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b/man/new_ggraph.Rd |
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% Generated by roxygen2: do not edit by hand |
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% Please edit documentation in R/NewGgraph.R |
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\name{new_ggraph} |
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\alias{new_ggraph} |
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\title{Generate a graphical representation of pathway gene maps} |
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\usage{ |
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new_ggraph( |
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BP_dataframe, |
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BP_ids, |
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KEGG_dataframe, |
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KEGG_ids, |
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MF_dataframe, |
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MF_ids, |
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REACTOME_dataframe, |
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REACTOME_ids, |
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CC_dataframe, |
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CC_ids, |
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DO_dataframe, |
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DO_ids |
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) |
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} |
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\arguments{ |
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\item{BP_dataframe}{Dataframe for Biological Process.} |
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\item{BP_ids}{IDs for Biological Process.} |
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\item{KEGG_dataframe}{Dataframe for KEGG pathways.} |
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\item{KEGG_ids}{IDs for KEGG pathways.} |
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\item{MF_dataframe}{Dataframe for Molecular Function.} |
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\item{MF_ids}{IDs for Molecular Function.} |
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\item{REACTOME_dataframe}{Dataframe for REACTOME pathways.} |
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\item{REACTOME_ids}{IDs for REACTOME pathways.} |
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\item{CC_dataframe}{Dataframe for Cellular Component.} |
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\item{CC_ids}{IDs for Cellular Component.} |
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\item{DO_dataframe}{Dataframe for Disease Ontology.} |
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\item{DO_ids}{IDs for Disease Ontology.} |
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} |
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\value{ |
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A 'ggraph' object representing the pathway gene map visualization. |
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} |
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\description{ |
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This function merges multiple gene-pathway related dataframes, processes them |
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for graph creation, and visualizes the relationships in a dendrogram layout using |
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the provided node and edge gathering functions from the 'ggraph' package. |
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} |