SingleCellMultiOmics / Git / Commit [2c420a]

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SingleCellMultiOmics

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Commit [2c420a]

Initial commit

Authored by: AlyssaS 2025-04-19

Browse code at this revision

Parent: [bb937b]

Child: [fedac4]

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added	singlecellmultiomics/libraryDetection/sequencingLibraryListing.py
added	singlecellmultiomics/libraryProcessing/__init__.py
added	singlecellmultiomics/libraryProcessing/libraryStatistics.py
added	singlecellmultiomics/libraryProcessing/sample_sheet.py
added	singlecellmultiomics/libraryProcessing/scsortchicfeaturedensitytable.py
added	singlecellmultiomics/libraryProcessing/scsortchicqc.py
added	singlecellmultiomics/libraryProcessing/scsortchicstats.py
added	singlecellmultiomics/methylation/__init__.py
added	singlecellmultiomics/methylation/bam_to_methylation_bw.py
added	singlecellmultiomics/methylation/methylation.py
added	singlecellmultiomics/methylation/methylationtab_to_bed.py
added	singlecellmultiomics/modularDemultiplexer/__init__.py
added	singlecellmultiomics/modularDemultiplexer/barcodes/10x_3M-february-2018.bc.gz
added	singlecellmultiomics/modularDemultiplexer/barcodes/CS2_scattered.bc
added	singlecellmultiomics/modularDemultiplexer/barcodes/CS2_scattered_8bp.bc
added	singlecellmultiomics/modularDemultiplexer/barcodes/DamID2.bc
added	singlecellmultiomics/modularDemultiplexer/barcodes/DamID2_384_CelSeq2.barcodes.tsv
added	singlecellmultiomics/modularDemultiplexer/barcodes/DamID2_8bp.bc
added	singlecellmultiomics/modularDemultiplexer/barcodes/DamID2_scattered.bc
added	singlecellmultiomics/modularDemultiplexer/barcodes/DamID2_scattered_8bp.bc
added	singlecellmultiomics/modularDemultiplexer/barcodes/celseq1.bc
added	singlecellmultiomics/modularDemultiplexer/barcodes/celseq2.bc
added	singlecellmultiomics/modularDemultiplexer/barcodes/celseq2_noNla.bc
added	singlecellmultiomics/modularDemultiplexer/barcodes/illumina_RP_indices.bc
added	singlecellmultiomics/modularDemultiplexer/barcodes/lennart96NLA.bc

singlecellmultiomics/libraryDetection/sequencingLibraryListing.py Diff Switch to side-by-side view

singlecellmultiomics/libraryProcessing/init.py Diff Switch to side-by-side view

singlecellmultiomics/libraryProcessing/libraryStatistics.py Diff Switch to side-by-side view

singlecellmultiomics/libraryProcessing/sample_sheet.py Diff Switch to side-by-side view

singlecellmultiomics/libraryProcessing/scsortchicfeaturedensitytable.py Diff Switch to side-by-side view

singlecellmultiomics/libraryProcessing/scsortchicqc.py Diff Switch to side-by-side view

singlecellmultiomics/libraryProcessing/scsortchicstats.py Diff Switch to side-by-side view

singlecellmultiomics/methylation/init.py Diff Switch to side-by-side view

singlecellmultiomics/methylation/bam_to_methylation_bw.py Diff Switch to side-by-side view

singlecellmultiomics/methylation/methylation.py Diff Switch to side-by-side view

singlecellmultiomics/methylation/methylationtab_to_bed.py Diff Switch to side-by-side view

singlecellmultiomics/modularDemultiplexer/init.py Diff Switch to side-by-side view

singlecellmultiomics/modularDemultiplexer/barcodes/10x_3M-february-2018.bc.gz

Binary file was added.

singlecellmultiomics/modularDemultiplexer/barcodes/CS2_scattered.bc Diff Switch to side-by-side view

singlecellmultiomics/modularDemultiplexer/barcodes/CS2_scattered_8bp.bc Diff Switch to side-by-side view

singlecellmultiomics/modularDemultiplexer/barcodes/DamID2.bc Diff Switch to side-by-side view

singlecellmultiomics/modularDemultiplexer/barcodes/DamID2_384_CelSeq2.barcodes.tsv Diff Switch to side-by-side view

singlecellmultiomics/modularDemultiplexer/barcodes/DamID2_8bp.bc Diff Switch to side-by-side view

singlecellmultiomics/modularDemultiplexer/barcodes/DamID2_scattered.bc Diff Switch to side-by-side view

singlecellmultiomics/modularDemultiplexer/barcodes/DamID2_scattered_8bp.bc Diff Switch to side-by-side view

singlecellmultiomics/modularDemultiplexer/barcodes/celseq1.bc Diff Switch to side-by-side view

singlecellmultiomics/modularDemultiplexer/barcodes/celseq2.bc Diff Switch to side-by-side view

singlecellmultiomics/modularDemultiplexer/barcodes/celseq2_noNla.bc Diff Switch to side-by-side view

singlecellmultiomics/modularDemultiplexer/barcodes/illumina_RP_indices.bc Diff Switch to side-by-side view

singlecellmultiomics/modularDemultiplexer/barcodes/lennart96NLA.bc Diff Switch to side-by-side view

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