# Generated by roxygen2: do not edit by hand

export("%>%")

export(Combat_Normal)

export(Contrast_Venn)

export(DESeq2_analyze)

export(Wilcoxon_analyze)

export(add_boxplot)

export(add_new_tile_layer)

export(adjust_alpha_scale)

export(adjust_color_tone)

export(adjust_export_pathway)

export(circos_fruits)

export(combat_tumor)

export(compare_merge)

export(create_base_plot)

export(deg_filter)

export(drawLegends)

export(edgeR_analyze)

export(enrich_circo_bar)

export(enrich_polar_bubble)

export(enrichment_circlize)

export(enrichment_spiral_plots)

export(extract_descriptions_counts)

export(extract_ntop_pathways)

export(extract_positive_pathways)

export(facet_density_foldchange)

export(filter_diff_genes)

export(four_degs_venn)

export(gather_graph_edge)

export(gather_graph_node)

export(gene_color)

export(gene_highlights)

export(gene_map_pathway)

export(get_gtex_exp)

export(get_tcga_exp)

export(highlight_by_node)

export(highlight_genes)

export(limma_analyze)

export(log_transform)

export(merge_density_foldchange)

export(merge_gtex_tcga)

export(merge_id_position)

export(merge_method_color)

export(new_ggraph)

export(pathway_count)

export(pathway_description)

export(prep_deseq2)

export(prep_edgeR)

export(prep_limma)

export(prep_wilcoxon)

export(process_heatdata)

export(seek_gtex_organ)

export(selectPathways)

export(spiral_newrle)

importFrom(ComplexHeatmap,Legend)

importFrom(ComplexHeatmap,draw)

importFrom(ComplexHeatmap,packLegend)

importFrom(DESeq2,DESeq)

importFrom(DESeq2,DESeqDataSetFromMatrix)

importFrom(DESeq2,results)

importFrom(Hmisc,capitalize)

importFrom(circlize,chordDiagram)

importFrom(dplyr,across)

importFrom(dplyr,all_of)

importFrom(dplyr,arrange)

importFrom(dplyr,bind_rows)

importFrom(dplyr,desc)

importFrom(dplyr,distinct)

importFrom(dplyr,filter)

importFrom(dplyr,group_by)

importFrom(dplyr,inner_join)

importFrom(dplyr,mutate)

importFrom(dplyr,n)

importFrom(dplyr,pull)

importFrom(dplyr,row_number)

importFrom(dplyr,select)

importFrom(dplyr,summarise)

importFrom(edgeR,DGEList)

importFrom(edgeR,calcNormFactors)

importFrom(edgeR,cpm)

importFrom(edgeR,estimateGLMCommonDisp)

importFrom(edgeR,estimateGLMTagwiseDisp)

importFrom(edgeR,estimateGLMTrendedDisp)

importFrom(edgeR,filterByExpr)

importFrom(edgeR,glmFit)

importFrom(edgeR,glmLRT)

importFrom(edgeR,topTags)

importFrom(geomtextpath,geom_textpath)

importFrom(ggVennDiagram,ggVennDiagram)

importFrom(ggalt,stat_xspline)

importFrom(ggdensity,geom_hdr)

importFrom(ggdensity,geom_hdr_rug)

importFrom(ggnewscale,new_scale)

importFrom(ggnewscale,new_scale_fill)

importFrom(ggplot2,aes)

importFrom(ggplot2,aes_string)

importFrom(ggplot2,alpha)

importFrom(ggplot2,annotate)

importFrom(ggplot2,coord_cartesian)

importFrom(ggplot2,coord_polar)

importFrom(ggplot2,element_blank)

importFrom(ggplot2,element_rect)

importFrom(ggplot2,expansion)

importFrom(ggplot2,facet_wrap)

importFrom(ggplot2,geom_bar)

importFrom(ggplot2,geom_hline)

importFrom(ggplot2,geom_point)

importFrom(ggplot2,geom_segment)

importFrom(ggplot2,geom_smooth)

importFrom(ggplot2,geom_text)

importFrom(ggplot2,ggplot)

importFrom(ggplot2,guide_legend)

importFrom(ggplot2,labs)

importFrom(ggplot2,margin)

importFrom(ggplot2,scale_alpha_continuous)

importFrom(ggplot2,scale_color_brewer)

importFrom(ggplot2,scale_color_manual)

importFrom(ggplot2,scale_fill_gradient)

importFrom(ggplot2,scale_fill_identity)

importFrom(ggplot2,scale_fill_manual)

importFrom(ggplot2,scale_size)

importFrom(ggplot2,scale_x_continuous)

importFrom(ggplot2,scale_y_continuous)

importFrom(ggplot2,theme)

importFrom(ggplot2,theme_minimal)

importFrom(ggplot2,theme_void)

importFrom(ggplot2,unit)

importFrom(ggpubr,stat_cor)

importFrom(ggraph,geom_edge_diagonal)

importFrom(ggraph,geom_node_point)

importFrom(ggraph,geom_node_text)

importFrom(ggraph,ggraph)

importFrom(ggraph,node_angle)

importFrom(ggraph,scale_edge_colour_brewer)

importFrom(ggtree,aes)

importFrom(ggtree,geom_hilight)

importFrom(ggtree,geom_point2)

importFrom(grDevices,col2rgb)

importFrom(grDevices,convertColor)

importFrom(grDevices,rgb)

importFrom(graphics,strwidth)

importFrom(grid,gpar)

importFrom(grid,grid.roundrect)

importFrom(grid,grid.text)

importFrom(grid,pushViewport)

importFrom(grid,unit)

importFrom(grid,upViewport)

importFrom(grid,viewport)

importFrom(hrbrthemes,theme_ipsum)

importFrom(limma,contrasts.fit)

importFrom(limma,eBayes)

importFrom(limma,lmFit)

importFrom(limma,topTable)

importFrom(magrittr,"%>%")

importFrom(rlang,.data)

importFrom(rlang,sym)

importFrom(spiralize,spiral_initialize)

importFrom(spiralize,spiral_rect)

importFrom(spiralize,spiral_text)

importFrom(spiralize,spiral_track)

importFrom(stats,as.formula)

importFrom(stats,model.matrix)

importFrom(stats,na.omit)

importFrom(stats,p.adjust)

importFrom(stats,quantile)

importFrom(stats,wilcox.test)

importFrom(stringr,str_c)

importFrom(sva,ComBat_seq)

importFrom(tibble,as_tibble)

importFrom(tibble,column_to_rownames)

importFrom(tibble,tibble)

importFrom(tidygraph,tbl_graph)

importFrom(tidyr,unite)

importFrom(utils,head)

importFrom(utils,read.table)

importFrom(utils,tail)