destination: docs

authors:

  Shixiang Wang:

    href: https://shixiangwang.github.io/

reference:

  - title: Standard dataset query and download pipeline

    desc: Select, query, download and load datasets.

    contents:

    - XenaData

    - XenaScan

    - XenaGenerate

    - XenaFilter

    - XenaBrowse

    - XenaQuery

    - XenaDownload

    - XenaPrepare

  - title: Download a subset of dataset

    desc: Download a subset of dataset for target analysis.

    contents:

    - fetch_dense_values

    - fetch_dataset_samples

    - fetch_dataset_identifiers

    - fetch

  - title: One-click download function

    desc: Download datasets by setting options in one function.

    contents:

    - downloadTCGA

    - getTCGAdata

    - availTCGA

    - showTCGA

  - title: Utility

    desc: Useful functions.

    contents:

    - XenaDataUpdate

    - hosts

    - cohorts

    - datasets

    - samples

    - has_probeMap

    - XenaQueryProbeMap

  - title: Helpers

    desc: Helper functions.

    contents:

    - xena_default_hosts

    - to_snake

  - title: Class

    desc: Class and related function.

    contents:

    - XenaHub-class

    - XenaHub