[e25014]: / man / new_ggraph.Rd

Download this file

55 lines (43 with data), 1.3 kB

 1
 2
 3
 4
 5
 6
 7
 8
 9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/NewGgraph.R
\name{new_ggraph}
\alias{new_ggraph}
\title{Generate a graphical representation of pathway gene maps}
\usage{
new_ggraph(
BP_dataframe,
BP_ids,
KEGG_dataframe,
KEGG_ids,
MF_dataframe,
MF_ids,
REACTOME_dataframe,
REACTOME_ids,
CC_dataframe,
CC_ids,
DO_dataframe,
DO_ids
)
}
\arguments{
\item{BP_dataframe}{Dataframe for Biological Process.}
\item{BP_ids}{IDs for Biological Process.}
\item{KEGG_dataframe}{Dataframe for KEGG pathways.}
\item{KEGG_ids}{IDs for KEGG pathways.}
\item{MF_dataframe}{Dataframe for Molecular Function.}
\item{MF_ids}{IDs for Molecular Function.}
\item{REACTOME_dataframe}{Dataframe for REACTOME pathways.}
\item{REACTOME_ids}{IDs for REACTOME pathways.}
\item{CC_dataframe}{Dataframe for Cellular Component.}
\item{CC_ids}{IDs for Cellular Component.}
\item{DO_dataframe}{Dataframe for Disease Ontology.}
\item{DO_ids}{IDs for Disease Ontology.}
}
\value{
A 'ggraph' object representing the pathway gene map visualization.
}
\description{
This function merges multiple gene-pathway related dataframes, processes them
for graph creation, and visualizes the relationships in a dendrogram layout using
the provided node and edge gathering functions from the 'ggraph' package.
}