TARGET high-risk neuroblastoma copy number profile

TARGET high-risk neuroblastoma gene-level non-silent mutation and ATRX focal deletion (Pugh, Morozova 2012)

TARGET high-risk neuroblastoma mutation (Pugh, Morozova 2012)

{"url":"http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GPL5188","idtype":"probe","userlevel":"basic","group":"AffymetrixHumanExon1.0ST","label":"Affy HumanExon1.0ST (hg18) e.g. 2315101","name":"probeMap/AffymetrixHumanExon1ST_hg18","assembly":"hg18","type":"probeMap","version":"2014-04-16","xref":"GPL5188"}

{"longTitle":"TARGET high-risk neuroblastoma gene expression by microarray","cohort":"TARGET neuroblastoma","url":"http://target.nci.nih.gov/dataMatrix/TARGET_DataMatrix.html, ftp://caftpd.nci.nih.gov/pub/dcc_target/NBL/gene_expression_array/L3/transcript/Full/","probeMap":"probeMap/AffymetrixHumanExon1ST_hg18","dataSubType":"gene expression array","label":"Array gene expression","tags":["cancer","Childhood","pediatrics","sympathetic nervous system","neural crest","neuroendocrine"],"anatomical_origin":["Adrenal gland"],"name":"TARGET_neuroblastoma/rma.Target190.Probeset.Full","dataproducer":"NCI TARGET project: Therapeutically Applicable Research To Generate Effective Treatments","sample_type":["tumor"],"type":"genomicMatrix","version":"2014-04-15","gdata_tags":["transcription","mRNA"],"unit":"rma","primary_disease":"pediatric high-risk neuroblastoma","colnormalization":true,"description":"TARGET neuroblastoma gene expression variation dataset by Affymetrix Exon ST microarray. <br><br>Neuroblastoma is an embryonal malignancy of early childhood with a poor prognosis for individuals diagnosed at over 18 months of age with disseminated disease, accounting for 12% of all childhood cancer-related deaths.<br><br>"}

TARGET high-risk neuroblastoma gene expression by microarray

{"name":"probeMap/illuminaMethyl27K_hg18_gpl8490_TCGAlegacy","assembly":"hg18","dbxref":"xena:illuminaMethyl27K_hg18_gpl8490","type":"probeMap","version":"2018-07-24","idtype":"probe","label":"Infinium HumanMethylation27 array TCGA legacy version (hg18) e.g. cg26211698","userlevel":"basic","wrangling_procedure":"start with illuminaMethyl27K_hg18_gpl8490, remove all probes that are masked by the TCGA methylation group due to probe quality, there are no level 3 data for those probes in TCGA legacy data release"}