--- a +++ b/_pkgdown.yml @@ -0,0 +1,55 @@ +destination: docs + +authors: + Shixiang Wang: + href: https://shixiangwang.github.io/ + +reference: + - title: Standard dataset query and download pipeline + desc: Select, query, download and load datasets. + contents: + - XenaData + - XenaScan + - XenaGenerate + - XenaFilter + - XenaBrowse + - XenaQuery + - XenaDownload + - XenaPrepare + - title: Download a subset of dataset + desc: Download a subset of dataset for target analysis. + contents: + - fetch_dense_values + - fetch_dataset_samples + - fetch_dataset_identifiers + - fetch + - title: One-click download function + desc: Download datasets by setting options in one function. + contents: + - downloadTCGA + - getTCGAdata + - availTCGA + - showTCGA + - title: Utility + desc: Useful functions. + contents: + - XenaDataUpdate + - hosts + - cohorts + - datasets + - samples + - has_probeMap + - XenaQueryProbeMap + - title: Helpers + desc: Helper functions. + contents: + - xena_default_hosts + - to_snake + - title: Class + desc: Class and related function. + contents: + - XenaHub-class + - XenaHub + + +