dataSubType":"phenotype","label":"Phenotypes","tags":["cancer"],"name":"cmap/cmap_clinicalMatrix","wrangling_procedure":"download from http://www.broadinstitute.org/cmap/, processed","clinicalfeature":"cmap/cmap_clinicalFeature","type":"clinicalMatrix","version":"2013-11-02"}

{"longTitle":"Connectivity Map (CMAP O2) gene expression","cohort":"Connectivity Map","url":"http://www.broadinstitute.org/cmap/publications.jsp","probeMap":"probeMap/affyU133_ucscGenomeBrowser_hg18.probeMap","dataSubType":"gene expression","citation":"Science 313 1929-1935 (2006)","label":"Connectivity Map gene expression","articletitle":"The Connectivity Map: Using Gene-Expression Signatures to Connect Small Molecules, Genes, and Disease.","tags":["cancer","drug perturbation","cell lines"],"anatomical_origin":["breast","prostate","skin","blood"],"name":"cmap/rankMatrix_reverse","dataproducer":"The Connectivity Map project","wrangling_procedure":"download data from http://www.broadinstitute.org/cmap/, randmatrix is transformed as 22283-rank, then scaled to between 0 (down-regulated) and 1 (up-regulated), process into UCSC cgData repository.","sample_type":["cell line"],"type":"genomicMatrix","version":"2013-11-02","gdata_tags":["transcription","mRNA"],"primary_disease":"","colnormalization":true,"pmid":17008526,"description":"Connectivity Map project data, gene-expression profiles of cultured human cells (MCF7, PC3, SKMEL5, HL60) treated with larget collection of bioactive small molecules, measured on affy U133 array platform. Data shown are reversed rank scaled between 0 to 1, 1 represents the most up-regulated gene expression, and 0 represents the most down-regulated gene expression withiin each sample."}