{"start_index":1,"cohort":"GDC TCGA Ocular melanomas (UVM)","url":"https://docs.gdc.cancer.gov/Data/Release_Notes/Data_Release_Notes/#data-release-100, https://api.gdc.cancer.gov/data/6c7b01bc-b068-4e01-8b4d-0362f5959f65","dataSubType":"somatic mutation (SNPs and small INDELs)","label":"MuTect2 Variant Aggregation and Masking","name":"TCGA-UVM/Xena_Matrices/TCGA-UVM.mutect2_snv.tsv","dataproducer":"Genomic Data Commons","wrangling_procedure":"Data from different samples is combined into mutationVector; \"Hugo_Symbol\", \"Chromosome\", \"Start_Position\", \"End_Position\", \"Reference_Allele\", \"Tumor_Seq_Allele2\", \"Tumor_Sample_Barcode\", \"HGVSp_Short\" and \"Consequence\" data are renamed accordingly and presented; \"dna_vaf\" data is added and is calculated by \"t_alt_count\"/\"t_depth\".","assembly":"hg38","type":"mutationVector","wrangler":"Xena GDC ETL script","version":"02-04-2018","platform":"Illumina"}

{"start_index":1,"cohort":"GDC TCGA Ocular melanomas (UVM)","url":"https://docs.gdc.cancer.gov/Data/Release_Notes/Data_Release_Notes/#data-release-100, https://api.gdc.cancer.gov/data/798f210d-921a-4e19-959e-9a9caf0051a8","dataSubType":"somatic mutation (SNPs and small INDELs)","label":"SomaticSniper Variant Aggregation and Masking","name":"TCGA-UVM/Xena_Matrices/TCGA-UVM.somaticsniper_snv.tsv","dataproducer":"Genomic Data Commons","wrangling_procedure":"Data from different samples is combined into mutationVector; \"Hugo_Symbol\", \"Chromosome\", \"Start_Position\", \"End_Position\", \"Reference_Allele\", \"Tumor_Seq_Allele2\", \"Tumor_Sample_Barcode\", \"HGVSp_Short\" and \"Consequence\" data are renamed accordingly and presented; \"dna_vaf\" data is added and is calculated by \"t_alt_count\"/\"t_depth\".","assembly":"hg38","type":"mutationVector","wrangler":"Xena GDC ETL script","version":"02-04-2018","platform":"Illumina"}

{"name":"TCGA-UVM/Xena_Matrices/TCGA-UVM.survival.tsv","cohort":"GDC TCGA Ocular melanomas (UVM)","url":"https://docs.gdc.cancer.gov/Data/Release_Notes/Data_Release_Notes/#data-release-90, https://api.gdc.cancer.gov/data/","dataSubType":"phenotype","dataproducer":"Genomic Data Commons","label":"survival data","type":"clinicalMatrix","wrangler":"Xena GDC ETL script","version":"10-25-2017"}