{"cohort":"PCAWG (donor centric)","url":"https://www.synapse.org/#!Synapse:syn10389164, https://www.synapse.org/#!Synapse:syn4974831, https://wiki.oicr.on.ca/pages/viewpage.action?pageId=57771274","dataSubType":"phenotype","label":"tumour histology","name":"pcawg_specimen_histology_August2016_v9_donor","wrangling_procedure":"Download specimen histology data pcawg_specimen_histology_August2016_v9 from synapse, data are mapped from specimen id to donor id.  Only tumor data are kept. When multiple specimens are available per donor and their histology values are different, values are concatenated and assigned to the donor.","customcolor":{"description":{"url":"https://docs.google.com/spreadsheets/d/17zFEZIs4y1oD_gjYLXZGlFOpxxNmqpMr-UKIG-X1nMk/edit"},"histology_abbreviation":{"Myeloid-AML":"#CD6600","Bone-Leiomyo":"#FFEC8B","Head-SCC":"#8B2323","Breast-DCIS":"#DDCDCD","Breast-AdenoCA":"#CD6090","Panc-Endocrine":"#E066FF","Bladder-TCC":"#EEAD0E","Skin-Melanoma":"#000000","Uterus-AdenoCA":"#FF8C69","CNS-PiloAstro":"#B0B0B0","Myeloid-MPN":"#FFC100","Lung-AdenoCA":"#FFFFFF","Kidney-RCC":"#FF4500","Ovary-AdenoCA":"#008B8B","CNS-GBM":"#3D3D3D","Lymph-CLL":"#F4A35D","Bone-Epith":"#ADAC44","Eso-AdenoCA":"#1E90FF","ColoRect-AdenoCA":"#191970","CNS-Medullo":"#D8BFD8","Lymph-NOS":"#DDCDCD","Lung-SCC":"#FDF5E6","Bone-Osteosarc":"#FFD700","Liver-HCC":"#006400","Cervix-AdenoCA":"#DDCDCD","Lymph-BNHL":"#698B22","Kidney-ChRCC":"#B32F0B","Thy-AdenoCA":"#9370DB","Panc-AdenoCA":"#7A378B","Bone-Cart":"#DDCDCD","Prost-AdenoCA":"#87CEFA","Biliary-AdenoCA":"#00CD66","Breast-LobularCA":"#DDCDCD","Stomach-AdenoCA":"#BFEFFF","CNS-Oligo":"#787878","Cervix-SCC":"#79CDCD","Myeloid-MDS":"#DDCDCD"},"histology_tier2":{"Stomach":"#BFEFFF","Skin":"#000000","Lymphoid":"#698B22","Thyroid":"#9370DB","Myeloid":"#CD6600","Head/Neck":"#8B2323","Prostate":"#87CEFA","Pancreas":"#7A378B","Ovary":"#008B8B","Colon.Rectum":"#191970","Breast":"#CD6090","Uterus":"#FF8C69","Liver":"#006400","Bladder":"#EEAD0E","Lung":"#FDF5E6","Kidney":"#FF4500","Bone/Softtissue":"#FFEC8B","CNS":"#787878","Esophagus":"#1E90FF","Biliary":"#00CD66","Cervix":"#79CDCD"}},"clinicalfeature":"clinicalFeatureHistology_donor","type":"clinicalMatrix","version":"2017-09-21","description":"PCAWG-13/10 workig groups results. The dataset contains specimen histological fields, including tumour subtypes"}