--- a
+++ b/man/prep_limma.Rd
@@ -0,0 +1,29 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/PrepLimma.R
+\name{prep_limma}
+\alias{prep_limma}
+\title{Prepare limma-voom DEG data for plotting}
+\usage{
+prep_limma(input_path, output_name = NULL)
+}
+\arguments{
+\item{input_path}{Path to the RDS file containing the limma-voom DEG data frame.}
+
+\item{output_name}{Name for the processed data frame, also used as the RDS file name.}
+}
+\value{
+A data frame with processed limma-voom DEG data.
+}
+\description{
+This function reads a limma-voom DEG data frame from an RDS file, filters it using
+\code{\link{deg_filter}} function, adjusts the logFC to absolute values, adds a pseudo-count to P.Value,
+and transforms P.Value for plotting. The final data frame is returned and
+optionally saved to a new RDS file.
+}
+\examples{
+limma_file <- system.file("extdata",
+                          "DEG_limma_voom_test.rds",
+                          package = "TransProR")
+limma <- prep_limma(limma_file)
+
+}