TCGA ovarian serous cystadenocarcinoma (OV) copy number gistic2 thresholded estimate

TCGA ovarian serous cystadenocarcinoma (OV) exon expression by RNAseq (polyA+ IlluminaHiSeq BC)

{"owner":"TCGA","longTitle":"TCGA ovarian serous cystadenocarcinoma (OV) reverse phase protein array","cohort":"TCGA Ovarian Cancer (OV)","url":"https://tcga-data.nci.nih.gov/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/ov/cgcc/mdanderson.org/mda_rppa_core/protein_exp/","dataSubType":"protein expression RPPA","security":"public","label":"RPPA","tags":["cancer"],"path":"data/public/TCGA/OV/RPPA","anatomical_origin":["Ovary"],"name":"TCGA.OV.sampleMap/RPPA","dataproducer":"MD Anderson Cancer Center TCGA proteome characterization center","wrangling_procedure":"Level_3 Data (file names: *.protein_expression.*) download from TCGA DCC, and processed at UCSC into Xena repository","sample_type":["tumor"],"redistribution":true,"domain":"TCGA","type":"genomicMatrix","wrangler":"Xena TCGAscript RPPA processed on 2017-09-08","version":"2017-09-08","unit":"normalized RPPA value","primary_disease":"ovarian serous cystadenocarcinoma","platform":"M.D. Anderson Reverse Phase Protein Array Core platform","colnormalization":true,"description":"TCGA ovarian serous cystadenocarcinoma (OV) protein expression by reverse phase protein array (RPPA).<br><br> The data was generated and processed at the MD Anderson Cancer Center TCGA proteome characterization center RPPA core. Level 3 interpreted level data was downloaded from TCGA data coordination center.<br><br>Data normalization from the MDACC RPPA core: <a href=\"http://bioinformatics.mdanderson.org/main/TCPA:Overview\" target=\"_blank\"><u>under section How are the RPPA data processed</u></a>.<br>"}

TCGA ovarian serous cystadenocarcinoma (OV) reverse phase protein array

{"start_index":1,"owner":"TCGA","longTitle":"TCGA ovarian serous cystadenocarcinoma (OV) somatic mutation (bcm SOLiD curated)","cohort":"TCGA Ovarian Cancer (OV)","url":"https://tcga-data.nci.nih.gov/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/ov/gsc/hgsc.bcm.edu/solid_dnaseq_curated/mutations/","dataSubType":"somatic mutation (SNPs and small INDELs)","security":"public","label":"bcm SOLiD curated","method":"Baylor pipeline","tags":["cancer"],"path":"data/public/TCGA/OV/mutation_curated_bcm_solid","anatomical_origin":["Ovary"],"name":"TCGA.OV.sampleMap/mutation_curated_bcm_solid","dataproducer":"Baylor College of Medicine Human Genome Sequencing Center","wrangling_procedure":"Download .maf file from TCGA DCC, removed any calls from WGS samples, processed into UCSC Xena mutation format, stored in the UCSC Xena repository","sample_type":["tumor"],"assembly":"hg18","redistribution":true,"domain":"TCGA","type":"mutationVector","wrangler":"TCGAscript maf processed on 2017-10-16","version":"2017-10-16","target":"whole exome","gdata_tags":["Baylor College of Medicine Human Genome Sequencing Center"],"primary_disease":"ovarian serous cystadenocarcinoma","platform":"SOLiD","description":"TCGA ovarian serous cystadenocarcinoma (OV) somatic mutation data. Sequencing data are generated on a SOLiD system. The calls are generated at Baylor College of Medicine Human Genome Sequencing Center using the Baylor pipeline method."}