--- a
+++ b/man/prep_edgeR.Rd
@@ -0,0 +1,29 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/PrepEdgeR.R
+\name{prep_edgeR}
+\alias{prep_edgeR}
+\title{Prepare edgeR DEG data for plotting}
+\usage{
+prep_edgeR(input_path, output_name = NULL)
+}
+\arguments{
+\item{input_path}{Path to the RDS file containing the edgeR DEG data frame.}
+
+\item{output_name}{Name for the processed data frame, also used as the RDS file name.}
+}
+\value{
+A data frame with processed edgeR DEG data.
+}
+\description{
+This function reads an edgeR DEG data frame from an RDS file, filters it using
+\code{\link{deg_filter}} function, adjusts the logFC to absolute values, adds a pseudo-count to PValue,
+and transforms PValue for plotting. The final data frame is returned and
+optionally saved to a new RDS file.
+}
+\examples{
+edgeR_file <- system.file("extdata",
+                          "DEG_edgeR_test.rds",
+                          package = "TransProR")
+edgeR <- prep_edgeR(edgeR_file)
+
+}