TCGA kidney renal papillary cell carcinoma (KIRP) PARADIGM inference activity (array mRNA)

{"longTitle":"TCGA kidney renal papillary cell carcinoma (KIRP) gene-level nonsilent somatic mutation (ucsc automated)","cohort":"TCGA Kidney Papillary Cell Carcinoma (KIRP)","url":"https://tcga-data.nci.nih.gov/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/kirp/gsc/ucsc.edu/illuminaga_dnaseq_automated/mutations/","probeMap":"probeMap/hugo_gencode_good_hg19_V24lift37_probemap","dataSubType":"somatic non-silent mutation (gene-level)","security":"public","label":"ucsc automated","method":"RADIA","tags":["cancer"],"path":"data/public/TCGA/KIRP/mutation_ucsc_maf_gene","anatomical_origin":["Kidney"],"name":"TCGA.KIRP.sampleMap/mutation_ucsc_maf_gene","dataproducer":"University of Californis Santa Cruz GDAC","wrangling_procedure":"Download .maf file from TCGA DCC, processed into gene by sample matrix at UCSC, stored in the UCSC Xena repository","sample_type":["tumor"],"redistribution":true,"type":"genomicMatrix","wrangler":"xena TCGAscript maf processed on 2018-01-12","version":"2018-01-12","gdata_tags":["University of Californis Santa Cruz GDAC"],"unit":"binary non-silent mutation","primary_disease":"kidney papillary cell carcinoma","platform":"IlluminaGA","description":"TCGA kidney renal papillary cell carcinoma (KIRP) somatic mutation data.  Sequencing data are generated on a IlluminaGA system. The calls are generated at University of Californis Santa Cruz GDAC using the RADIA method. <br><br> Red (=1) indicates that a non-silent somatic mutation (nonsense, missense, frame-shif indels, splice site mutations, stop codon readthroughs, change of start codon, inframe indels) was identified in the protein coding region of a gene, or any mutation identified in a non-coding gene. White (=0) indicates that none of the above mutation calls were made in this gene for the specific sample.<br><br>"}

TCGA kidney renal papillary cell carcinoma (KIRP) gene-level nonsilent somatic mutation (ucsc automated)