--- a +++ b/man/all_degs_venn.Rd @@ -0,0 +1,37 @@ +% Generated by roxygen2: do not edit by hand +% Please edit documentation in R/data.R +\docType{data} +\name{all_degs_venn} +\alias{all_degs_venn} +\title{All DEGs Venn Diagram Data} +\format{ +A list with the following components: +\describe{ + \item{DESeq2}{A vector of gene IDs or gene symbols identified as DEGs by the DESeq2 method.} + \item{edgeR}{A vector of gene IDs or gene symbols identified as DEGs by the edgeR method.} + \item{limma}{A vector of gene IDs or gene symbols identified as DEGs by the limma method. } + \item{Wilcoxon_test}{A vector of gene IDs or gene symbols identified as DEGs by the Wilcoxon test method. } +} +} +\source{ +The data was derived from differential expression analyses performed on a gene expression dataset using four commonly used statistical methods (DESeq2, edgeR, limma, and Wilcoxon test). +} +\usage{ +data(all_degs_venn) +} +\description{ +A dataset containing the differentially expressed genes (DEGs) from four different statistical analysis methods: DESeq2, edgeR, limma, and Wilcoxon test. +This dataset is used for generating Venn diagrams to compare the overlap of DEGs identified by different methods. +} +\examples{ +data(all_degs_venn) +# Example of plotting a Venn diagram using the dataset + +edge_colors <- c("#1b62bb","#13822e","#332c3a","#9e2d39") +name_color <- c("#1b64bb","#13828e","#337c3a","#9e9d39") +fill_colors <- c("#e3f2fa", "#0288d1") + +Contrast_degs_venn <- Contrast_Venn(all_degs_venn, edge_colors, name_color, fill_colors) + +} +\keyword{datasets}