--- a +++ b/env.yml @@ -0,0 +1,112 @@ +name: scmultiomics +channels: + - bioconda + - conda-forge + - anaconda + - defaults +dependencies: + - appnope=0.1.0=py37_0 + - attrs=19.1.0=py37_1 + - backcall=0.1.0=py37_0 + - bleach=3.1.0=py37_0 + - bzip2=1.0.8=h01d97ff_0 + - ca-certificates=2019.5.15=1 + - certifi=2019.6.16=py37_1 + - colorama=0.4.1=py_0 + - curl=7.65.3=h22ea746_0 + - cycler=0.10.0=py_1 + - dbus=1.13.6=h90a0687_0 + - decorator=4.4.0=py37_1 + - defusedxml=0.6.0=py_0 + - entrypoints=0.3=py37_0 + - expat=2.2.6=h0a44026_0 + - freetype=2.10.0=h24853df_1 + - gettext=0.19.8.1=h15daf44_3 + - glib=2.56.2=hd9629dc_0 + - htslib=1.9=h3a161e8_7 + - icu=58.2=h4b95b61_1 + - ipykernel=5.1.2=py37h39e3cac_0 + - ipython=7.7.0=py37h39e3cac_0 + - ipython_genutils=0.2.0=py37_0 + - ipywidgets=7.5.1=py_0 + - jedi=0.15.1=py37_0 + - jinja2=2.10.1=py37_0 + - jpeg=9b=he5867d9_2 + - jsonschema=3.0.2=py37_0 + - jupyter=1.0.0=py37_7 + - jupyter_client=5.3.1=py_0 + - jupyter_console=6.0.0=py37_0 + - jupyter_core=4.5.0=py_0 + - kiwisolver=1.1.0=py37h770b8ee_0 + - krb5=1.16.3=hcfa6398_1001 + - libblas=3.8.0=12_openblas + - libcblas=3.8.0=12_openblas + - libcurl=7.65.3=h16faf7d_0 + - libcxx=8.0.1=0 + - libcxxabi=8.0.1=0 + - libdeflate=1.0=h1de35cc_1 + - libedit=3.1.20181209=hb402a30_0 + - libffi=3.2.1=1 + - libgfortran=4.0.0=2 + - libiconv=1.15=hdd342a3_7 + - liblapack=3.8.0=12_openblas + - libopenblas=0.3.7=h4bb4525_1 + - libpng=1.6.37=h2573ce8_0 + - libsodium=1.0.16=h3efe00b_0 + - libssh2=1.8.2=hcdc9a53_2 + - llvm-openmp=8.0.1=h770b8ee_0 + - markupsafe=1.1.1=py37h1de35cc_0 + - matplotlib=3.1.1=py37_1 + - matplotlib-base=3.1.1=py37h3a684a6_1 + - mistune=0.8.4=py37h1de35cc_0 + - nbconvert=5.5.0=py_0 + - nbformat=4.4.0=py37_0 + - ncurses=6.1=h0a44026_1002 + - notebook=6.0.0=py37_0 + - numpy=1.17.0=py37h6b0580a_0 + - openssl=1.1.1=h1de35cc_0 + - pandas=0.25.0=py37h86efe34_0 + - pandoc=2.2.3.2=0 + - pandocfilters=1.4.2=py37_1 + - parso=0.5.1=py_0 + - pcre=8.43=h0a44026_0 + - pexpect=4.7.0=py37_0 + - pickleshare=0.7.5=py37_0 + - pip=19.2.2=py37_0 + - prometheus_client=0.7.1=py_0 + - prompt_toolkit=2.0.9=py37_0 + - ptyprocess=0.6.0=py37_0 + - pygments=2.4.2=py_0 + - pyparsing=2.4.2=py_0 + - pyqt=5.9.2=py37h655552a_0 + - pyrsistent=0.14.11=py37h1de35cc_0 + - pysam=0.15.3=py37h726f235_1 + - python=3.7.3=h93065d6_1 + - python-dateutil=2.8.0=py_0 + - pytz=2019.2=py_0 + - pyzmq=18.1.0=py37h0a44026_0 + - qt=5.9.7=h468cd18_1 + - qtconsole=4.5.3=py_0 + - readline=8.0=hcfe32e1_0 + - samtools=1.9=h8aa4d43_12 + - send2trash=1.5.0=py37_0 + - setuptools=41.2.0=py37_0 + - sip=4.19.13=py37h0a44026_0 + - six=1.12.0=py37_1000 + - sqlite=3.29.0=hb7d70f7_0 + - terminado=0.8.2=py37_0 + - testpath=0.4.2=py37_0 + - tk=8.6.9=h2573ce8_1002 + - tornado=6.0.3=py37h01d97ff_0 + - traitlets=4.3.2=py37_0 + - wcwidth=0.1.7=py37_0 + - webencodings=0.5.1=py37_1 + - wheel=0.33.6=py37_0 + - widgetsnbextension=3.5.1=py37_0 + - xz=5.2.4=h1de35cc_1001 + - zeromq=4.3.1=h0a44026_3 + - zlib=1.2.11=h01d97ff_1005 + - pip: + - more-itertools==7.2.0 + - pysamiterators==1.5 + - tabulate==0.8.3