--- a +++ b/paper/paper.bib @@ -0,0 +1,69 @@ +@article{goldman2019ucsc, + title={The UCSC Xena Platform for cancer genomics data visualization and interpretation}, + author={Goldman, Mary and Craft, Brian and Hastie, Mim and Repe{\v{c}}ka, Kristupas and Kamath, Akhil and McDade, Fran and Rogers, Dave and Brooks, Angela N and Zhu, Jingchun and Haussler, David}, + journal={BioRxiv}, + pages={326470}, + year={2019}, + publisher={Cold Spring Harbor Laboratory} +} + +@article{weinstein2013cancer, + title={The cancer genome atlas pan-cancer analysis project}, + author={Weinstein, John N and Collisson, Eric A and Mills, Gordon B and Shaw, Kenna R Mills and Ozenberger, Brad A and Ellrott, Kyle and Shmulevich, Ilya and Sander, Chris and Stuart, Joshua M and Cancer Genome Atlas Research Network and others}, + journal={Nature genetics}, + volume={45}, + number={10}, + pages={1113}, + year={2013}, + publisher={Nature Publishing Group} +} + +@article{zhang2011international, + title={International Cancer Genome Consortium Data Portal—a one-stop shop for cancer genomics data}, + author={Zhang, Junjun and Baran, Joachim and Cros, Anthony and Guberman, Jonathan M and Haider, Syed and Hsu, Jack and Liang, Yong and Rivkin, Elena and Wang, Jianxin and Whitty, Brett and others}, + journal={Database}, + volume={2011}, + year={2011}, + publisher={Oxford University Press} +} + +@article{barretina2012cancer, + title={The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity}, + author={Barretina, Jordi and Caponigro, Giordano and Stransky, Nicolas and Venkatesan, Kavitha and Margolin, Adam A and Kim, Sungjoon and Wilson, Christopher J and Leh{\'a}r, Joseph and Kryukov, Gregory V and Sonkin, Dmitriy and others}, + journal={Nature}, + volume={483}, + number={7391}, + pages={603}, + year={2012}, + publisher={Nature Publishing Group} +} + +@article{mullighan2008genomic, + title={Genomic analysis of the clonal origins of relapsed acute lymphoblastic leukemia}, + author={Mullighan, Charles G and Phillips, Letha A and Su, Xiaoping and Ma, Jing and Miller, Christopher B and Shurtleff, Sheila A and Downing, James R}, + journal={Science}, + volume={322}, + number={5906}, + pages={1377--1380}, + year={2008}, + publisher={American Association for the Advancement of Science} +} + +@article{puram2017single, + title={Single-cell transcriptomic analysis of primary and metastatic tumor ecosystems in head and neck cancer}, + author={Puram, Sidharth V and Tirosh, Itay and Parikh, Anuraag S and Patel, Anoop P and Yizhak, Keren and Gillespie, Shawn and Rodman, Christopher and Luo, Christina L and Mroz, Edmund A and Emerick, Kevin S and others}, + journal={Cell}, + volume={171}, + number={7}, + pages={1611--1624}, + year={2017}, + publisher={Elsevier} +} + +@article{wickham2015dplyr, + title={dplyr: A grammar of data manipulation}, + author={Wickham, Hadley and Francois, Romain and Henry, Lionel and M{\"u}ller, Kirill and others}, + journal={R package version 0.4}, + volume={3}, + year={2015} +}