TCGA colon adenocarcinoma (COAD) gene-level nonsilent somatic mutation (bcm)

TCGA colon adenocarcinoma (COAD) DNA methylation (HumanMethylation450)

{"longTitle":"TCGA colon adenocarcinoma (COAD) copy number gistic2 estimate","cohort":"TCGA Colon Cancer (COAD)","url":"http://gdac.broadinstitute.org/runs/analyses__2016_01_28/data/COAD/20160128/","dataSubType":"copy number (gene-level)","security":"public","label":"gistic2","tags":["cancer"],"path":"data/public/TCGA/COAD/Gistic2_CopyNumber_Gistic2_all_data_by_genes","anatomical_origin":["Colon"],"name":"TCGA.COAD.sampleMap/Gistic2_CopyNumber_Gistic2_all_data_by_genes","dataproducer":"TCGA FIREHOSE pipeline","wrangling_procedure":"FIREHOSE data download from TCGA DCC, processed at UCSC into xena repository","sample_type":["tumor"],"redistribution":true,"groupTitle":"TCGA colon adenocarcinoma","type":"genomicMatrix","wrangler":"xena TCGAscript CopyNumber_Gistic2 processed on 2017-09-08","version":"2017-09-08","unit":"Gistic2 copy number","primary_disease":"colon adenocarcinoma","description":"TCGA colon adenocarcinoma (COAD) gene-level copy number variation (CNV) estimated using the GISTIC2 method.<br><br> Copy number profile was measured experimentally using whole genome microarray at a TCGA genome characterization center. Subsequently, TCGA FIREHOSE pipeline applied GISTIC2 method to produce segmented CNV data, which was then mapped to genes to produce gene-level estimates. Genes are mapped onto the human genome coordinates using UCSC xena HUGO probeMap. Reference to GISTIC2 method PMID:21527027.<br><br>"}

TCGA colon adenocarcinoma (COAD) copy number gistic2 estimate

{"cgdataversion":1,"owner":"TCGA","longTitle":"TCGA colon adenocarcinoma (COAD) phospho- or total protein expression by reverse phase protein array (replicate-base normalization)","cohort":"TCGA Colon Cancer (COAD)","url":"https://www.synapse.org/#!Synapse:syn1759392","dataSubType":"protein expression RPPA","security":"public","label":"RPPA (replicate-base normalization)","tags":["cancer"],"path":"data/public/TCGA/COAD/RPPA_RBN","anatomical_origin":["Colon"],"name":"TCGA.COAD.sampleMap/RPPA_RBN","dataproducer":"MDACC","wrangling_procedure":"Data download from https://www.synapse.org/#!Synapse:syn1759392, processed into antibody by sample matrix at UCSC into Xena repository","sample_type":["tumor"],"redistribution":true,"domain":"TCGA","groupTitle":"TCGA colon adenocarcinoma","type":"genomicMatrix","wrangler":"cgData TCGAscript RPPA_RBN processed on 2017-09-08","version":"2017-09-08","unit":"RBN normalized RPPA value","primary_disease":"colon adenocarcinoma","description":"TCGA colon adenocarcinoma (COAD) protein expression data for 131 proteins, measured by RPPA (reverse phase protein array) technology. These data have been normalized by RBN (replicate-base normalization) method developed by MDACC. Details: https://www.synapse.org/#!Synapse:syn1750330 and http://bioinformatics.mdanderson.org/main/TCPA:Overview.<br><br>"}