{"longTitle":"Gene Expression (Etemadmoghadam et al. 2009)","cohort":"Ovarian Cancer (Etemadmoghadam 2009)","url":"http://www.ncbi.nlm.nih.gov/pubmed/19193619","probeMap":"probeMap/affyU133_ucscGenomeBrowser_hg18.probeMap","dataSubType":"gene expression","citation":"Clin Cancer Res 2009 Feb 15;15(4):1417-27","label":"Etemadmoghadam Gene Exp","articletitle":"Integrated genome-wide DNA copy number and expression analysis identifies distinct mechanisms of primary chemoresistance in ovarian carcinomas.","tags":["cancer"],"anatomical_origin":["Ovarian"],"name":"etemadmoghadam2009_public/etemadmoghadam2009_exp_genomicMatrix","dataproducer":"Etemadmoghadam D, deFazio A, Beroukhim R, Mermel C, George J, Getz G, Tothill R, Okamoto A, Raeder MB, Harnett P, Lade S, Akslen LA, Tinker AV, Locandro B, Alsop K, Chiew YE, Traficante N, Fereday S, Johnson D, Fox S, Sellers W, Urashima M, Salvesen HB, Meyerson M, Bowtell D","wrangling_procedure":"SOFT file was obtained from GEO (<A HREF=\"http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE9891\">link to GEO entry</A>). All values were then probe-mean-centered. Coordinates for probes were obtained from the Affymetrix website to convert this into a bed15 format. Clinical data was obtained from GEO and merged with that of entry GSE13813. ","sample_type":["tumor"],"type":"genomicMatrix","wrangler":"Chris Szeto","version":"2011-11-01","gdata_tags":["transcription","mRNA"],"primary_disease":"ovarian cancer"}

Gene Expression (Etemadmoghadam et al. 2009)

{"cohort":"Ovarian Cancer (Etemadmoghadam 2009)","dataSubType":"phenotype","label":"Phenotypes","tags":["cancer"],"name":"etemadmoghadam2009_public/etemadmoghadam2009_public_clinicalMatrix","clinicalfeature":"etemadmoghadam2009_public/etemadmoghadam2009_public_clinicalFeature","type":"clinicalMatrix","wrangler":"Chris Szeto","version":"2011-11-11"}

{"assembly":"hg18","author":"Chris Szeto","name":"balagurunathan2008_public/Human1A_G4110AunionG4110BProbes","notes":"this is a geneExp platform, probeMap file has only \"+\" strand; did not double check hg18","type":"probeMap","version":"2012-06-14","wrangler":"Chris Szeto"}