TCGA cervical squamous cell carcinoma and endocervical adenocarcinoma (CESC) gene-level nonsilent somatic mutation (ucsc automated)

TCGA colon & rectum adenocarcinoma (COADREAD) DNA methylation (HumanMethylation27)

TCGA colon & rectum adenocarcinoma (COADREAD) DNA methylation (HumanMethylation450)

{"owner":"TCGA","longTitle":"TCGA colon & rectum adenocarcinoma (COADREAD) copy number gistic2 estimate","cohort":"TCGA Colon and Rectal Cancer (COADREAD)","dataSubType":"copy number (gene-level)","security":"public","label":"gistic2","tags":["cancer"],"path":"data/public/TCGA/COADREAD/Gistic2_CopyNumber_Gistic2_all_data_by_genes","anatomical_origin":["Colon and Rectum"],"name":"TCGA.COADREAD.sampleMap/Gistic2_CopyNumber_Gistic2_all_data_by_genes","sample_type":["tumor"],"redistribution":true,"domain":"TCGA","type":"genomicMatrix","version":"2017-09-08","unit":"Gistic2 copy number","primary_disease":"colon & rectum adenocarcinoma","description":"The dataset is combined from TCGA colon adenocarcinoma and rectum adenocarcinoma datasets. TCGA colon & rectum adenocarcinoma (COADREAD) gene-level copy number variation (CNV) estimated using the GISTIC2 method.<br><br> Copy number profile was measured experimentally using whole genome microarray at a TCGA genome characterization center. Subsequently, TCGA FIREHOSE pipeline applied GISTIC2 method to produce segmented CNV data, which was then mapped to genes to produce gene-level estimates. Genes are mapped onto the human genome coordinates using UCSC xena HUGO probeMap. Reference to GISTIC2 method PMID:21527027.<br><br>"}

TCGA colon & rectum adenocarcinoma (COADREAD) copy number gistic2 estimate

{"owner":"TCGA","longTitle":"TCGA colon & rectum adenocarcinoma (COADREAD) phospho- or total protein expression by reverse phase protein array (replicate-base normalization)","cohort":"TCGA Colon and Rectal Cancer (COADREAD)","dataSubType":"protein expression RPPA","security":"public","label":"RPPA (replicate-base normalization)","tags":["cancer"],"path":"data/public/TCGA/COADREAD/RPPA_RBN","anatomical_origin":["Colon and Rectum"],"name":"TCGA.COADREAD.sampleMap/RPPA_RBN","sample_type":["tumor"],"redistribution":true,"domain":"TCGA","type":"genomicMatrix","version":"2017-09-08","unit":"RBN normalized RPPA value","primary_disease":"colon & rectum adenocarcinoma","description":"The dataset is combined from TCGA colon adenocarcinoma and rectum adenocarcinoma datasets. TCGA colon & rectum adenocarcinoma (COADREAD) protein expression data for 131 proteins, measured by RPPA (reverse phase protein array) technology. These data have been normalized by RBN (replicate-base normalization) method developed by MDACC. Details: https://www.synapse.org/#!Synapse:syn1750330 and http://bioinformatics.mdanderson.org/main/TCPA:Overview.<br><br>"}