% Generated by roxygen2: do not edit by hand

% Please edit documentation in R/PrepEdgeR.R

\name{prep_edgeR}

\alias{prep_edgeR}

\title{Prepare edgeR DEG data for plotting}

\usage{

prep_edgeR(input_path, output_name = NULL)

}

\arguments{

\item{input_path}{Path to the RDS file containing the edgeR DEG data frame.}

\item{output_name}{Name for the processed data frame, also used as the RDS file name.}

}

\value{

A data frame with processed edgeR DEG data.

}

\description{

This function reads an edgeR DEG data frame from an RDS file, filters it using

\code{\link{deg_filter}} function, adjusts the logFC to absolute values, adds a pseudo-count to PValue,

and transforms PValue for plotting. The final data frame is returned and

optionally saved to a new RDS file.

}

\examples{

edgeR_file <- system.file("extdata",

                          "DEG_edgeR_test.rds",

                          package = "TransProR")

edgeR <- prep_edgeR(edgeR_file)

}