{"name":"CornLab/bh_tsne.map","type":"clinicalMatrix","cohort":"Haematopoietic Stem Cells (Corn lab unpublished)","version":"2018-02-13","dataSubType":"map"}

{"name":"gencode.v27.annotation.gene.probemap","type":"probeMap","version":"2018-02-10","assembly":"hg38","xdb":"genecode Release 27 (GRCh38.p10)","url":"ftp://ftp.sanger.ac.uk/pub/gencode/Gencode_human/release_27/gencode.v27.annotation.gtf.gz","note":"comprehensive annotation, gene only"}

{"name":"CornLab/matrix_deseq2_norm.tsv","type":"genomicMatrix","label":"gene expression (UMI count DESeq2 normalized)","version":"2018-02-16","cohort":"Haematopoietic Stem Cells (Corn lab unpublished)","dataSubType":"single cell RNAseq gene expression","colnormalization":"log2(x)","unit":"UMI count (DESeq2 normalized)","probeMap":"gencode.v27.annotation.gene.probemap"}

{"name":"CornLab/matrix.tsv","type":"genomicMatrix","label":"gene expression (UMI count)","version":"2018-02-06","cohort":"Haematopoietic Stem Cells (Corn lab unpublished)","dataSubType":"single cell RNAseq gene expression","colnormalization":"log2(x)","unit":"UMI count","probeMap":"gencode.v27.annotation.gene.probemap"}

{"name":"CornLab/bh_tsne_deseq2.map","type":"clinicalMatrix","cohort":"Haematopoietic Stem Cells (Corn lab unpublished)","version":"2018-02-13","dataSubType":"map"}

{"name":"HCA/Census_of_Immune_Cells/barcode_phenotype.matrix","type":"clinicalMatrix","label":"cell specimen donor metadata","dataSubType":"phenotype","cohort":"HCA Census of Immune Cells","url":"https://prod.data.humancellatlas.org/explore/projects/179bf9e6-5b33-4c5b-ae26-96c7270976b8","version":"2019-03-15"}

{"name":"HCA_h5_GRCh38.90.PAR_Y.gene.probeMap","type":"probeMap","version":"2019-03-18","url":"https://support.10xgenomics.com/single-cell-gene-expression/software/release-notes/build#grch38_3.0.0, ftp://ftp.ensembl.org/pub/release-90/gtf/homo_sapiens/Homo_sapiens.GRCh38.90.gtf.gz, https://www.gencodegenes.org/human/release_27.html, ftp://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_human/release_27/gencode.v27.annotation.gtf.gz","assembly":"hg38","note":"download Homo_sapiens.GRCh38.90.gtf from ensemble, added PAR_Y genes from gencode release 27 (GRCH38.p10), filtered to only genes in HCA h5 files which 10x genomic cell ranger pipeline used as gene annotation reference, see 10x genomics https://support.10xgenomics.com/single-cell-gene-expression/software/release-notes/build#grch38_3.0.0 for detail"}