--- a +++ b/setup.py @@ -0,0 +1,30 @@ +from setuptools import Command, find_packages, setup + +__lib_name__ = "SpatialGlue" +__lib_version__ = "1.1.5" +__description__ = "Deciphering spatial domains from spatial multi-omics with SpatialGlue" +__url__ = "https://github.com/JinmiaoChenLab/SpatialGlue" +__author__ = "Yahui Long" +__author_email__ = "longyh@immunol.a-star.edu.sg" +__license__ = "MIT" +__keywords__ = ["Spatial multi-omics", "Cross-omics integration", "Deep learning", "Graph neural networks", "Dual attention"] +__requires__ = ["requests",] + +with open("README.rst", "r", encoding="utf-8") as f: + __long_description__ = f.read() + +setup( + name = __lib_name__, + version = __lib_version__, + description = __description__, + url = __url__, + author = __author__, + author_email = __author_email__, + license = __license__, + packages = ["SpatialGlue"], + install_requires = __requires__, + zip_safe = False, + include_package_data = True, + long_description = """Integration of multiple data modalities in a spatially informed manner remains an unmet need for exploiting spatial multi-omics data. Here, we introduce SpatialGlue, a novel graph neural network with dual-attention mechanism, to decipher spatial domains by intra-omics integration of spatial location and omics measurement followed by cross-omics integration. We demonstrate that SpatialGlue can more accurately resolve spatial domains at a higher resolution across different tissue types and technology platforms, to enable biological insights into cross-modality spatial correlations. SpatialGlue is computation resource efficient and can be applied for data from various spatial multi-omics technological platforms, including Spatial-epigenome-transcriptome, Stereo-CITE-seq, SPOTS, and 10x Visium. Next, we will extend SpatialGlue to more platforms, such as 10x Genomics Xenium and Nanostring CosMx. """, + long_description_content_type="text/markdown" +)