TCGA glioblastoma multiforme (GBM) somatic mutation (broad)

{"cgdataversion":1,"owner":"TCGA","longTitle":"TCGA glioblastoma multiforme (GBM) phospho- or total protein expression by reverse phase protein array (replicate-base normalization)","cohort":"TCGA Glioblastoma (GBM)","url":"https://www.synapse.org/#!Synapse:syn1759392","dataSubType":"protein expression RPPA","security":"public","label":"RPPA (replicate-base normalization)","tags":["cancer","nervous system"],"path":"data/public/TCGA/GBM/RPPA_RBN","anatomical_origin":["Brain"],"name":"TCGA.GBM.sampleMap/RPPA_RBN","dataproducer":"MDACC","wrangling_procedure":"Data download from https://www.synapse.org/#!Synapse:syn1759392, processed into antibody by sample matrix at UCSC into Xena repository","sample_type":["tumor"],"redistribution":true,"domain":"TCGA","groupTitle":"TCGA glioblastoma multiforme","type":"genomicMatrix","wrangler":"cgData TCGAscript RPPA_RBN processed on 2017-09-08","version":"2017-09-08","unit":"RBN normalized RPPA value","primary_disease":"glioblastoma multiforme","description":"TCGA glioblastoma multiforme (GBM) protein expression data for 131 proteins, measured by RPPA (reverse phase protein array) technology. These data have been normalized by RBN (replicate-base normalization) method developed by MDACC. Details: https://www.synapse.org/#!Synapse:syn1750330 and http://bioinformatics.mdanderson.org/main/TCPA:Overview.<br><br>"}

TCGA glioblastoma multiforme (GBM) phospho- or total protein expression by reverse phase protein array (replicate-base normalization)

{"longTitle":"TCGA glioblastoma multiforme (GBM) gene expression (AffyU133a array)","cohort":"TCGA Glioblastoma (GBM)","url":"https://tcga-data.nci.nih.gov/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/gbm/cgcc/broad.mit.edu/ht_hg-u133a/transcriptome/","dataSubType":"gene expression array","security":"public","label":"AffyU133a","tags":["cancer","nervous system"],"path":"data/public/TCGA/GBM/HT_HG-U133A","anatomical_origin":["Brain"],"name":"TCGA.GBM.sampleMap/HT_HG-U133A","dataproducer":"Broad Institute of MIT and Harvard University cancer genomic characterization center","wrangling_procedure":"Level_3 Data download from TCGA DCC, no data transformation is carried out.","sample_type":["tumor"],"redistribution":true,"domain":"TCGA","type":"genomicMatrix","wrangler":"xena TCGAscript Affy processed on 2017-09-08","version":"2017-09-08","gdata_tags":["transcription"],"unit":"log2(affy RMA)","primary_disease":"glioblastoma multiforme","platform":"AffyU133a","colnormalization":true,"description":"TCGA glioblastoma multiforme (GBM) gene expression data by AffyU133a array.<br><br> The gene expression profile was measured experimentally using the Affymetrix HT Human Genome U133a microarray platform by the Broad Institute of MIT and Harvard University cancer genomic characterization center. Level 3 interpreted level data was downloaded from TCGA data coordination center. This dataset shows the gene-level transcription estimates. Data is in log space. Genes are mapped onto the human genome coordinates using UCSC xena HUGO probeMap.<br><br>In order to more easily view the differential expression between samples, we set the default view to center each gene or exon to zero by independently subtracting the mean of each gene or exon on the fly. Users can view the original non-normalized values by adjusting visualization settings.<br><br>"}