76-gene Prognostic Signature Lymph-Node-Negative Gene Expression (Desmedt et al. CCR 2007)

{"name":"desmedt2007_public/desmedt2007_public_clinicalMatrix","cohort":"Node-negative breast cancer (Desmedt 2007)","clinicalfeature":"desmedt2007_public/desmedt2007_public_clinicalFeature","label":"Phenotypes","version":"2011-11-11","type":"clinicalMatrix","dataSubType":"phenotype","url":"http://clincancerres.aacrjournals.org/content/13/11/3207, https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE7390, https://www.ncbi.nlm.nih.gov/geo/download/?acc=GSE7390&format=file&file=GSE7390%5Ftransbig2006affy%5Fdemo%2Etxt%2Egz, https://www.ncbi.nlm.nih.gov/geo/download/?acc=GSE7390&format=file&file=GSE7390%5Ftransbig2006affy%5FREADME%2Etxt"}

{"longTitle":"CGH (Etemadmoghadam et al. 2009)","cohort":"Ovarian Cancer (Etemadmoghadam 2009)","url":"http://www.ncbi.nlm.nih.gov/pubmed/19193619","probeMap":"probeMap/probesAffy100K","dataSubType":"copy number","citation":"Clin Cancer Res 2009 Feb 15;15(4):1417-27","label":"Etemadmoghadam CGH","articletitle":"Integrated genome-wide DNA copy number and expression analysis identifies distinct mechanisms of primary chemoresistance in ovarian carcinomas","tags":["cancer"],"anatomical_origin":["Ovarian"],"name":"etemadmoghadam2009_public/etemadmoghadam2009_CGH_genomicMatrix","dataproducer":"Etemadmoghadam D, deFazio A, Beroukhim R, Mermel C, George J, Getz G, Tothill R, Okamoto A, Raeder MB, Harnett P, Lade S, Akslen LA, Tinker AV, Locandro B, Alsop K, Chiew YE, Traficante N, Fereday S, Johnson D, Fox S, Sellers W, Urashima M, Salvesen HB, Meyerson M, Bowtell D","wrangling_procedure":"SOFT file was obtained from GEO (<A HREF=\"http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE13813\">link to GEO entry</A>). Coordinates for probes were obtained from the Affymetrix website to convert this into a bed15 format. Clinical data was obtained from GEO and merged with that of entry GSE9891.","sample_type":["tumor"],"type":"genomicMatrix","wrangler":"Chris Szeto","version":"2011-11-01","primary_disease":"ovarian cancer"}