TCGA pan-cancer gene-level copy number (gistic2_thresholded)

{"cohort":"TCGA Pan-Cancer (PANCAN)","url":"https://tcga-data.nci.nih.gov/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/","dataSubType":"copy number segments","label":"Before remove germline cnv","tags":["cancer","non-small cell lung cancer","gastric cancer","pancancer","Adrenal gland","Esophagus","Rectum","Endometrium","Brian","Head and Neck region","Thymus","Lung","Blood","Soft tissue","Bone","Stomach","Colon and Rectum","Prostate","Breast","Ovary","Kidney","Lymphatic tissue","Brain","Thyroid Gland","Bladder","Paraganglia","Cervix","Uterus","Liver","Bile duct","Eye","Skin","Colon","Testis","Lining of body cavities","White blood cell","Pancreas"],"anatomical_origin":"","name":"TCGA.PANCAN.sampleMap/SNP6_genomicSegment","dataproducer":"UCSC Xena team","wrangling_procedure":"Data is combined from all TCGA cohorts and deposited into UCSC Xena repository","sample_type":["tumor"],"assembly":"hg19","type":"genomicSegment","version":"2016-11-22","unit":"log(tumor/normal)","primary_disease":"cancer"}

{"longTitle":"TCGA pan-cancer exon expression (polyA+ IlluminaHiSeq)","cohort":"TCGA Pan-Cancer (PANCAN)","url":"https://tcga-data.nci.nih.gov/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/","probeMap":"unc_v2_exon_hg19_probe_TCGA","dataSubType":"exon expression RNAseq","security":"public","rnatype":["polyA+"],"label":"exon expression","tags":["cancer","non-small cell lung cancer","gastric cancer","pancancer","Adrenal gland","Esophagus","Rectum","Endometrium","Brian","Head and Neck region","Thymus","Lung","Blood","Soft tissue","Bone","Stomach","Colon and Rectum","Prostate","Breast","Ovary","Kidney","Lymphatic tissue","Brain","Thyroid Gland","Bladder","Paraganglia","Cervix","Uterus","Liver","Bile duct","Eye","Skin","Colon","Testis","Lining of body cavities","White blood cell","Pancreas"],"path":"/inside/home/jzhu/cgDataJing/TCGAscripts/preFreezeCAVM/TCGA/PANCAN/HiSeqV2_exon","anatomical_origin":"","name":"TCGA.PANCAN.sampleMap/HiSeqV2_exon","dataproducer":"UCSC Xena team","wrangling_procedure":"Data is combined from all TCGA cohorts and deposited into UCSC Xena repository","sample_type":["tumor"],"redistribution":true,"type":"genomicMatrix","version":"2016-08-16","unit":"log2(RPKM+1)","shortTitle":"exon expression","primary_disease":"cancer","colnormalization":true,"description":"TCGA pan-cancer exon expression by RNAseq,compiled using data from all TCGA cohorts. Exon expression was measured using the IlluminaHiSeq technology. Data from all TCGA cohorts are combined to produce this dataset. Values are log2(RPKM+1) transformed exon-level transcription estimates in RPKM values (Reads Per Kilobase of exon model per Million mapped reads).<br><br>"}