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b/man/pathway_description.Rd |
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% Generated by roxygen2: do not edit by hand |
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% Please edit documentation in R/PathwayDescription.R |
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\name{pathway_description} |
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\alias{pathway_description} |
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\title{Describe Genes Present in Selected Pathways} |
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\usage{ |
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pathway_description(GO, selected_pathways_names, enrich_data) |
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} |
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\arguments{ |
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\item{GO}{A character vector of gene symbols.} |
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\item{selected_pathways_names}{A character vector specifying the names of selected pathways.} |
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\item{enrich_data}{A data frame containing pathway enrichment analysis results.} |
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} |
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\value{ |
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A data frame with columns "Symble" (gene symbol), "Description" (pathway description), and "Exists" (1 if gene is present, 0 otherwise). |
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} |
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\description{ |
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This function identifies genes present in selected pathways based on gene enrichment analysis results. |
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} |
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\examples{ |
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GO <- c("Gene1", "Gene2", "Gene3", "Gene4", "Gene5") |
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# Simulated enrichment analysis data |
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enrich_data <- data.frame( |
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ID = c("Pathway1", "Pathway2", "Pathway3", "Pathway4"), |
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Description = c("Apoptosis", "Cell Cycle", "Signal Transduction", "Metabolism"), |
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geneID = c("Gene1/Gene3", "Gene2/Gene4", "Gene1/Gene2/Gene3", "Gene5"), |
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Count = c(2, 2, 3, 1), |
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stringsAsFactors = FALSE |
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) |
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# Example usage |
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result <- pathway_description(GO, |
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selected_pathways_names="Apoptosis", |
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enrich_data) |
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} |