TCGA ovarian serous cystadenocarcinoma (OV) somatic mutation (bcm SOLiD curated)

TCGA ovarian serous cystadenocarcinoma (OV) segmented copy number

{"name":"TCGA.OV.sampleMap/TCGA_OV_gene_expression_subtype","dataSubType":"phenotype","cohort":"TCGA Ovarian Cancer (OV)","label":"gene expression subtype","type":"clinicalMatrix","description":"TCGA OV gene expression subtypes predicted by Xena team using TCGA research network publication Verhaak et. al. (http://www.ncbi.nlm.nih.gov/pubmed/23257362)","version":"2016-05-27"}

TCGA ovarian serous cystadenocarcinoma (OV) exon expression by RNAseq (polyA+ IlluminaHiSeq UNC)

{"cgdataversion":1,"owner":"TCGA","longTitle":"TCGA ovarian serous cystadenocarcinoma (OV) PARADIGM inference activity (RNAseq)","cohort":"TCGA Ovarian Cancer (OV)","url":"http://gdac.broadinstitute.org/runs/analyses__2016_01_28/data/OV/20160128/","probeMap":"paradigmPathwayV1.probeMap","dataSubType":"PARADIGM pathway activity","security":"public","label":"expression","tags":["cancer"],"path":"data/public/TCGA/OV/Pathway_Paradigm_RNASeq","anatomical_origin":["Ovary"],"name":"TCGA.OV.sampleMap/Pathway_Paradigm_RNASeq","dataproducer":"TCGA FIREHOSE pipeline","wrangling_procedure":"FIREHOSE data download from TCGA DCC, processed at UCSC into cgData repository","sample_type":["tumor"],"redistribution":true,"domain":"TCGA","groupTitle":"TCGA ovarian serous cystadenocarcinoma","type":"genomicMatrix","wrangler":"cgData TCGAscript Pathway_Paradigm processed on 2017-09-08","version":"2017-09-08","primary_disease":"ovarian serous cystadenocarcinoma","description":"Broad FireHose automated run results of TCGA ovarian serous cystadenocarcinoma (OV) gene activity level inferred using the PARADIGM method on RNAseq data alone.<br><br>PARADIGM (PMID 20529912) is pathway analysis method to infer tumor sample-specific genetic activities by incorporating curated pathway interactions as well as integrating diverse types of genomic data. The pathways used in this analysis are from <a href=\"http://pid.nci.nih.gov/\" target=\"_blank\"><u>NCI pathway interaction database</u></a>.<br><br>"}