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+singlecellmultiomics.bamProcessing package
+==========================================
+
+Submodules
+----------
+
+singlecellmultiomics.bamProcessing.alignment\_view module
+---------------------------------------------------------
+
+.. automodule:: singlecellmultiomics.bamProcessing.alignment_view
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
+singlecellmultiomics.bamProcessing.bamDuprate module
+----------------------------------------------------
+
+.. automodule:: singlecellmultiomics.bamProcessing.bamDuprate
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
+singlecellmultiomics.bamProcessing.bamExtractRandomPrimerStats module
+---------------------------------------------------------------------
+
+.. automodule:: singlecellmultiomics.bamProcessing.bamExtractRandomPrimerStats
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
+singlecellmultiomics.bamProcessing.bamFeatureDensityVisualisation module
+------------------------------------------------------------------------
+
+.. automodule:: singlecellmultiomics.bamProcessing.bamFeatureDensityVisualisation
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
+singlecellmultiomics.bamProcessing.bamFilter module
+---------------------------------------------------
+
+.. automodule:: singlecellmultiomics.bamProcessing.bamFilter
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
+singlecellmultiomics.bamProcessing.bamFunctions module
+------------------------------------------------------
+
+.. automodule:: singlecellmultiomics.bamProcessing.bamFunctions
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
+singlecellmultiomics.bamProcessing.bamMappingRate module
+--------------------------------------------------------
+
+.. automodule:: singlecellmultiomics.bamProcessing.bamMappingRate
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
+singlecellmultiomics.bamProcessing.bamPlateVisualisation module
+---------------------------------------------------------------
+
+.. automodule:: singlecellmultiomics.bamProcessing.bamPlateVisualisation
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
+singlecellmultiomics.bamProcessing.bamPlotRTstats module
+--------------------------------------------------------
+
+.. automodule:: singlecellmultiomics.bamProcessing.bamPlotRTstats
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
+singlecellmultiomics.bamProcessing.bamTabulator module
+------------------------------------------------------
+
+.. automodule:: singlecellmultiomics.bamProcessing.bamTabulator
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
+singlecellmultiomics.bamProcessing.bamToCountTable module
+---------------------------------------------------------
+
+.. automodule:: singlecellmultiomics.bamProcessing.bamToCountTable
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
+singlecellmultiomics.bamProcessing.bamToMethylationAndCopyNumber module
+-----------------------------------------------------------------------
+
+.. automodule:: singlecellmultiomics.bamProcessing.bamToMethylationAndCopyNumber
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
+singlecellmultiomics.bamProcessing.bamToRNACounts module
+--------------------------------------------------------
+
+.. automodule:: singlecellmultiomics.bamProcessing.bamToRNACounts
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
+singlecellmultiomics.bamProcessing.structureTensor module
+---------------------------------------------------------
+
+.. automodule:: singlecellmultiomics.bamProcessing.structureTensor
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
+singlecellmultiomics.bamProcessing.variantStats module
+------------------------------------------------------
+
+.. automodule:: singlecellmultiomics.bamProcessing.variantStats
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
+
+Module contents
+---------------
+
+.. automodule:: singlecellmultiomics.bamProcessing
+   :members:
+   :undoc-members:
+   :show-inheritance: