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Commit [090c8c] main

Initial commit

Authored by: AlyssaS 2025-04-19

Browse code at this revision

Parent: [554d78]

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added	.DS_Store
added	.ipynb_checkpoints/README-checkpoint.md
added	.ipynb_checkpoints/SNAREseq_SCOT_alignment-checkpoint.ipynb
added	.ipynb_checkpoints/SNAREseq_newSCOT-checkpoint.ipynb
added	.ipynb_checkpoints/SNAREseq_replicate-checkpoint.ipynb
added	.ipynb_checkpoints/scGEM_SCOT_alignment-checkpoint.ipynb
added	.ipynb_checkpoints/unbalanced_GW-checkpoint.ipynb
added	.ipynb_checkpoints/unbalanced_GW_SNAREseq-checkpoint.ipynb
added	LICENSE
added	README.md
added	assets/.DS_Store
added	assets/SCOT_logo.png
added	data/.DS_Store
added	data/README_data.txt
added	data/SNARE/SNAREseq_atac_feat.npy
added	data/SNARE/SNAREseq_atac_types.txt
added	data/SNARE/SNAREseq_metadata.txt
added	data/SNARE/SNAREseq_rna_feat.npy
added	data/SNARE/SNAREseq_rna_types.txt
added	data/scGEM/.DS_Store
added	data/scGEM/scGEM_expression.csv
added	data/scGEM/scGEM_typeExpression.txt
added	data/scGEM/scGEM_typeMethylation.txt
added	data/simulations/s1_label1.txt
added	data/simulations/s1_label2.txt

.DS_Store

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.ipynb_checkpoints/README-checkpoint.md Diff Switch to side-by-side view

.ipynb_checkpoints/SNAREseq_SCOT_alignment-checkpoint.ipynb Diff Switch to side-by-side view

.ipynb_checkpoints/SNAREseq_newSCOT-checkpoint.ipynb Diff Switch to side-by-side view

.ipynb_checkpoints/SNAREseq_replicate-checkpoint.ipynb Diff Switch to side-by-side view

.ipynb_checkpoints/scGEM_SCOT_alignment-checkpoint.ipynb Diff Switch to side-by-side view

.ipynb_checkpoints/unbalanced_GW-checkpoint.ipynb Diff Switch to side-by-side view

.ipynb_checkpoints/unbalanced_GW_SNAREseq-checkpoint.ipynb Diff Switch to side-by-side view

LICENSE Diff Switch to side-by-side view

README.md Diff Switch to side-by-side view

assets/.DS_Store

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assets/SCOT_logo.png

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data/.DS_Store

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data/README_data.txt Diff Switch to side-by-side view

data/SNARE/SNAREseq_atac_feat.npy

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data/SNARE/SNAREseq_atac_types.txt Diff Switch to side-by-side view

data/SNARE/SNAREseq_metadata.txt Diff Switch to side-by-side view

data/SNARE/SNAREseq_rna_feat.npy

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data/SNARE/SNAREseq_rna_types.txt Diff Switch to side-by-side view

data/scGEM/.DS_Store

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data/scGEM/scGEM_expression.csv Diff Switch to side-by-side view

data/scGEM/scGEM_typeExpression.txt Diff Switch to side-by-side view

data/scGEM/scGEM_typeMethylation.txt Diff Switch to side-by-side view

data/simulations/s1_label1.txt Diff Switch to side-by-side view

data/simulations/s1_label2.txt Diff Switch to side-by-side view

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