# dependency package

usethis::use_package("stats")

usethis::use_package("utils")

usethis::use_package("DESeq2")

usethis::use_package("BiocGenerics")

usethis::use_package("ggplot2")

usethis::use_package("ggpubr")

usethis::use_package("tibble")

# license

usethis::use_mit_license("Dongyue Yu")

# readme

usethis::use_readme_md()

# adds a Code of Conduct

usethis::use_code_of_conduct(contact = "yudongyue@mail.nankai.edu.cn")

# vignette

usethis::use_vignette("a_example_workflow") # optional

devtools::install(build_vignettes = TRUE) # optional

## a website

# Run once to configure your package to use pkgdown

usethis::use_pkgdown() # optional

pkgdown::build_site() # optional

## add git

usethis::use_git()

usethis::use_github()

# CI

usethis::use_github_action_check_standard()

# CRAN

# Spell check

devtools::spell_check()

# Regular local tests

devtools::check()

# rhub cross-platform tests

rhub::check_for_cran()

# Windows platform-only test

devtools::check_win_devel() # optional

# rhub Windows platform-only test

rhub::check_for_cran(

  platform="windows-x86_64-devel",

  env_vars=c(R_COMPILE_AND_INSTALL_PACKAGES = "always")

) # optional

# Check before release

devtools::release()