--- a
+++ b/man/pathway_count.Rd
@@ -0,0 +1,37 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/PathwayCount.R
+\name{pathway_count}
+\alias{pathway_count}
+\title{Count Genes Present in Pathways Above a Threshold}
+\usage{
+pathway_count(GO, count_threshold, enrich_data)
+}
+\arguments{
+\item{GO}{A character vector of gene symbols.}
+
+\item{count_threshold}{An integer specifying the count threshold for selecting pathways.}
+
+\item{enrich_data}{A data frame containing pathway enrichment analysis results.}
+}
+\value{
+A data frame with columns "Symble" (gene symbol), "Description" (pathway description), and "Exists" (1 if gene is present, 0 otherwise).
+}
+\description{
+This function filters pathways that meet a count threshold and then counts the presence of specified genes in those pathways.
+}
+\examples{
+# Simulated gene list
+GO <- c("Gene1", "Gene2", "Gene3", "Gene4", "Gene5")
+# Simulated enrichment analysis data
+enrich_data <- data.frame(
+  ID = c("GO:0001", "GO:0002", "GO:0003"),
+  Description = c("Pathway A", "Pathway B", "Pathway C"),
+  Count = c(10, 4, 6),
+  geneID = c("Gene1/Gene2/Gene3", "Gene4/Gene5", "Gene2/Gene6/Gene7")
+)
+
+# Example usage
+count_threshold <- 5
+result_df <- pathway_count(GO, count_threshold, enrich_data)
+
+}