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Models:
Alyssa Salazar
AlyssaS/
SALMON
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[a23a6e]: / data / BRCA_583_new / TMB.csv

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# All_Somatic_Mutations All_Irregular_Protein_Changes Nonsynonymous_Somatic_Mutations Nonsynonymous_Irregular_Protein_Changes All_TMB All_pTNB NonSyn_TMB NonSyn_pTNB
1 TCGA-A1-A0SB 19 11 16 11 0.5 0.289473684210526 0.421052631578947 0.289473684210526
2 TCGA-A1-A0SD 27 18 24 18 0.710526315789474 0.473684210526316 0.631578947368421 0.473684210526316
3 TCGA-A1-A0SF 38 23 32 23 1 0.605263157894737 0.842105263157895 0.605263157894737
4 TCGA-A1-A0SG 31 19 26 19 0.815789473684211 0.5 0.684210526315789 0.5
5 TCGA-A1-A0SI 185 103 136 103 4.86842105263158 2.71052631578947 3.57894736842105 2.71052631578947
6 TCGA-A1-A0SN 49 32 38 32 1.28947368421053 0.842105263157895 1 0.842105263157895
7 TCGA-A1-A0SQ 26 16 19 16 0.684210526315789 0.421052631578947 0.5 0.421052631578947
8 TCGA-A2-A04N 41 27 32 27 1.07894736842105 0.710526315789474 0.842105263157895 0.710526315789474
9 TCGA-A2-A04U 55 33 46 33 1.44736842105263 0.868421052631579 1.21052631578947 0.868421052631579
10 TCGA-A2-A04W 105 61 81 61 2.76315789473684 1.60526315789474 2.13157894736842 1.60526315789474
11 TCGA-A2-A0CK 22 9 12 9 0.578947368421053 0.236842105263158 0.315789473684211 0.236842105263158
12 TCGA-A2-A0CL 20 13 16 13 0.526315789473684 0.342105263157895 0.421052631578947 0.342105263157895
13 TCGA-A2-A0CO 28 16 18 16 0.736842105263158 0.421052631578947 0.473684210526316 0.421052631578947
14 TCGA-A2-A0CR 109 73 91 73 2.86842105263158 1.92105263157895 2.39473684210526 1.92105263157895
15 TCGA-A2-A0CS 33 19 26 19 0.868421052631579 0.5 0.684210526315789 0.5
16 TCGA-A2-A0CV 22 13 19 13 0.578947368421053 0.342105263157895 0.5 0.342105263157895
17 TCGA-A2-A0CW 58 37 49 37 1.52631578947368 0.973684210526316 1.28947368421053 0.973684210526316
18 TCGA-A2-A0D3 26 15 19 15 0.684210526315789 0.394736842105263 0.5 0.394736842105263
19 TCGA-A2-A0ES 4 2 3 2 0.105263157894737 0.0526315789473684 0.0789473684210526 0.0526315789473684
20 TCGA-A2-A0EW 13 7 10 7 0.342105263157895 0.184210526315789 0.263157894736842 0.184210526315789
21 TCGA-A2-A0T3 31 19 21 19 0.815789473684211 0.5 0.552631578947368 0.5
22 TCGA-A2-A1FV 39 27 32 27 1.02631578947368 0.710526315789474 0.842105263157895 0.710526315789474
23 TCGA-A2-A1FW 66 30 42 30 1.73684210526316 0.789473684210526 1.10526315789474 0.789473684210526
24 TCGA-A2-A1FX 19 14 16 14 0.5 0.368421052631579 0.421052631578947 0.368421052631579
25 TCGA-A2-A1FZ 30 17 24 17 0.789473684210526 0.447368421052632 0.631578947368421 0.447368421052632
26 TCGA-A2-A1G0 21 15 19 15 0.552631578947368 0.394736842105263 0.5 0.394736842105263
27 TCGA-A2-A1G1 31 14 22 14 0.815789473684211 0.368421052631579 0.578947368421053 0.368421052631579
28 TCGA-A2-A1G4 36 18 26 18 0.947368421052632 0.473684210526316 0.684210526315789 0.473684210526316
29 TCGA-A2-A1G6 4 4 4 4 0.105263157894737 0.105263157894737 0.105263157894737 0.105263157894737
30 TCGA-A2-A259 14 10 11 10 0.368421052631579 0.263157894736842 0.289473684210526 0.263157894736842
31 TCGA-A2-A25A 96 63 78 63 2.52631578947368 1.65789473684211 2.05263157894737 1.65789473684211
32 TCGA-A2-A25B 81 47 59 47 2.13157894736842 1.23684210526316 1.55263157894737 1.23684210526316
33 TCGA-A2-A25C 23 12 19 12 0.605263157894737 0.315789473684211 0.5 0.315789473684211
34 TCGA-A2-A25D 55 31 40 31 1.44736842105263 0.815789473684211 1.05263157894737 0.815789473684211
35 TCGA-A2-A25E 56 38 48 38 1.47368421052632 1 1.26315789473684 1
36 TCGA-A2-A25F 6 3 3 3 0.157894736842105 0.0789473684210526 0.0789473684210526 0.0789473684210526
37 TCGA-A2-A3KC 28 18 24 18 0.736842105263158 0.473684210526316 0.631578947368421 0.473684210526316
38 TCGA-A2-A3KD 10 2 5 2 0.263157894736842 0.0526315789473684 0.131578947368421 0.0526315789473684
39 TCGA-A2-A3XS 24 12 19 12 0.631578947368421 0.315789473684211 0.5 0.315789473684211
40 TCGA-A2-A3XT 79 50 64 50 2.07894736842105 1.31578947368421 1.68421052631579 1.31578947368421
41 TCGA-A2-A3XU 22 12 17 12 0.578947368421053 0.315789473684211 0.447368421052632 0.315789473684211
42 TCGA-A2-A3XV 44 26 38 26 1.15789473684211 0.684210526315789 1 0.684210526315789
43 TCGA-A2-A3XW 6 2 3 2 0.157894736842105 0.0526315789473684 0.0789473684210526 0.0526315789473684
44 TCGA-A2-A3XX 35 16 30 16 0.921052631578947 0.421052631578947 0.789473684210526 0.421052631578947
45 TCGA-A2-A3XY 46 27 35 27 1.21052631578947 0.710526315789474 0.921052631578947 0.710526315789474
46 TCGA-A2-A3XZ 43 25 34 25 1.13157894736842 0.657894736842105 0.894736842105263 0.657894736842105
47 TCGA-A2-A3Y0 170 99 133 99 4.47368421052632 2.60526315789474 3.5 2.60526315789474
48 TCGA-A2-A4RW 108 67 86 67 2.84210526315789 1.76315789473684 2.26315789473684 1.76315789473684
49 TCGA-A2-A4RX 20 10 12 10 0.526315789473684 0.263157894736842 0.315789473684211 0.263157894736842
50 TCGA-A2-A4RY 14 7 10 7 0.368421052631579 0.184210526315789 0.263157894736842 0.184210526315789
51 TCGA-A2-A4S0 10 4 6 4 0.263157894736842 0.105263157894737 0.157894736842105 0.105263157894737
52 TCGA-A2-A4S1 65 45 59 45 1.71052631578947 1.18421052631579 1.55263157894737 1.18421052631579
53 TCGA-A2-A4S2 39 22 30 22 1.02631578947368 0.578947368421053 0.789473684210526 0.578947368421053
54 TCGA-A2-A4S3 72 37 50 37 1.89473684210526 0.973684210526316 1.31578947368421 0.973684210526316
55 TCGA-A7-A0DA 122 69 105 69 3.21052631578947 1.81578947368421 2.76315789473684 1.81578947368421
56 TCGA-A7-A0DB 87 47 66 47 2.28947368421053 1.23684210526316 1.73684210526316 1.23684210526316
57 TCGA-A7-A13D 189 99 150 99 4.97368421052632 2.60526315789474 3.94736842105263 2.60526315789474
58 TCGA-A7-A13E 212 114 157 114 5.57894736842105 3 4.13157894736842 3
59 TCGA-A7-A13F 34 20 30 20 0.894736842105263 0.526315789473684 0.789473684210526 0.526315789473684
60 TCGA-A7-A13G 26 14 16 14 0.684210526315789 0.368421052631579 0.421052631578947 0.368421052631579
61 TCGA-A7-A13H 23 16 20 16 0.605263157894737 0.421052631578947 0.526315789473684 0.421052631578947
62 TCGA-A7-A26F 93 65 78 65 2.44736842105263 1.71052631578947 2.05263157894737 1.71052631578947
63 TCGA-A7-A26G 48 22 33 22 1.26315789473684 0.578947368421053 0.868421052631579 0.578947368421053
64 TCGA-A7-A26H 99 56 74 56 2.60526315789474 1.47368421052632 1.94736842105263 1.47368421052632
65 TCGA-A7-A26I 32 20 28 20 0.842105263157895 0.526315789473684 0.736842105263158 0.526315789473684
66 TCGA-A7-A2KD 36 25 28 25 0.947368421052632 0.657894736842105 0.736842105263158 0.657894736842105
67 TCGA-A7-A3IY 16 8 11 8 0.421052631578947 0.210526315789474 0.289473684210526 0.210526315789474
68 TCGA-A7-A3IZ 90 52 61 52 2.36842105263158 1.36842105263158 1.60526315789474 1.36842105263158
69 TCGA-A7-A3J0 40 16 25 16 1.05263157894737 0.421052631578947 0.657894736842105 0.421052631578947
70 TCGA-A7-A3J1 23 15 17 15 0.605263157894737 0.394736842105263 0.447368421052632 0.394736842105263
71 TCGA-A7-A3RF 62 30 46 30 1.63157894736842 0.789473684210526 1.21052631578947 0.789473684210526
72 TCGA-A7-A425 38 18 33 18 1 0.473684210526316 0.868421052631579 0.473684210526316
73 TCGA-A7-A426 35 22 27 22 0.921052631578947 0.578947368421053 0.710526315789474 0.578947368421053
74 TCGA-A7-A4SA 68 36 47 36 1.78947368421053 0.947368421052632 1.23684210526316 0.947368421052632
75 TCGA-A7-A4SB 35 23 31 23 0.921052631578947 0.605263157894737 0.815789473684211 0.605263157894737
76 TCGA-A7-A4SD 49 26 39 26 1.28947368421053 0.684210526315789 1.02631578947368 0.684210526315789
77 TCGA-A7-A4SE 93 46 77 46 2.44736842105263 1.21052631578947 2.02631578947368 1.21052631578947
78 TCGA-A7-A4SF 71 40 50 40 1.86842105263158 1.05263157894737 1.31578947368421 1.05263157894737
79 TCGA-A7-A56D 131 75 90 75 3.44736842105263 1.97368421052632 2.36842105263158 1.97368421052632
80 TCGA-A7-A5ZV 178 100 138 100 4.68421052631579 2.63157894736842 3.63157894736842 2.63157894736842
81 TCGA-A7-A5ZW 27 12 20 12 0.710526315789474 0.315789473684211 0.526315789473684 0.315789473684211
82 TCGA-A7-A5ZX 26 17 24 17 0.684210526315789 0.447368421052632 0.631578947368421 0.447368421052632
83 TCGA-AC-A23C 96 67 78 67 2.52631578947368 1.76315789473684 2.05263157894737 1.76315789473684
84 TCGA-AC-A23E 18 12 15 12 0.473684210526316 0.315789473684211 0.394736842105263 0.315789473684211
85 TCGA-AC-A23G 27 14 19 14 0.710526315789474 0.368421052631579 0.5 0.368421052631579
86 TCGA-AC-A23H 4526 2794 3452 2794 119.105263157895 73.5263157894737 90.8421052631579 73.5263157894737
87 TCGA-AC-A2B8 96 59 72 59 2.52631578947368 1.55263157894737 1.89473684210526 1.55263157894737
88 TCGA-AC-A2BK 80 45 61 45 2.10526315789474 1.18421052631579 1.60526315789474 1.18421052631579
89 TCGA-AC-A2BM 20 12 16 12 0.526315789473684 0.315789473684211 0.421052631578947 0.315789473684211
90 TCGA-AC-A2FB 16 10 13 10 0.421052631578947 0.263157894736842 0.342105263157895 0.263157894736842
91 TCGA-AC-A2FE 19 12 16 12 0.5 0.315789473684211 0.421052631578947 0.315789473684211
92 TCGA-AC-A2FF 15 13 15 13 0.394736842105263 0.342105263157895 0.394736842105263 0.342105263157895
93 TCGA-AC-A2FG 48 26 35 26 1.26315789473684 0.684210526315789 0.921052631578947 0.684210526315789
94 TCGA-AC-A2FK 0 0 0 0 0 0 0 0
95 TCGA-AC-A2FO 24 15 21 15 0.631578947368421 0.394736842105263 0.552631578947368 0.394736842105263
96 TCGA-AC-A2QH 81 57 69 57 2.13157894736842 1.5 1.81578947368421 1.5
97 TCGA-AC-A2QI 72 42 54 42 1.89473684210526 1.10526315789474 1.42105263157895 1.10526315789474
98 TCGA-AC-A2QJ 40 25 36 25 1.05263157894737 0.657894736842105 0.947368421052632 0.657894736842105
99 TCGA-AC-A3BB 78 44 56 44 2.05263157894737 1.15789473684211 1.47368421052632 1.15789473684211
100 TCGA-AC-A3EH 43 21 32 21 1.13157894736842 0.552631578947368 0.842105263157895 0.552631578947368