TCGA pheochromocytoma and paraganglioma (PCPG) somatic mutation (bcgsc automated)

{"longTitle":"TCGA pheochromocytoma and paraganglioma (PCPG) gene-level nonsilent somatic mutation (broad automated)","cohort":"TCGA Pheochromocytoma & Paraganglioma (PCPG)","url":"https://tcga-data.nci.nih.gov/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/pcpg/gsc/broad.mit.edu/illuminaga_dnaseq_automated/mutations/","probeMap":"probeMap/hugo_gencode_good_hg19_V24lift37_probemap","dataSubType":"somatic non-silent mutation (gene-level)","security":"public","label":"broad automated","method":"MuTect","tags":["cancer"],"path":"data/public/TCGA/PCPG/mutation_broad_gene","anatomical_origin":["Paraganglia"],"name":"TCGA.PCPG.sampleMap/mutation_broad_gene","dataproducer":"Broad Institute Genome Sequencing Center","wrangling_procedure":"Download .maf file from TCGA DCC, processed into gene by sample matrix at UCSC, stored in the UCSC Xena repository","sample_type":["tumor"],"redistribution":true,"type":"genomicMatrix","wrangler":"xena TCGAscript maf processed on 2018-01-12","version":"2018-01-12","gdata_tags":["Broad Institute Genome Sequencing Center"],"unit":"binary non-silent mutation","primary_disease":"pheochromocytoma & paraganglioma","platform":"IlluminaGA","description":"TCGA pheochromocytoma and paraganglioma (PCPG) somatic mutation data.  Sequencing data are generated on a IlluminaGA system. The calls are generated at Broad Institute Genome Sequencing Center using the MuTect method. <br><br> Red (=1) indicates that a non-silent somatic mutation (nonsense, missense, frame-shif indels, splice site mutations, stop codon readthroughs, change of start codon, inframe indels) was identified in the protein coding region of a gene, or any mutation identified in a non-coding gene. White (=0) indicates that none of the above mutation calls were made in this gene for the specific sample.<br><br>"}

TCGA pheochromocytoma and paraganglioma (PCPG) gene-level nonsilent somatic mutation (broad automated)