TCGA brain lower grade glioma (LGG) somatic mutation (ucsc automated)

{"owner":"TCGA","longTitle":"TCGA brain lower grade glioma (LGG) gene-level non-silent somatic mutation (pancan awg)","cohort":"TCGA Lower Grade Glioma (LGG)","url":"https://www.synapse.org/#!Synapse:syn1729383","dataSubType":"somatic non-silent mutation (gene-level)","security":"public","label":"PANCAN AWG","tags":["cancer","nervous system"],"path":"data/public/TCGA/LGG/mutation","anatomical_origin":["Brain"],"name":"TCGA.LGG.sampleMap/mutation","dataproducer":"TCGA PANCAN AWG","wrangling_procedure":"TCGA PANCAN strictly filtered maf files (file names: *_cleaned_filtered.maf) download from Synapse, processed into gene by sample matrix at UCSC into Xena repository","sample_type":["tumor"],"redistribution":true,"domain":"TCGA","groupTitle":"TCGA brain lower grade glioma","type":"genomicMatrix","wrangler":"Xena TCGAscript mutationMatrix processed on 2017-09-08","version":"2017-09-08","unit":"binary non-silent mutation","primary_disease":"brain lower grade glioma","description":"TCGA brain lower grade glioma (LGG) somatic mutation data. Red (=1) indicates that a non-silent somatic mutation (nonsense, missense, frame-shif indels, splice site mutations, stop codon readthroughs) was identified in the protein coding region of a gene, or any mutation identified in a non-coding gene. White (=0) indicates that none of the above mutation calls were made in this gene for the specific sample.<br><br>Somatic mutations calls (even on the same tumor DNA extract) are affected by many factors including library prep, sequencing process, read mapping method, reference genome used, genome annotation, calling algorithms, and ad-hoc pre/postprocessing such as black list genes, target selection regions, and black list samples. This dataset is the best effort made by the TCGA PANCANCER Analysis Working Group. Raw PANCAN mutation data can be downloaded at the url site shown below.<br><br>"}

TCGA brain lower grade glioma (LGG) gene-level non-silent somatic mutation (pancan awg)