from singlecellmultiomics.modularDemultiplexer.baseDemultiplexMethods import UmiBarcodeDemuxMethod

# Cell seq 1 with 6bp UMI

class CELSeq1_c8_u4(UmiBarcodeDemuxMethod):

    def __init__(self, barcodeFileParser, **kwargs):

        self.barcodeFileAlias = 'celseq1'

        UmiBarcodeDemuxMethod.__init__(

            self,

            umiRead=0,

            umiStart=8,

            umiLength=4,

            barcodeRead=0,

            barcodeStart=0,

            barcodeLength=8,

            random_primer_read=1,

            random_primer_length=6,

            barcodeFileAlias=self.barcodeFileAlias,

            barcodeFileParser=barcodeFileParser,

            **kwargs)

        self.shortName = 'CS1C8U4'

        self.longName = 'CELSeq 1, CB: 8bp, UMI: 4bp'

        self.autoDetectable = True

        self.description = 'R1 starts with a 8bp cell barcode followed by a 4bp UMI. R2 ends with a 6bp random primer'