SingleCellMultiOmics / Git / Commit [2c420a]

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SingleCellMultiOmics

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Commit [2c420a]

Initial commit

Authored by: AlyssaS 2025-04-19

Browse code at this revision

Parent: [bb937b]

Child: [fedac4]

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added	singlecellmultiomics/modularDemultiplexer/indices/illumina_TruSeq_indices.bc
added	singlecellmultiomics/modularDemultiplexer/indices/illumina_i7_indices.bc
added	singlecellmultiomics/modularDemultiplexer/indices/illumina_merged_ThruPlex48S_RP.bc
added	singlecellmultiomics/modularDemultiplexer/indices/illumina_merged_iPCR_RP.bc
added	singlecellmultiomics/molecule/__init__.py
added	singlecellmultiomics/molecule/chic.py
added	singlecellmultiomics/molecule/consensus.py
added	singlecellmultiomics/molecule/consensus_model/nla_140bp_pe_juan_1M.pickle
added	singlecellmultiomics/molecule/consensus_model/sk_NR3_mf3_trained_hard_fit_9939.h5
added	singlecellmultiomics/molecule/featureannotatedmolecule.py
added	singlecellmultiomics/molecule/filter.py
added	singlecellmultiomics/molecule/fourthiouridine.py
added	singlecellmultiomics/molecule/iterator.py
added	singlecellmultiomics/molecule/molecule.py
added	singlecellmultiomics/molecule/nlaIII.py
added	singlecellmultiomics/molecule/rna.py
added	singlecellmultiomics/molecule/scartrace.py
added	singlecellmultiomics/molecule/taps.py
added	singlecellmultiomics/pyutils/__init__.py
added	singlecellmultiomics/pyutils/handlelimiter.py
added	singlecellmultiomics/pyutils/pyutils.py
added	singlecellmultiomics/snakemake_workflows/_general/sge_wrapper.py
added	singlecellmultiomics/snakemake_workflows/_general/slurm_wrapper.py
added	singlecellmultiomics/snakemake_workflows/call_sc_variants/Snakefile
added	singlecellmultiomics/snakemake_workflows/call_sc_variants/config.json

singlecellmultiomics/modularDemultiplexer/indices/illumina_TruSeq_indices.bc Diff Switch to side-by-side view

singlecellmultiomics/modularDemultiplexer/indices/illumina_i7_indices.bc Diff Switch to side-by-side view

singlecellmultiomics/modularDemultiplexer/indices/illumina_merged_ThruPlex48S_RP.bc Diff Switch to side-by-side view

singlecellmultiomics/modularDemultiplexer/indices/illumina_merged_iPCR_RP.bc Diff Switch to side-by-side view

singlecellmultiomics/molecule/init.py Diff Switch to side-by-side view

singlecellmultiomics/molecule/chic.py Diff Switch to side-by-side view

singlecellmultiomics/molecule/consensus.py Diff Switch to side-by-side view

singlecellmultiomics/molecule/consensus_model/nla_140bp_pe_juan_1M.pickle

Binary file was added.

singlecellmultiomics/molecule/consensus_model/sk_NR3_mf3_trained_hard_fit_9939.h5

Binary file was added.

singlecellmultiomics/molecule/featureannotatedmolecule.py Diff Switch to side-by-side view

singlecellmultiomics/molecule/filter.py Diff Switch to side-by-side view

singlecellmultiomics/molecule/fourthiouridine.py Diff Switch to side-by-side view

singlecellmultiomics/molecule/iterator.py Diff Switch to side-by-side view

singlecellmultiomics/molecule/molecule.py Diff Switch to side-by-side view

singlecellmultiomics/molecule/nlaIII.py Diff Switch to side-by-side view

singlecellmultiomics/molecule/rna.py Diff Switch to side-by-side view

singlecellmultiomics/molecule/scartrace.py Diff Switch to side-by-side view

singlecellmultiomics/molecule/taps.py Diff Switch to side-by-side view

singlecellmultiomics/pyutils/init.py Diff Switch to side-by-side view

singlecellmultiomics/pyutils/handlelimiter.py Diff Switch to side-by-side view

singlecellmultiomics/pyutils/pyutils.py Diff Switch to side-by-side view

singlecellmultiomics/snakemake_workflows/_general/sge_wrapper.py Diff Switch to side-by-side view

singlecellmultiomics/snakemake_workflows/_general/slurm_wrapper.py Diff Switch to side-by-side view

singlecellmultiomics/snakemake_workflows/call_sc_variants/Snakefile Diff Switch to side-by-side view

singlecellmultiomics/snakemake_workflows/call_sc_variants/config.json Diff Switch to side-by-side view

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