--- a
+++ b/man/get_gtex_exp.Rd
@@ -0,0 +1,49 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/GetGtexExp.R
+\name{get_gtex_exp}
+\alias{get_gtex_exp}
+\title{Get GTEx Expression Data for Specific Organ}
+\usage{
+get_gtex_exp(
+  organ_specific,
+  file_path,
+  probe_map_path,
+  pheno_path,
+  output_path
+)
+}
+\arguments{
+\item{organ_specific}{A character string specifying the organ to filter the gene expression data by.}
+
+\item{file_path}{A character string specifying the path to the GTEx gene expression data file.}
+
+\item{probe_map_path}{A character string specifying the path to the gtex_probeMap_gencode data file.}
+
+\item{pheno_path}{A character string specifying the path to the GTEx phenotype data file.}
+
+\item{output_path}{A character string specifying the path where the output RDS file will be saved.}
+}
+\value{
+A data frame containing gene expression data for the specified organ.
+        Rows represent genes, and columns represent samples. Note that this function also saves the
+        organ-specific GTEx data as an RDS file at the specified output path.
+}
+\description{
+This function retrieves gene expression data from the GTEx project that is specific to a certain organ.
+It performs various checks and processing steps to ensure that the data is consistent and relevant to the
+specified organ. The filtered and cleaned data is saved as an RDS file for further analysis.
+}
+\details{
+The function begins by checking if the gene expression and phenotype data files exist at
+         the specified paths. It then loads these data files and processes them by setting appropriate row names,
+         modifying column names for clarity, and filtering samples based on the specified organ. The function ensures
+         that only samples present in both datasets are retained for consistency. It also removes any duplicate gene
+         entries to prevent redundancy. Finally, the processed data is saved as an RDS file.
+}
+\note{
+The function will stop and throw an error if the input files do not exist, or if no samples are found
+      for the specified organ.
+
+CRITICAL: The 'output_path' parameter must end with '.rds' to be properly recognized by the function. It is also highly recommended
+      that the path includes specific identifiers related to the target samples. Please structure the 'output_path' following this pattern: './your_directory/your_sample_type.gtex.rds'.
+}