{"name":"Zeisel/Zeisel_expression_phenotype","type":"clinicalMatrix","version":"2017-03-03","cohort":"Single-cell RNA-seq mouse cortex (Zeisel)","label":"phenotype and annotations","url":"http://science.sciencemag.org/content/347/6226/1138, https://storage.googleapis.com/linnarsson-lab-www-blobs/blobs/cortex/expression_mRNA_17-Aug-2014.txt","dataSubType":"phenotype","clinicalfeature":"Zeisel/Zeisel_clinFeature"}

{"longTitle":"Copy number variations in the PCGP project public data","cohort":"St Jude PCGP pan-cancer","url":"http://explorepcgp.org/, http://www.ncbi.nlm.nih.gov/pubmed/23153540, http://www.ncbi.nlm.nih.gov/pubmed/22237106, http://www.ncbi.nlm.nih.gov/pubmed/23334668, http://www.ncbi.nlm.nih.gov/pubmed/22722829, http://www.ncbi.nlm.nih.gov/pubmed/23583981, http://www.ncbi.nlm.nih.gov/pubmed/22237022, http://www.ncbi.nlm.nih.gov/pubmed/24332040","probeMap":"StJudePCGP/pan-pcgp_cnv_probemap","dataSubType":"copy number","label":"Copy number variation","name":"StJudePCGP/pan-pcgp_cnv","wrangling_procedure":"Data of all disease types (7 types, hg19, Log2 Ratio Values) is downloaded from http://explorepcgp.org/, convert to matrix format using galaxyxena, loaded to UCSC Xena Hub.","type":"genomicMatrix","version":"2015-09-29","description":"Copy number variations (in Log2 ratio) in the PCGP project public data collection. The pan-cancer PCGP cohort includes tumors of Acute megakaryoblastic leukemia, T-cell precursor acute lymphoblastic leukaemia, Hypodiploid Acute Lymphoblastic Leukemia, Medulloblastoma, Low-Grade Gliomas, Retinoblastoma, and Rhabdomyosarcoma."}

Copy number variations in the PCGP project public data

{"longTitle":"Copy number variations (gene-level) in the PCGP project public data","cohort":"St Jude PCGP pan-cancer","url":"http://explorepcgp.org/, http://www.ncbi.nlm.nih.gov/pubmed/23153540, http://www.ncbi.nlm.nih.gov/pubmed/22237106, http://www.ncbi.nlm.nih.gov/pubmed/23334668, http://www.ncbi.nlm.nih.gov/pubmed/22722829, http://www.ncbi.nlm.nih.gov/pubmed/23583981, http://www.ncbi.nlm.nih.gov/pubmed/22237022, http://www.ncbi.nlm.nih.gov/pubmed/24332040","dataSubType":"copy number","label":"Copy number variation (gene-level)","name":"StJudePCGP/pan-pcgp_cnv_gene","wrangling_procedure":"Data of all disease types (7 types, hg19, Log2 Ratio Values) is downloaded from http://explorepcgp.org/, convert to gene-level matrix format using galaxyxena, loaded to UCSC Xena Hub.","type":"genomicMatrix","version":"2015-09-29","description":"Copy number variations (gene-level, in Log2 ratio) in the PCGP project public data collection. The pan-cancer PCGP cohort includes tumors of Acute megakaryoblastic leukemia, T-cell precursor acute lymphoblastic leukaemia, Hypodiploid Acute Lymphoblastic Leukemia, Medulloblastoma, Low-Grade Gliomas, Retinoblastoma, and Rhabdomyosarcoma."}