{"name":"TCGA_pancancer_10852whitelistsamples_68ImmuneSigs.xena","loader":{"duplicate-probes":[],"duplicate-keys":{"sampleID":[]},"duplicate-keys":{"sampleID":["TCGA-06-0211-01","TCGA-DU-6404-02","TCGA-06-0156-01","TCGA-DU-6407-02","TCGA-DD-AACA-02","TCGA-21-1076-01","TCGA-TQ-A7RK-02","TCGA-FG-5965-02"]}},"cohort":"TCGA Pan-Cancer (PANCAN)","type":"clinicalMatrix","label":"Immune Signature Scores (Denise Wolf et al)","dataSubType":"signatures","url":"https://www.synapse.org/#!Synapse:syn6165991","version":"2016-12-29"}

{"name":"TreehousePEDv5_clinical_metadata.2018-05-09.tsv","dataSubType":"phenotype","cohort":"Treehouse PED v5 April 2018","description":"Age, gender, and disease are provided for RNASeq samples compiled by the UCSC Treehouse Childhood Cancer Initiative. Samples derived from clinical sites, publicly available repositories, TARGET, and TCGA.","label":"clinical (limited)","type":"clinicalMatrix","version":"2018-04-09"}

{"url":"ftp://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_human/release_23/gencode.v23.annotation.gtf.gz","idtype":"gene","userlevel":"basic","label":"Gene: GENCODE 23 comprehensive (hg38) e.g. ENSG00000223972.5","note":"comprehensive annotation, gene only","name":"gencode.v23.annotation.gene.probemap","xdb":"genecode Release 23 (GRCh38.p3)","assembly":"hg38","type":"probeMap","version":"2018-07-13"}

{"cohort":"Treehouse PED v5 April 2018","probeMap":"gencode.v23.annotation.gene.probemap","dataSubType":"gene expression RNAseq","label":"expected_count","name":"TreehousePEDv5_unique_ensembl_expected_count.2018-06-26.tsv","type":"genomicMatrix","version":"2018-06-26","unit":"expected_count","colnormalization":true,"description":"Treehouse Public Expression Dataset v5 (April 2018). Treehouse RNASeq gene expression data. Values in this dataset are expected_count and use Ensembl gene identifiers. This data was generated by the polyA selection library preparation method."}

{"name":"TreehousePEDv5_unique_hugo_log2_tpm_plus_1.2018-05-09.tsv","dataSubType":"gene expression RNAseq","cohort":"Treehouse PED v5 April 2018","colnormalization":true,"description":"Treehouse Public Expression Dataset v5 (April 2018). Treehouse RNASeq gene expression data. Values in this dataset use HUGO gene names and are transformed by log2(x +1) of the TPM value. This data was generated by the polyA selection library preparation method.","label":"log2(TPM + 1) normalized","type":"genomicMatrix","version":"2018-04-09","unit":"log2(tpm+1)"}