TCGA ovarian serous cystadenocarcinoma (OV) gene expression (AffyU133a array)

{"start_index":1,"owner":"TCGA","longTitle":"TCGA ovarian serous cystadenocarcinoma (OV) somatic mutation (bcm SOLiD)","cohort":"TCGA Ovarian Cancer (OV)","url":"https://tcga-data.nci.nih.gov/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/ov/gsc/hgsc.bcm.edu/solid_dnaseq/mutations/","dataSubType":"somatic mutation (SNPs and small INDELs)","security":"public","label":"bcm SOLiD","method":"Baylor pipeline","tags":["cancer"],"path":"data/public/TCGA/OV/mutation_bcm_solid","anatomical_origin":["Ovary"],"name":"TCGA.OV.sampleMap/mutation_bcm_solid","dataproducer":"Baylor College of Medicine Human Genome Sequencing Center","wrangling_procedure":"Download .maf file from TCGA DCC, removed any calls from WGS samples, processed into UCSC Xena mutation format, stored in the UCSC Xena repository","sample_type":["tumor"],"assembly":"hg18","redistribution":true,"domain":"TCGA","type":"mutationVector","wrangler":"TCGAscript maf processed on 2017-10-16","version":"2017-10-16","target":"whole exome","gdata_tags":["Baylor College of Medicine Human Genome Sequencing Center"],"primary_disease":"ovarian serous cystadenocarcinoma","platform":"SOLiD","description":"TCGA ovarian serous cystadenocarcinoma (OV) somatic mutation data. Sequencing data are generated on a SOLiD system. The calls are generated at Baylor College of Medicine Human Genome Sequencing Center using the Baylor pipeline method."}

TCGA ovarian serous cystadenocarcinoma (OV) somatic mutation (bcm SOLiD)

TCGA ovarian serous cystadenocarcinoma (OV) gene expression by RNAseq (polyA+ IlluminaHiSeq percentile UNC)

TCGA ovarian serous cystadenocarcinoma (OV) gene expression by RNAseq (ployA+ IlluminaHiSeq), pancan normalized

TCGA ovarian serous cystadenocarcinoma (OV) gene expression by RNAseq (polyA+ IlluminaHiSeq UNC)

TCGA ovarian serous cystadenocarcinoma (OV) gene expression by RNAseq (polyA+ IlluminaHiSeq BC)

{"longTitle":"TCGA ovarian serous cystadenocarcinoma (OV) gene-level nonsilent somatic mutation (bcm SOLiD)","cohort":"TCGA Ovarian Cancer (OV)","url":"https://tcga-data.nci.nih.gov/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/ov/gsc/hgsc.bcm.edu/solid_dnaseq/mutations/","probeMap":"probeMap/hugo_refgene_good_hg18_probemap","dataSubType":"somatic non-silent mutation (gene-level)","security":"public","label":"bcm SOLiD","method":"Baylor pipeline","tags":["cancer"],"path":"data/public/TCGA/OV/mutation_bcm_solid_gene","anatomical_origin":["Ovary"],"name":"TCGA.OV.sampleMap/mutation_bcm_solid_gene","dataproducer":"Baylor College of Medicine Human Genome Sequencing Center","wrangling_procedure":"Download .maf file from TCGA DCC, processed into gene by sample matrix at UCSC, stored in the UCSC Xena repository","sample_type":["tumor"],"redistribution":true,"type":"genomicMatrix","wrangler":"xena TCGAscript maf processed on 2018-01-12","version":"2018-01-12","gdata_tags":["Baylor College of Medicine Human Genome Sequencing Center"],"unit":"binary non-silent mutation","primary_disease":"ovarian serous cystadenocarcinoma","platform":"SOLiD","description":"TCGA ovarian serous cystadenocarcinoma (OV) somatic mutation data.  Sequencing data are generated on a SOLiD system. The calls are generated at Baylor College of Medicine Human Genome Sequencing Center using the Baylor pipeline method. <br><br> Red (=1) indicates that a non-silent somatic mutation (nonsense, missense, frame-shif indels, splice site mutations, stop codon readthroughs, change of start codon, inframe indels) was identified in the protein coding region of a gene, or any mutation identified in a non-coding gene. White (=0) indicates that none of the above mutation calls were made in this gene for the specific sample.<br><br>"}