{ "cells": [ { "cell_type": "code", "execution_count": 17, "id": "f51e6ed2-079a-4a9c-a41d-02a11c95954c", "metadata": { "execution": { "iopub.execute_input": "2021-09-23T06:08:54.360100Z", "iopub.status.busy": "2021-09-23T06:08:54.356702Z", "iopub.status.idle": "2021-09-23T06:08:59.232023Z", "shell.execute_reply": "2021-09-23T06:08:59.230494Z" }, "scrolled": true, "tags": [], "vscode": { "languageId": "r" } }, "outputs": [ { "name": "stderr", "output_type": "stream", "text": [ "snapshotDate(): 2020-10-27\n", "\n" ] } ], "source": [ "library(ExperimentHub)\n", "library(HDF5Array)\n", "library(SummarizedExperiment)\n", "eh <- ExperimentHub() \n", "setwd(\"/data/ExtraDisk/sdd/longzhilin/Data/drugData/CMAP_LINCS_2020\")" ] }, { "cell_type": "code", "execution_count": 18, "id": "997d397b-78a1-4caa-9f02-57c6a7d7bfe0", "metadata": { "collapsed": true, "execution": { "iopub.execute_input": "2021-09-23T06:10:39.616836Z", "iopub.status.busy": "2021-09-23T06:10:39.613417Z", "iopub.status.idle": "2021-09-23T06:11:13.488294Z", "shell.execute_reply": "2021-09-23T06:11:13.487016Z" }, "jupyter": { "outputs_hidden": true }, "tags": [], "vscode": { "languageId": "r" } }, "outputs": [ { "data": { "text/plain": [ "ExperimentHub with 4 records\n", "# snapshotDate(): 2020-10-27\n", "# $dataprovider: Broad Institute, DrugBank, Broad Institute, STITCH\n", "# $species: Homo sapiens\n", "# $rdataclass: character, list\n", "# additional mcols(): taxonomyid, genome, description,\n", "# coordinate_1_based, maintainer, rdatadateadded, preparerclass, tags,\n", "# rdatapath, sourceurl, sourcetype \n", "# retrieve records with, e.g., 'object[[\"EH3226\"]]' \n", "\n", " title \n", " EH3226 | lincs \n", " EH3227 | lincs_expr \n", " EH3228 | dtlink_db_clue_sti\n", " EH3233 | taurefList " ] }, "metadata": {}, "output_type": "display_data" }, { "name": "stderr", "output_type": "stream", "text": [ "see ?signatureSearchData and browseVignettes('signatureSearchData') for documentation\n", "\n", "loading from cache\n", "\n" ] }, { "data": { "text/html": [ "\n", "\n", "\n", "\t\n", "\t\n", "\n", "\n", "\t\n", "\t\n", "\t\n", "\n", "
A data.frame: 3 × 5
groupnameotypedclassdim
<chr><chr><chr><chr><chr>
0/assay H5I_DATASETFLOAT 12328 x 45956
1/colnamesH5I_DATASETSTRING45956 x 1
2/rownamesH5I_DATASETSTRING12328 x 1
\n" ], "text/latex": [ "A data.frame: 3 × 5\n", "\\begin{tabular}{r|lllll}\n", " & group & name & otype & dclass & dim\\\\\n", " & & & & & \\\\\n", "\\hline\n", "\t0 & / & assay & H5I\\_DATASET & FLOAT & 12328 x 45956\\\\\n", "\t1 & / & colnames & H5I\\_DATASET & STRING & 45956 x 1 \\\\\n", "\t2 & / & rownames & H5I\\_DATASET & STRING & 12328 x 1 \\\\\n", "\\end{tabular}\n" ], "text/markdown": [ "\n", "A data.frame: 3 × 5\n", "\n", "| | group <chr> | name <chr> | otype <chr> | dclass <chr> | dim <chr> |\n", "|---|---|---|---|---|---|\n", "| 0 | / | assay | H5I_DATASET | FLOAT | 12328 x 45956 |\n", "| 1 | / | colnames | H5I_DATASET | STRING | 45956 x 1 |\n", "| 2 | / | rownames | H5I_DATASET | STRING | 12328 x 1 |\n", "\n" ], "text/plain": [ " group name otype dclass dim \n", "0 / assay H5I_DATASET FLOAT 12328 x 45956\n", "1 / colnames H5I_DATASET STRING 45956 x 1 \n", "2 / rownames H5I_DATASET STRING 12328 x 1 " ] }, "metadata": {}, "output_type": "display_data" }, { "data": { "text/html": [ "\n", "\n", "\n", "\t\n", "\n", "\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\n", "
A matrix: 12328 × 45956 of type dbl
BRD-A03772856__CD34__trt_cptrichostatin-a__CD34__trt_cpgeldanamycin__CD34__trt_cpKUC107191N__CD34__trt_cpBRD-A35207501__CD34__trt_cpiloprost__CD34__trt_cpBRD-A72498772__CD34__trt_cpBRD-A72796238__CD34__trt_cpBRD-A73513677__CD34__trt_cpBRD-A73558769__CD34__trt_cpMW-MITF24__MCF7__trt_cpl-buthionine-sulfoximine__PC3__trt_cpalpha-tocopherol__PC3__trt_cpcisplatin__PC3__trt_cpiniparib__PC3__trt_cpJMW-MITF1__PC3__trt_cpbortezomib__PC3__trt_cpselumetinib__PC3__trt_cpglutamine__PC3__trt_cpMW-MITF24__PC3__trt_cp
5720 0.36540002-1.9333-1.78014994-0.61925000-0.729250073-2.01719809 0.18455000-1.1793000 0.34680000 0.10225001-2.1606-0.2913-1.2731-0.5659 0.4571 0.0308-0.2913-0.9489-1.0550-1.9929
466 0.69385004-4.0653-2.45910001 0.05739999 1.069949985-1.52120280-0.19575000 1.3569000 0.32670000 0.36719999-1.9576-0.6859 0.5907-0.2468 0.7582 0.4957-1.0830 0.3153 1.3292-0.5015
6009 0.55435002 0.1850 0.22250000 0.05124998 0.336199999-1.32433784 0.78560001-0.2471000 1.50240004-0.47415000-1.9373-0.7577-1.8149 0.0000 0.3941-1.6190 0.1462-2.1747-0.2952-2.1053
2309-0.31579998 2.2660 0.67035002-0.39039999 1.141200066 0.91430640 0.45165002 0.1099000-0.58609998-1.34329998 0.9808-0.0848-1.5376 0.6194-0.2978 0.5139 2.9324-0.9933-0.0140-1.1789
387 0.37180001-0.2558-2.59875011-2.12490010 1.495700002-3.34633827-0.03835000-0.9017001 1.18655002 0.68274999-1.5168 0.0997-0.3862 0.1973-0.4246-0.5682 0.6157-0.3696 0.3436-3.2787
3553 0.70824999-0.5149-0.73619998-0.41515002 1.960999966 0.22129090-0.20070001 0.8321000 2.93820000-0.08945002 3.2767 0.0000-0.1367-0.6745-1.0342-1.3800-0.9713 1.2338-1.3174-0.6564
427 0.18295000-1.6045 0.42860001 0.30954999 1.228850007 0.06338993 0.44700000 0.3969500 0.57410002-0.11010003 0.5427-0.5669-0.7753-0.8029 1.6375 1.7251 1.2290 0.0243-0.7690-0.6058
5898-0.40434998 3.5042 2.97979999-0.84810001 1.905500054 0.31654096-0.01730000-0.1905500-0.82900000-0.52789998-0.3057 0.1609 0.2776 0.0750-2.8649 0.5809 1.7948-0.0093 1.2902 0.2903
23365 0.49500000 0.4630 0.48894998-0.25070000 0.521200001-0.62915254-0.67110002-0.7869500 0.49564999 1.38380003-0.7719-0.3665 0.7769 0.3405-0.6687 0.4276-2.5250 0.0963 0.0482 0.0963
6657-0.58120000 2.3181 1.18390000 0.32394999 0.963199973 1.12940836-0.09670001 1.5269001-0.28994998-0.26674998 2.3400 0.8720 1.4368 0.5604-1.3073-0.8898-0.4415 0.7747-0.3321 2.5004
5054-0.25055000-0.2075-0.43175000 0.16700003 1.369400024 1.35352969-0.11345001 0.5116500-0.07969996-0.21934998 0.6593 0.2299 0.5751 0.2370 0.4596 0.3050-1.6550 0.0137 0.4267 0.6745
3108-0.06060000-1.8116-1.61284995-0.08275000-0.534399986-0.13355637-0.01085000-1.5620000 0.59775001 0.97039998 0.6745 0.3049-0.5842-0.3346 1.3939-0.4618 0.4915 0.0590 0.1180 1.7550
1950 0.34324998-0.3875 1.33039999 0.69085002-1.051300049 3.66408134 0.38674998 2.6680501-0.73095000-0.51055002 0.8943 0.2505 1.1675-0.0811-0.4084-0.6610-0.0670 1.3110-1.1154 2.5754
351-0.75015002 0.0000 1.67859995 0.01835000 0.958649993 0.42959470 0.31160000 0.9131501 0.33724999-0.51849997 1.2067 0.8746-1.4754 0.3245 1.2609 0.4734 1.3987-0.1130-0.8090 0.3988
4846 0.44309998 2.6904 1.82799995 0.63379997 0.361950010 1.81054175 0.38900000 3.5537500-0.76929998-0.95864999-1.2723 1.0611 0.0000 0.8742 0.5819 0.4788 1.4877-0.3579-0.6335-0.7591
1452 0.05585000-0.3123 0.57295001-0.44580001 0.636549950-0.72561306-3.03379989-0.7344500 0.70099998 0.10130000-1.9790 0.3489-0.7107-1.8170 0.3777-1.1747 1.5557-0.0845-1.1233-1.5332
4776-0.92770004 0.6834 2.35645008 1.05629992-0.044949993 0.66652113-0.03335000 2.2428999 0.25165001 0.55704999 3.3373 0.5311 1.3320 0.3057-0.9554-0.9277-1.0772 0.3361-0.9042 3.1649
6908 0.20305002 1.6617-0.03129999 0.27434999 0.650349975-0.19393554-0.39605001 0.2097500 0.72994995 0.24660000-2.6201 0.3546-0.8340 0.1707 0.7447 0.8058-0.3623-1.9207 0.1919-1.5016
672 0.32475001-4.0764-3.70605016 0.08045001-0.453600019-0.40477309 0.57854998 0.4603500-0.35640001-0.57574999-0.0347 0.5236-1.3417 0.5860 0.7067-0.6479 2.8601 2.8988-0.1277 0.1526
5710 0.63964999 0.2391 0.23535000-1.49465001-1.058050036-1.23082113 0.30835003-1.5607500-1.05330002 1.03775001-0.8548 0.0244-0.4195 0.8007 0.8163-0.6469 2.6838-0.4705-1.5872-1.9920
2115-0.46765000 2.5311 0.92490000 0.27040002-0.008450001 1.54992425 0.02805001 0.9752501-0.80159998-0.07155001 1.7185 0.0407 0.8669-2.4175-1.3462 0.1283-0.6444 0.9818-0.0399 0.1548
7015-0.62810004 2.9025 1.92159998 0.28770000 0.454999983 1.53958702 0.56625003 0.9501500-0.29589999-0.62774998 1.2487 0.5907 0.8714 0.6421-0.9362-0.4963-0.4187 0.6203-0.1979 3.4552
8726 0.46415001-3.4828-2.23075008 0.99154997 0.230650008 0.27298701 0.02245000-0.7093000-0.07795000-0.39450002-1.6259-0.1834-0.9279-5.2129-0.4035 0.8041 1.4548 1.4854 1.7362 1.4854
2185-0.59829998-2.5377 4.76999998-0.27070001-2.783349991 1.25042439-0.24249998-3.3810499-0.36440000 0.63944995 2.5788 1.2502 1.2122 0.2189-0.3260-0.4259-0.4624 1.4268-1.4473 2.8440
3315-0.22889999-1.1686 1.73409986 0.21175002-3.493849993 0.21799627-0.32495001-2.3188000-0.12619999-0.08780000 0.0000-0.5599-0.7747 0.9959-0.9554-0.6129 2.3237-0.7365-0.4083-3.0874
5289 0.04359999 3.6465 3.03125000 0.90630001 0.187049985 3.19396544-0.23465000 1.0276000-0.56045002-0.05330001 0.8281-0.9206 0.6822-0.9480-0.2322-1.1048 0.8300 0.4654-0.5206 0.6745
868 0.10220000 0.8592 1.81244993-0.25509998 0.549250007-0.19470868-0.59965003 0.4235500-0.48370001-1.28314996 0.1421 0.7650 0.4446 0.2584 0.1067 0.5922 1.3067-0.8527-0.3135 0.8328
1677-0.20805000 0.7930 1.97329998 0.54895002-0.111049995 1.75220299-0.52419996 0.9599000-0.76335001-0.10170000 0.3969 0.9042 0.0418 0.4508 0.3277 4.0569-3.5420-0.8606-0.0633 2.4948
7043-0.27850002 2.4205 0.82440001-0.50725001 1.212399960-0.33966029-0.46219999 0.2445500-0.48930001 0.63644999 0.0147 1.1314 1.5184 1.1396-0.7535-0.1550-0.5552 0.9483 0.5121 0.9929
5613-0.66865003 0.5340 3.83539987 0.60944998-1.195199966 1.74077058-0.14775001-0.1435000 0.24705002 0.45889997 0.0717 0.5023 0.3477-2.3664-0.3586-0.3032-0.4723-0.3586-0.7751 1.1149
54552-0.547550023 0.5666 0.74390000-0.32515001 1.286950111 0.6714719-0.372799993 1.4985501-0.04715000-0.15339999 1.8504-0.2516 1.3114-0.1993-1.4090-0.4407-2.0924 0.6877 0.7649-0.1186
54920-0.190850005 2.6847 0.61905003 0.51645005-0.408650011 1.7125645-0.076900005-0.5360000-1.17120004 0.30594999 0.4583 0.8514 0.3027 1.4400-1.0779-0.6745 0.0638 0.4723 0.0850 0.7503
11178-0.007799983 1.4589 0.63424999-0.62494999 0.307300001-0.3424515-0.897199988 0.0240500-0.16354999 0.00515002-1.7519 0.3908-1.0155-0.2487-0.6887-0.6171-0.5462-0.1172-1.4105 0.1631
93643-0.781599998 0.9777 2.61190009 0.64004999 0.713050008 0.9237132 0.206200004 0.4028500 0.18150002-1.33759999 2.1395-0.4617 1.2257 0.0263-1.3893-1.9883 0.7824 0.2161-0.5916 2.0450
112869-0.174050003 0.1336-0.16070001 0.83440006 0.434750021 0.5052795 0.133000001-0.2637000-0.80325001-0.37760001 2.3786 1.1703 1.1386 0.7210-0.1182-0.0510-1.0956 0.8456-0.5989 1.1402
51147-0.131500006 2.5702 2.79585004 0.60960001 1.184949994 0.1883786-0.194200009 0.8002999-0.16949999 0.07554999 1.9107 1.5612 0.3518 1.2840-1.4728-0.3504 0.0130 0.4459-0.4840 0.9162
196403-0.179949999 3.3629 2.99699998 1.06465006 0.325349987 1.2875153-0.328400016 1.8518502-0.13325000-1.07975006 1.4798 0.1850 1.3844 0.3240-0.4564 0.3414 0.1307 0.2026-1.4586 1.7090
389677-0.299800009-1.7546 1.62085009 0.17885001 0.346049994 2.1395676 0.425999999 0.2757500-0.60355002-0.66229999 0.6175-0.6872 1.1080-0.3949-0.7650 0.6032-0.5789 0.8575 1.2912-0.5854
1296-0.568499982 4.0283 1.80404997 0.68540001 1.193750024-0.3998278-0.204600006 2.2550499 0.10470000 0.11945000 0.9755 0.6923-0.1845 0.1797-0.0929 0.0885 0.6156 0.2872-0.6606 0.7912
85352-0.582249999 2.8892 2.65304995 0.62145001 0.426599979 1.1645755 0.086000010 1.2165500 0.69494998-0.19315001-0.0009 3.7638 1.6589 0.1591-0.6720-1.0518-1.5408-0.1605 0.1139 2.4243
57610 0.498400003 5.1220 2.16345000 0.01574999 0.200550005 0.1731201-0.926600039 0.0807500-0.57225001 0.07119998 1.5447-0.0599 1.6722 0.2858 1.6272-0.8244 0.9907 0.4710 0.1368 1.4276
27147-0.202250004 2.5838 1.67175007-0.22469999 1.058600068 0.6260329-0.410300016 0.1346500-0.54540002-0.01105000 1.3721-0.4534-0.3415 0.3251-1.3887 0.4315 0.1750-0.6396-1.0847 1.3937
79591 1.026950002 2.7480-0.06799999 0.64854997 1.501299977 1.2647009 0.523100019-0.0559500 0.24710000 0.37870002 2.1479 1.1361-0.7604 1.6378-0.0226 0.0510-0.0003-0.4592 0.8158 1.6554
92595 0.652800024-0.7214 0.21370000 0.66485000 1.284350038 0.5647974 0.559400022 1.5563999 0.02030000-0.36090001 0.3339 1.3473 0.0010 0.0615-0.2524 0.0479-0.3532-0.2950 0.0858 0.1184
51063 0.343500018-0.8015 0.33515000 1.91869998 0.368699998 0.5586674-0.298150003 0.2594000 0.28309998 0.09540004 0.9597 1.8933 1.1444 0.9759-0.1300-0.5763-0.3481-1.0736-0.0896 1.2923
55223-0.215350002 4.3713 1.97140002 0.29425001 1.258400083 0.8483824 0.505299985 0.4320000-0.73879999-1.00734997-0.7425 1.5926 0.3204 0.3486-1.2565-0.0055-0.3076-0.5895-0.6759 1.1372
80022-0.499350011 3.3540 2.46420002 0.21785000-0.007000007 1.1016043 0.208849996-0.3577000-0.80614996 0.93999994 1.0909 0.1379 0.6538 0.9385-0.8598-0.1190-1.1109 0.0832-0.2971 0.8936
55589 0.989849985-1.7614-0.52405000-0.53944999 2.766950130-1.4092908 0.037900001 0.5296500 0.20385003-0.57599998-1.7398 1.1566-0.5645 1.4264 1.8400-0.1273 1.2060 0.2184 1.3779-0.5626
376267-0.697149992 1.8690 0.45809996-0.03180003 1.338700056-0.2823215-0.157900006 1.0916001-0.20415001-0.42180002 0.1199 1.2685 0.9052 0.0267 0.0809-1.1636 0.2976 1.9446-0.9014 1.8036
84820-0.152749985 1.8001 1.37894988 0.01440001 1.192999959 1.6359860-0.251900017 1.5041499-0.12639999-0.49724999 1.1424-0.0597 0.7671 0.5935-0.5742-1.0844-0.5707 2.0601-0.2694 1.1255
2931-0.489800006 4.3996 2.27640009 0.27145001-0.035150021 0.5720488-0.576700032 0.1173000-0.68005002 0.33640003 0.2727 0.5013 0.8471 0.2688 0.7681-0.5762-0.8154-0.0992-0.7370 1.7226
63876-0.252000004 2.4605 1.21990001-0.08165000 1.008049965 0.7371939-0.005400002 0.2307501-0.44770002-0.46705002-0.7579-0.6265 0.8404-0.2692 0.8911-0.2046-0.8071-0.1506-1.6715 0.9172
51275-0.829549968 2.4557 2.40814996 0.42320001-0.335050017-0.9146695 0.963299990 1.4400499 0.39770001 0.27579999 0.3883 0.6793 0.3237-0.4276 0.7665 0.5685-1.0498 1.5715-1.7042-0.0870
158747-0.933599949 2.2661 2.48624992 1.50850010-1.788749933-0.1306736-0.646350026-1.1307499 0.18900004 1.36570001 2.4502 1.9125 0.2526 0.5455 0.1402-0.9180-1.9362 1.3076-0.5795 0.3890
283232-0.549999952 1.0838 0.41525000-0.09474999 1.855700016-0.2727659-0.094699994 1.7906501-0.75310004 0.58985001 0.3257 1.1194 0.5754-0.4345-3.3375 0.5196-1.5637 1.1416 0.2517-0.1119
25960 0.060000002 1.8776 0.34240001-0.22815000 1.623250008-0.5708635 0.072649986 0.1602500 0.26474997 0.05900000 0.8320-0.3680 0.6608-0.2463-2.4105 0.1107-0.2676 0.6119 1.1775 0.9155
6376-0.391449988 2.0942 1.54129994 0.29714999-0.322299987 0.6695740 0.684000015-0.2364000-0.22969997-1.19679999 1.1901-0.0144 1.5630 0.3335 1.0411-1.1291 0.6466 1.4029-1.0273 0.0192
11033-0.816999972 0.0360 1.86659992 1.18130004-1.078150034 2.5671935-0.160849988 0.1246000 1.15509999 0.12650001 1.2484-0.1491 0.0777 0.3478-0.7770-0.2837-0.0944 0.7815-0.3094 2.2588
54869-0.491949975 3.9373 2.89374995 0.08510001-1.110100031 1.1950539-0.178350002 1.4240000-0.01594999 1.36944997-0.1743 1.0657 0.7791 1.0932-0.5247-0.5104-0.2863-0.5035 1.2087 2.5072
60-0.487500012-0.0225-0.53219998-0.72780001-0.636449993-0.1309013-0.509249985-0.4348000 0.53165001 0.25479999-1.4556-0.2475-0.6307-0.2042 0.7773 0.3077 1.8114-1.0285 0.0535-1.3198
\n" ], "text/latex": [ "A matrix: 12328 × 45956 of type dbl\n", "\\begin{tabular}{r|lllllllllllllllllllll}\n", " & BRD-A03772856\\_\\_CD34\\_\\_trt\\_cp & trichostatin-a\\_\\_CD34\\_\\_trt\\_cp & geldanamycin\\_\\_CD34\\_\\_trt\\_cp & KUC107191N\\_\\_CD34\\_\\_trt\\_cp & BRD-A35207501\\_\\_CD34\\_\\_trt\\_cp & iloprost\\_\\_CD34\\_\\_trt\\_cp & BRD-A72498772\\_\\_CD34\\_\\_trt\\_cp & BRD-A72796238\\_\\_CD34\\_\\_trt\\_cp & BRD-A73513677\\_\\_CD34\\_\\_trt\\_cp & BRD-A73558769\\_\\_CD34\\_\\_trt\\_cp & ⋯ & MW-MITF24\\_\\_MCF7\\_\\_trt\\_cp & l-buthionine-sulfoximine\\_\\_PC3\\_\\_trt\\_cp & alpha-tocopherol\\_\\_PC3\\_\\_trt\\_cp & cisplatin\\_\\_PC3\\_\\_trt\\_cp & iniparib\\_\\_PC3\\_\\_trt\\_cp & JMW-MITF1\\_\\_PC3\\_\\_trt\\_cp & bortezomib\\_\\_PC3\\_\\_trt\\_cp & selumetinib\\_\\_PC3\\_\\_trt\\_cp & glutamine\\_\\_PC3\\_\\_trt\\_cp & MW-MITF24\\_\\_PC3\\_\\_trt\\_cp\\\\\n", "\\hline\n", "\t5720 & 0.36540002 & -1.9333 & -1.78014994 & -0.61925000 & -0.729250073 & -2.01719809 & 0.18455000 & -1.1793000 & 0.34680000 & 0.10225001 & ⋯ & -2.1606 & -0.2913 & -1.2731 & -0.5659 & 0.4571 & 0.0308 & -0.2913 & -0.9489 & -1.0550 & -1.9929\\\\\n", "\t466 & 0.69385004 & -4.0653 & -2.45910001 & 0.05739999 & 1.069949985 & -1.52120280 & -0.19575000 & 1.3569000 & 0.32670000 & 0.36719999 & ⋯ & -1.9576 & -0.6859 & 0.5907 & -0.2468 & 0.7582 & 0.4957 & -1.0830 & 0.3153 & 1.3292 & -0.5015\\\\\n", "\t6009 & 0.55435002 & 0.1850 & 0.22250000 & 0.05124998 & 0.336199999 & -1.32433784 & 0.78560001 & -0.2471000 & 1.50240004 & -0.47415000 & ⋯ & -1.9373 & -0.7577 & -1.8149 & 0.0000 & 0.3941 & -1.6190 & 0.1462 & -2.1747 & -0.2952 & -2.1053\\\\\n", "\t2309 & -0.31579998 & 2.2660 & 0.67035002 & -0.39039999 & 1.141200066 & 0.91430640 & 0.45165002 & 0.1099000 & -0.58609998 & -1.34329998 & ⋯ & 0.9808 & -0.0848 & -1.5376 & 0.6194 & -0.2978 & 0.5139 & 2.9324 & -0.9933 & -0.0140 & -1.1789\\\\\n", "\t387 & 0.37180001 & -0.2558 & -2.59875011 & -2.12490010 & 1.495700002 & -3.34633827 & -0.03835000 & -0.9017001 & 1.18655002 & 0.68274999 & ⋯ & -1.5168 & 0.0997 & -0.3862 & 0.1973 & -0.4246 & -0.5682 & 0.6157 & -0.3696 & 0.3436 & -3.2787\\\\\n", "\t3553 & 0.70824999 & -0.5149 & -0.73619998 & -0.41515002 & 1.960999966 & 0.22129090 & -0.20070001 & 0.8321000 & 2.93820000 & -0.08945002 & ⋯ & 3.2767 & 0.0000 & -0.1367 & -0.6745 & -1.0342 & -1.3800 & -0.9713 & 1.2338 & -1.3174 & -0.6564\\\\\n", "\t427 & 0.18295000 & -1.6045 & 0.42860001 & 0.30954999 & 1.228850007 & 0.06338993 & 0.44700000 & 0.3969500 & 0.57410002 & -0.11010003 & ⋯ & 0.5427 & -0.5669 & -0.7753 & -0.8029 & 1.6375 & 1.7251 & 1.2290 & 0.0243 & -0.7690 & -0.6058\\\\\n", "\t5898 & -0.40434998 & 3.5042 & 2.97979999 & -0.84810001 & 1.905500054 & 0.31654096 & -0.01730000 & -0.1905500 & -0.82900000 & -0.52789998 & ⋯ & -0.3057 & 0.1609 & 0.2776 & 0.0750 & -2.8649 & 0.5809 & 1.7948 & -0.0093 & 1.2902 & 0.2903\\\\\n", "\t23365 & 0.49500000 & 0.4630 & 0.48894998 & -0.25070000 & 0.521200001 & -0.62915254 & -0.67110002 & -0.7869500 & 0.49564999 & 1.38380003 & ⋯ & -0.7719 & -0.3665 & 0.7769 & 0.3405 & -0.6687 & 0.4276 & -2.5250 & 0.0963 & 0.0482 & 0.0963\\\\\n", "\t6657 & -0.58120000 & 2.3181 & 1.18390000 & 0.32394999 & 0.963199973 & 1.12940836 & -0.09670001 & 1.5269001 & -0.28994998 & -0.26674998 & ⋯ & 2.3400 & 0.8720 & 1.4368 & 0.5604 & -1.3073 & -0.8898 & -0.4415 & 0.7747 & -0.3321 & 2.5004\\\\\n", "\t5054 & -0.25055000 & -0.2075 & -0.43175000 & 0.16700003 & 1.369400024 & 1.35352969 & -0.11345001 & 0.5116500 & -0.07969996 & -0.21934998 & ⋯ & 0.6593 & 0.2299 & 0.5751 & 0.2370 & 0.4596 & 0.3050 & -1.6550 & 0.0137 & 0.4267 & 0.6745\\\\\n", "\t3108 & -0.06060000 & -1.8116 & -1.61284995 & -0.08275000 & -0.534399986 & -0.13355637 & -0.01085000 & -1.5620000 & 0.59775001 & 0.97039998 & ⋯ & 0.6745 & 0.3049 & -0.5842 & -0.3346 & 1.3939 & -0.4618 & 0.4915 & 0.0590 & 0.1180 & 1.7550\\\\\n", "\t1950 & 0.34324998 & -0.3875 & 1.33039999 & 0.69085002 & -1.051300049 & 3.66408134 & 0.38674998 & 2.6680501 & -0.73095000 & -0.51055002 & ⋯ & 0.8943 & 0.2505 & 1.1675 & -0.0811 & -0.4084 & -0.6610 & -0.0670 & 1.3110 & -1.1154 & 2.5754\\\\\n", "\t351 & -0.75015002 & 0.0000 & 1.67859995 & 0.01835000 & 0.958649993 & 0.42959470 & 0.31160000 & 0.9131501 & 0.33724999 & -0.51849997 & ⋯ & 1.2067 & 0.8746 & -1.4754 & 0.3245 & 1.2609 & 0.4734 & 1.3987 & -0.1130 & -0.8090 & 0.3988\\\\\n", "\t4846 & 0.44309998 & 2.6904 & 1.82799995 & 0.63379997 & 0.361950010 & 1.81054175 & 0.38900000 & 3.5537500 & -0.76929998 & -0.95864999 & ⋯ & -1.2723 & 1.0611 & 0.0000 & 0.8742 & 0.5819 & 0.4788 & 1.4877 & -0.3579 & -0.6335 & -0.7591\\\\\n", "\t1452 & 0.05585000 & -0.3123 & 0.57295001 & -0.44580001 & 0.636549950 & -0.72561306 & -3.03379989 & -0.7344500 & 0.70099998 & 0.10130000 & ⋯ & -1.9790 & 0.3489 & -0.7107 & -1.8170 & 0.3777 & -1.1747 & 1.5557 & -0.0845 & -1.1233 & -1.5332\\\\\n", "\t4776 & -0.92770004 & 0.6834 & 2.35645008 & 1.05629992 & -0.044949993 & 0.66652113 & -0.03335000 & 2.2428999 & 0.25165001 & 0.55704999 & ⋯ & 3.3373 & 0.5311 & 1.3320 & 0.3057 & -0.9554 & -0.9277 & -1.0772 & 0.3361 & -0.9042 & 3.1649\\\\\n", "\t6908 & 0.20305002 & 1.6617 & -0.03129999 & 0.27434999 & 0.650349975 & -0.19393554 & -0.39605001 & 0.2097500 & 0.72994995 & 0.24660000 & ⋯ & -2.6201 & 0.3546 & -0.8340 & 0.1707 & 0.7447 & 0.8058 & -0.3623 & -1.9207 & 0.1919 & -1.5016\\\\\n", "\t672 & 0.32475001 & -4.0764 & -3.70605016 & 0.08045001 & -0.453600019 & -0.40477309 & 0.57854998 & 0.4603500 & -0.35640001 & -0.57574999 & ⋯ & -0.0347 & 0.5236 & -1.3417 & 0.5860 & 0.7067 & -0.6479 & 2.8601 & 2.8988 & -0.1277 & 0.1526\\\\\n", "\t5710 & 0.63964999 & 0.2391 & 0.23535000 & -1.49465001 & -1.058050036 & -1.23082113 & 0.30835003 & -1.5607500 & -1.05330002 & 1.03775001 & ⋯ & -0.8548 & 0.0244 & -0.4195 & 0.8007 & 0.8163 & -0.6469 & 2.6838 & -0.4705 & -1.5872 & -1.9920\\\\\n", "\t2115 & -0.46765000 & 2.5311 & 0.92490000 & 0.27040002 & -0.008450001 & 1.54992425 & 0.02805001 & 0.9752501 & -0.80159998 & -0.07155001 & ⋯ & 1.7185 & 0.0407 & 0.8669 & -2.4175 & -1.3462 & 0.1283 & -0.6444 & 0.9818 & -0.0399 & 0.1548\\\\\n", "\t7015 & -0.62810004 & 2.9025 & 1.92159998 & 0.28770000 & 0.454999983 & 1.53958702 & 0.56625003 & 0.9501500 & -0.29589999 & -0.62774998 & ⋯ & 1.2487 & 0.5907 & 0.8714 & 0.6421 & -0.9362 & -0.4963 & -0.4187 & 0.6203 & -0.1979 & 3.4552\\\\\n", "\t8726 & 0.46415001 & -3.4828 & -2.23075008 & 0.99154997 & 0.230650008 & 0.27298701 & 0.02245000 & -0.7093000 & -0.07795000 & -0.39450002 & ⋯ & -1.6259 & -0.1834 & -0.9279 & -5.2129 & -0.4035 & 0.8041 & 1.4548 & 1.4854 & 1.7362 & 1.4854\\\\\n", "\t2185 & -0.59829998 & -2.5377 & 4.76999998 & -0.27070001 & -2.783349991 & 1.25042439 & -0.24249998 & -3.3810499 & -0.36440000 & 0.63944995 & ⋯ & 2.5788 & 1.2502 & 1.2122 & 0.2189 & -0.3260 & -0.4259 & -0.4624 & 1.4268 & -1.4473 & 2.8440\\\\\n", "\t3315 & -0.22889999 & -1.1686 & 1.73409986 & 0.21175002 & -3.493849993 & 0.21799627 & -0.32495001 & -2.3188000 & -0.12619999 & -0.08780000 & ⋯ & 0.0000 & -0.5599 & -0.7747 & 0.9959 & -0.9554 & -0.6129 & 2.3237 & -0.7365 & -0.4083 & -3.0874\\\\\n", "\t5289 & 0.04359999 & 3.6465 & 3.03125000 & 0.90630001 & 0.187049985 & 3.19396544 & -0.23465000 & 1.0276000 & -0.56045002 & -0.05330001 & ⋯ & 0.8281 & -0.9206 & 0.6822 & -0.9480 & -0.2322 & -1.1048 & 0.8300 & 0.4654 & -0.5206 & 0.6745\\\\\n", "\t868 & 0.10220000 & 0.8592 & 1.81244993 & -0.25509998 & 0.549250007 & -0.19470868 & -0.59965003 & 0.4235500 & -0.48370001 & -1.28314996 & ⋯ & 0.1421 & 0.7650 & 0.4446 & 0.2584 & 0.1067 & 0.5922 & 1.3067 & -0.8527 & -0.3135 & 0.8328\\\\\n", "\t1677 & -0.20805000 & 0.7930 & 1.97329998 & 0.54895002 & -0.111049995 & 1.75220299 & -0.52419996 & 0.9599000 & -0.76335001 & -0.10170000 & ⋯ & 0.3969 & 0.9042 & 0.0418 & 0.4508 & 0.3277 & 4.0569 & -3.5420 & -0.8606 & -0.0633 & 2.4948\\\\\n", "\t7043 & -0.27850002 & 2.4205 & 0.82440001 & -0.50725001 & 1.212399960 & -0.33966029 & -0.46219999 & 0.2445500 & -0.48930001 & 0.63644999 & ⋯ & 0.0147 & 1.1314 & 1.5184 & 1.1396 & -0.7535 & -0.1550 & -0.5552 & 0.9483 & 0.5121 & 0.9929\\\\\n", "\t5613 & -0.66865003 & 0.5340 & 3.83539987 & 0.60944998 & -1.195199966 & 1.74077058 & -0.14775001 & -0.1435000 & 0.24705002 & 0.45889997 & ⋯ & 0.0717 & 0.5023 & 0.3477 & -2.3664 & -0.3586 & -0.3032 & -0.4723 & -0.3586 & -0.7751 & 1.1149\\\\\n", "\t⋮ & ⋮ & ⋮ & ⋮ & ⋮ & ⋮ & ⋮ & ⋮ & ⋮ & ⋮ & ⋮ & ⋱ & ⋮ & ⋮ & ⋮ & ⋮ & ⋮ & ⋮ & ⋮ & ⋮ & ⋮ & ⋮\\\\\n", "\t54552 & -0.547550023 & 0.5666 & 0.74390000 & -0.32515001 & 1.286950111 & 0.6714719 & -0.372799993 & 1.4985501 & -0.04715000 & -0.15339999 & ⋯ & 1.8504 & -0.2516 & 1.3114 & -0.1993 & -1.4090 & -0.4407 & -2.0924 & 0.6877 & 0.7649 & -0.1186\\\\\n", "\t54920 & -0.190850005 & 2.6847 & 0.61905003 & 0.51645005 & -0.408650011 & 1.7125645 & -0.076900005 & -0.5360000 & -1.17120004 & 0.30594999 & ⋯ & 0.4583 & 0.8514 & 0.3027 & 1.4400 & -1.0779 & -0.6745 & 0.0638 & 0.4723 & 0.0850 & 0.7503\\\\\n", "\t11178 & -0.007799983 & 1.4589 & 0.63424999 & -0.62494999 & 0.307300001 & -0.3424515 & -0.897199988 & 0.0240500 & -0.16354999 & 0.00515002 & ⋯ & -1.7519 & 0.3908 & -1.0155 & -0.2487 & -0.6887 & -0.6171 & -0.5462 & -0.1172 & -1.4105 & 0.1631\\\\\n", "\t93643 & -0.781599998 & 0.9777 & 2.61190009 & 0.64004999 & 0.713050008 & 0.9237132 & 0.206200004 & 0.4028500 & 0.18150002 & -1.33759999 & ⋯ & 2.1395 & -0.4617 & 1.2257 & 0.0263 & -1.3893 & -1.9883 & 0.7824 & 0.2161 & -0.5916 & 2.0450\\\\\n", "\t112869 & -0.174050003 & 0.1336 & -0.16070001 & 0.83440006 & 0.434750021 & 0.5052795 & 0.133000001 & -0.2637000 & -0.80325001 & -0.37760001 & ⋯ & 2.3786 & 1.1703 & 1.1386 & 0.7210 & -0.1182 & -0.0510 & -1.0956 & 0.8456 & -0.5989 & 1.1402\\\\\n", "\t51147 & -0.131500006 & 2.5702 & 2.79585004 & 0.60960001 & 1.184949994 & 0.1883786 & -0.194200009 & 0.8002999 & -0.16949999 & 0.07554999 & ⋯ & 1.9107 & 1.5612 & 0.3518 & 1.2840 & -1.4728 & -0.3504 & 0.0130 & 0.4459 & -0.4840 & 0.9162\\\\\n", "\t196403 & -0.179949999 & 3.3629 & 2.99699998 & 1.06465006 & 0.325349987 & 1.2875153 & -0.328400016 & 1.8518502 & -0.13325000 & -1.07975006 & ⋯ & 1.4798 & 0.1850 & 1.3844 & 0.3240 & -0.4564 & 0.3414 & 0.1307 & 0.2026 & -1.4586 & 1.7090\\\\\n", "\t389677 & -0.299800009 & -1.7546 & 1.62085009 & 0.17885001 & 0.346049994 & 2.1395676 & 0.425999999 & 0.2757500 & -0.60355002 & -0.66229999 & ⋯ & 0.6175 & -0.6872 & 1.1080 & -0.3949 & -0.7650 & 0.6032 & -0.5789 & 0.8575 & 1.2912 & -0.5854\\\\\n", "\t1296 & -0.568499982 & 4.0283 & 1.80404997 & 0.68540001 & 1.193750024 & -0.3998278 & -0.204600006 & 2.2550499 & 0.10470000 & 0.11945000 & ⋯ & 0.9755 & 0.6923 & -0.1845 & 0.1797 & -0.0929 & 0.0885 & 0.6156 & 0.2872 & -0.6606 & 0.7912\\\\\n", "\t85352 & -0.582249999 & 2.8892 & 2.65304995 & 0.62145001 & 0.426599979 & 1.1645755 & 0.086000010 & 1.2165500 & 0.69494998 & -0.19315001 & ⋯ & -0.0009 & 3.7638 & 1.6589 & 0.1591 & -0.6720 & -1.0518 & -1.5408 & -0.1605 & 0.1139 & 2.4243\\\\\n", "\t57610 & 0.498400003 & 5.1220 & 2.16345000 & 0.01574999 & 0.200550005 & 0.1731201 & -0.926600039 & 0.0807500 & -0.57225001 & 0.07119998 & ⋯ & 1.5447 & -0.0599 & 1.6722 & 0.2858 & 1.6272 & -0.8244 & 0.9907 & 0.4710 & 0.1368 & 1.4276\\\\\n", "\t27147 & -0.202250004 & 2.5838 & 1.67175007 & -0.22469999 & 1.058600068 & 0.6260329 & -0.410300016 & 0.1346500 & -0.54540002 & -0.01105000 & ⋯ & 1.3721 & -0.4534 & -0.3415 & 0.3251 & -1.3887 & 0.4315 & 0.1750 & -0.6396 & -1.0847 & 1.3937\\\\\n", "\t79591 & 1.026950002 & 2.7480 & -0.06799999 & 0.64854997 & 1.501299977 & 1.2647009 & 0.523100019 & -0.0559500 & 0.24710000 & 0.37870002 & ⋯ & 2.1479 & 1.1361 & -0.7604 & 1.6378 & -0.0226 & 0.0510 & -0.0003 & -0.4592 & 0.8158 & 1.6554\\\\\n", "\t92595 & 0.652800024 & -0.7214 & 0.21370000 & 0.66485000 & 1.284350038 & 0.5647974 & 0.559400022 & 1.5563999 & 0.02030000 & -0.36090001 & ⋯ & 0.3339 & 1.3473 & 0.0010 & 0.0615 & -0.2524 & 0.0479 & -0.3532 & -0.2950 & 0.0858 & 0.1184\\\\\n", "\t51063 & 0.343500018 & -0.8015 & 0.33515000 & 1.91869998 & 0.368699998 & 0.5586674 & -0.298150003 & 0.2594000 & 0.28309998 & 0.09540004 & ⋯ & 0.9597 & 1.8933 & 1.1444 & 0.9759 & -0.1300 & -0.5763 & -0.3481 & -1.0736 & -0.0896 & 1.2923\\\\\n", "\t55223 & -0.215350002 & 4.3713 & 1.97140002 & 0.29425001 & 1.258400083 & 0.8483824 & 0.505299985 & 0.4320000 & -0.73879999 & -1.00734997 & ⋯ & -0.7425 & 1.5926 & 0.3204 & 0.3486 & -1.2565 & -0.0055 & -0.3076 & -0.5895 & -0.6759 & 1.1372\\\\\n", "\t80022 & -0.499350011 & 3.3540 & 2.46420002 & 0.21785000 & -0.007000007 & 1.1016043 & 0.208849996 & -0.3577000 & -0.80614996 & 0.93999994 & ⋯ & 1.0909 & 0.1379 & 0.6538 & 0.9385 & -0.8598 & -0.1190 & -1.1109 & 0.0832 & -0.2971 & 0.8936\\\\\n", "\t55589 & 0.989849985 & -1.7614 & -0.52405000 & -0.53944999 & 2.766950130 & -1.4092908 & 0.037900001 & 0.5296500 & 0.20385003 & -0.57599998 & ⋯ & -1.7398 & 1.1566 & -0.5645 & 1.4264 & 1.8400 & -0.1273 & 1.2060 & 0.2184 & 1.3779 & -0.5626\\\\\n", "\t376267 & -0.697149992 & 1.8690 & 0.45809996 & -0.03180003 & 1.338700056 & -0.2823215 & -0.157900006 & 1.0916001 & -0.20415001 & -0.42180002 & ⋯ & 0.1199 & 1.2685 & 0.9052 & 0.0267 & 0.0809 & -1.1636 & 0.2976 & 1.9446 & -0.9014 & 1.8036\\\\\n", "\t84820 & -0.152749985 & 1.8001 & 1.37894988 & 0.01440001 & 1.192999959 & 1.6359860 & -0.251900017 & 1.5041499 & -0.12639999 & -0.49724999 & ⋯ & 1.1424 & -0.0597 & 0.7671 & 0.5935 & -0.5742 & -1.0844 & -0.5707 & 2.0601 & -0.2694 & 1.1255\\\\\n", "\t2931 & -0.489800006 & 4.3996 & 2.27640009 & 0.27145001 & -0.035150021 & 0.5720488 & -0.576700032 & 0.1173000 & -0.68005002 & 0.33640003 & ⋯ & 0.2727 & 0.5013 & 0.8471 & 0.2688 & 0.7681 & -0.5762 & -0.8154 & -0.0992 & -0.7370 & 1.7226\\\\\n", "\t63876 & -0.252000004 & 2.4605 & 1.21990001 & -0.08165000 & 1.008049965 & 0.7371939 & -0.005400002 & 0.2307501 & -0.44770002 & -0.46705002 & ⋯ & -0.7579 & -0.6265 & 0.8404 & -0.2692 & 0.8911 & -0.2046 & -0.8071 & -0.1506 & -1.6715 & 0.9172\\\\\n", "\t51275 & -0.829549968 & 2.4557 & 2.40814996 & 0.42320001 & -0.335050017 & -0.9146695 & 0.963299990 & 1.4400499 & 0.39770001 & 0.27579999 & ⋯ & 0.3883 & 0.6793 & 0.3237 & -0.4276 & 0.7665 & 0.5685 & -1.0498 & 1.5715 & -1.7042 & -0.0870\\\\\n", "\t158747 & -0.933599949 & 2.2661 & 2.48624992 & 1.50850010 & -1.788749933 & -0.1306736 & -0.646350026 & -1.1307499 & 0.18900004 & 1.36570001 & ⋯ & 2.4502 & 1.9125 & 0.2526 & 0.5455 & 0.1402 & -0.9180 & -1.9362 & 1.3076 & -0.5795 & 0.3890\\\\\n", "\t283232 & -0.549999952 & 1.0838 & 0.41525000 & -0.09474999 & 1.855700016 & -0.2727659 & -0.094699994 & 1.7906501 & -0.75310004 & 0.58985001 & ⋯ & 0.3257 & 1.1194 & 0.5754 & -0.4345 & -3.3375 & 0.5196 & -1.5637 & 1.1416 & 0.2517 & -0.1119\\\\\n", "\t25960 & 0.060000002 & 1.8776 & 0.34240001 & -0.22815000 & 1.623250008 & -0.5708635 & 0.072649986 & 0.1602500 & 0.26474997 & 0.05900000 & ⋯ & 0.8320 & -0.3680 & 0.6608 & -0.2463 & -2.4105 & 0.1107 & -0.2676 & 0.6119 & 1.1775 & 0.9155\\\\\n", "\t6376 & -0.391449988 & 2.0942 & 1.54129994 & 0.29714999 & -0.322299987 & 0.6695740 & 0.684000015 & -0.2364000 & -0.22969997 & -1.19679999 & ⋯ & 1.1901 & -0.0144 & 1.5630 & 0.3335 & 1.0411 & -1.1291 & 0.6466 & 1.4029 & -1.0273 & 0.0192\\\\\n", "\t11033 & -0.816999972 & 0.0360 & 1.86659992 & 1.18130004 & -1.078150034 & 2.5671935 & -0.160849988 & 0.1246000 & 1.15509999 & 0.12650001 & ⋯ & 1.2484 & -0.1491 & 0.0777 & 0.3478 & -0.7770 & -0.2837 & -0.0944 & 0.7815 & -0.3094 & 2.2588\\\\\n", "\t54869 & -0.491949975 & 3.9373 & 2.89374995 & 0.08510001 & -1.110100031 & 1.1950539 & -0.178350002 & 1.4240000 & -0.01594999 & 1.36944997 & ⋯ & -0.1743 & 1.0657 & 0.7791 & 1.0932 & -0.5247 & -0.5104 & -0.2863 & -0.5035 & 1.2087 & 2.5072\\\\\n", "\t60 & -0.487500012 & -0.0225 & -0.53219998 & -0.72780001 & -0.636449993 & -0.1309013 & -0.509249985 & -0.4348000 & 0.53165001 & 0.25479999 & ⋯ & -1.4556 & -0.2475 & -0.6307 & -0.2042 & 0.7773 & 0.3077 & 1.8114 & -1.0285 & 0.0535 & -1.3198\\\\\n", "\\end{tabular}\n" ], "text/markdown": [ "\n", "A matrix: 12328 × 45956 of type dbl\n", "\n", "| | BRD-A03772856__CD34__trt_cp | trichostatin-a__CD34__trt_cp | geldanamycin__CD34__trt_cp | KUC107191N__CD34__trt_cp | BRD-A35207501__CD34__trt_cp | iloprost__CD34__trt_cp | BRD-A72498772__CD34__trt_cp | BRD-A72796238__CD34__trt_cp | BRD-A73513677__CD34__trt_cp | BRD-A73558769__CD34__trt_cp | ⋯ | MW-MITF24__MCF7__trt_cp | l-buthionine-sulfoximine__PC3__trt_cp | alpha-tocopherol__PC3__trt_cp | cisplatin__PC3__trt_cp | iniparib__PC3__trt_cp | JMW-MITF1__PC3__trt_cp | bortezomib__PC3__trt_cp | selumetinib__PC3__trt_cp | glutamine__PC3__trt_cp | MW-MITF24__PC3__trt_cp |\n", "|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|\n", "| 5720 | 0.36540002 | -1.9333 | -1.78014994 | -0.61925000 | -0.729250073 | -2.01719809 | 0.18455000 | -1.1793000 | 0.34680000 | 0.10225001 | ⋯ | -2.1606 | -0.2913 | -1.2731 | -0.5659 | 0.4571 | 0.0308 | -0.2913 | -0.9489 | -1.0550 | -1.9929 |\n", "| 466 | 0.69385004 | -4.0653 | -2.45910001 | 0.05739999 | 1.069949985 | -1.52120280 | -0.19575000 | 1.3569000 | 0.32670000 | 0.36719999 | ⋯ | -1.9576 | -0.6859 | 0.5907 | -0.2468 | 0.7582 | 0.4957 | -1.0830 | 0.3153 | 1.3292 | -0.5015 |\n", "| 6009 | 0.55435002 | 0.1850 | 0.22250000 | 0.05124998 | 0.336199999 | -1.32433784 | 0.78560001 | -0.2471000 | 1.50240004 | -0.47415000 | ⋯ | -1.9373 | -0.7577 | -1.8149 | 0.0000 | 0.3941 | -1.6190 | 0.1462 | -2.1747 | -0.2952 | -2.1053 |\n", "| 2309 | -0.31579998 | 2.2660 | 0.67035002 | -0.39039999 | 1.141200066 | 0.91430640 | 0.45165002 | 0.1099000 | -0.58609998 | -1.34329998 | ⋯ | 0.9808 | -0.0848 | -1.5376 | 0.6194 | -0.2978 | 0.5139 | 2.9324 | -0.9933 | -0.0140 | -1.1789 |\n", "| 387 | 0.37180001 | -0.2558 | -2.59875011 | -2.12490010 | 1.495700002 | -3.34633827 | -0.03835000 | -0.9017001 | 1.18655002 | 0.68274999 | ⋯ | -1.5168 | 0.0997 | -0.3862 | 0.1973 | -0.4246 | -0.5682 | 0.6157 | -0.3696 | 0.3436 | -3.2787 |\n", "| 3553 | 0.70824999 | -0.5149 | -0.73619998 | -0.41515002 | 1.960999966 | 0.22129090 | -0.20070001 | 0.8321000 | 2.93820000 | -0.08945002 | ⋯ | 3.2767 | 0.0000 | -0.1367 | -0.6745 | -1.0342 | -1.3800 | -0.9713 | 1.2338 | -1.3174 | -0.6564 |\n", "| 427 | 0.18295000 | -1.6045 | 0.42860001 | 0.30954999 | 1.228850007 | 0.06338993 | 0.44700000 | 0.3969500 | 0.57410002 | -0.11010003 | ⋯ | 0.5427 | -0.5669 | -0.7753 | -0.8029 | 1.6375 | 1.7251 | 1.2290 | 0.0243 | -0.7690 | -0.6058 |\n", "| 5898 | -0.40434998 | 3.5042 | 2.97979999 | -0.84810001 | 1.905500054 | 0.31654096 | -0.01730000 | -0.1905500 | -0.82900000 | -0.52789998 | ⋯ | -0.3057 | 0.1609 | 0.2776 | 0.0750 | -2.8649 | 0.5809 | 1.7948 | -0.0093 | 1.2902 | 0.2903 |\n", "| 23365 | 0.49500000 | 0.4630 | 0.48894998 | -0.25070000 | 0.521200001 | -0.62915254 | -0.67110002 | -0.7869500 | 0.49564999 | 1.38380003 | ⋯ | -0.7719 | -0.3665 | 0.7769 | 0.3405 | -0.6687 | 0.4276 | -2.5250 | 0.0963 | 0.0482 | 0.0963 |\n", "| 6657 | -0.58120000 | 2.3181 | 1.18390000 | 0.32394999 | 0.963199973 | 1.12940836 | -0.09670001 | 1.5269001 | -0.28994998 | -0.26674998 | ⋯ | 2.3400 | 0.8720 | 1.4368 | 0.5604 | -1.3073 | -0.8898 | -0.4415 | 0.7747 | -0.3321 | 2.5004 |\n", "| 5054 | -0.25055000 | -0.2075 | -0.43175000 | 0.16700003 | 1.369400024 | 1.35352969 | -0.11345001 | 0.5116500 | -0.07969996 | -0.21934998 | ⋯ | 0.6593 | 0.2299 | 0.5751 | 0.2370 | 0.4596 | 0.3050 | -1.6550 | 0.0137 | 0.4267 | 0.6745 |\n", "| 3108 | -0.06060000 | -1.8116 | -1.61284995 | -0.08275000 | -0.534399986 | -0.13355637 | -0.01085000 | -1.5620000 | 0.59775001 | 0.97039998 | ⋯ | 0.6745 | 0.3049 | -0.5842 | -0.3346 | 1.3939 | -0.4618 | 0.4915 | 0.0590 | 0.1180 | 1.7550 |\n", "| 1950 | 0.34324998 | -0.3875 | 1.33039999 | 0.69085002 | -1.051300049 | 3.66408134 | 0.38674998 | 2.6680501 | -0.73095000 | -0.51055002 | ⋯ | 0.8943 | 0.2505 | 1.1675 | -0.0811 | -0.4084 | -0.6610 | -0.0670 | 1.3110 | -1.1154 | 2.5754 |\n", "| 351 | -0.75015002 | 0.0000 | 1.67859995 | 0.01835000 | 0.958649993 | 0.42959470 | 0.31160000 | 0.9131501 | 0.33724999 | -0.51849997 | ⋯ | 1.2067 | 0.8746 | -1.4754 | 0.3245 | 1.2609 | 0.4734 | 1.3987 | -0.1130 | -0.8090 | 0.3988 |\n", "| 4846 | 0.44309998 | 2.6904 | 1.82799995 | 0.63379997 | 0.361950010 | 1.81054175 | 0.38900000 | 3.5537500 | -0.76929998 | -0.95864999 | ⋯ | -1.2723 | 1.0611 | 0.0000 | 0.8742 | 0.5819 | 0.4788 | 1.4877 | -0.3579 | -0.6335 | -0.7591 |\n", "| 1452 | 0.05585000 | -0.3123 | 0.57295001 | -0.44580001 | 0.636549950 | -0.72561306 | -3.03379989 | -0.7344500 | 0.70099998 | 0.10130000 | ⋯ | -1.9790 | 0.3489 | -0.7107 | -1.8170 | 0.3777 | -1.1747 | 1.5557 | -0.0845 | -1.1233 | -1.5332 |\n", "| 4776 | -0.92770004 | 0.6834 | 2.35645008 | 1.05629992 | -0.044949993 | 0.66652113 | -0.03335000 | 2.2428999 | 0.25165001 | 0.55704999 | ⋯ | 3.3373 | 0.5311 | 1.3320 | 0.3057 | -0.9554 | -0.9277 | -1.0772 | 0.3361 | -0.9042 | 3.1649 |\n", "| 6908 | 0.20305002 | 1.6617 | -0.03129999 | 0.27434999 | 0.650349975 | -0.19393554 | -0.39605001 | 0.2097500 | 0.72994995 | 0.24660000 | ⋯ | -2.6201 | 0.3546 | -0.8340 | 0.1707 | 0.7447 | 0.8058 | -0.3623 | -1.9207 | 0.1919 | -1.5016 |\n", "| 672 | 0.32475001 | -4.0764 | -3.70605016 | 0.08045001 | -0.453600019 | -0.40477309 | 0.57854998 | 0.4603500 | -0.35640001 | -0.57574999 | ⋯ | -0.0347 | 0.5236 | -1.3417 | 0.5860 | 0.7067 | -0.6479 | 2.8601 | 2.8988 | -0.1277 | 0.1526 |\n", "| 5710 | 0.63964999 | 0.2391 | 0.23535000 | -1.49465001 | -1.058050036 | -1.23082113 | 0.30835003 | -1.5607500 | -1.05330002 | 1.03775001 | ⋯ | -0.8548 | 0.0244 | -0.4195 | 0.8007 | 0.8163 | -0.6469 | 2.6838 | -0.4705 | -1.5872 | -1.9920 |\n", "| 2115 | -0.46765000 | 2.5311 | 0.92490000 | 0.27040002 | -0.008450001 | 1.54992425 | 0.02805001 | 0.9752501 | -0.80159998 | -0.07155001 | ⋯ | 1.7185 | 0.0407 | 0.8669 | -2.4175 | -1.3462 | 0.1283 | -0.6444 | 0.9818 | -0.0399 | 0.1548 |\n", "| 7015 | -0.62810004 | 2.9025 | 1.92159998 | 0.28770000 | 0.454999983 | 1.53958702 | 0.56625003 | 0.9501500 | -0.29589999 | -0.62774998 | ⋯ | 1.2487 | 0.5907 | 0.8714 | 0.6421 | -0.9362 | -0.4963 | -0.4187 | 0.6203 | -0.1979 | 3.4552 |\n", "| 8726 | 0.46415001 | -3.4828 | -2.23075008 | 0.99154997 | 0.230650008 | 0.27298701 | 0.02245000 | -0.7093000 | -0.07795000 | -0.39450002 | ⋯ | -1.6259 | -0.1834 | -0.9279 | -5.2129 | -0.4035 | 0.8041 | 1.4548 | 1.4854 | 1.7362 | 1.4854 |\n", "| 2185 | -0.59829998 | -2.5377 | 4.76999998 | -0.27070001 | -2.783349991 | 1.25042439 | -0.24249998 | -3.3810499 | -0.36440000 | 0.63944995 | ⋯ | 2.5788 | 1.2502 | 1.2122 | 0.2189 | -0.3260 | -0.4259 | -0.4624 | 1.4268 | -1.4473 | 2.8440 |\n", "| 3315 | -0.22889999 | -1.1686 | 1.73409986 | 0.21175002 | -3.493849993 | 0.21799627 | -0.32495001 | -2.3188000 | -0.12619999 | -0.08780000 | ⋯ | 0.0000 | -0.5599 | -0.7747 | 0.9959 | -0.9554 | -0.6129 | 2.3237 | -0.7365 | -0.4083 | -3.0874 |\n", "| 5289 | 0.04359999 | 3.6465 | 3.03125000 | 0.90630001 | 0.187049985 | 3.19396544 | -0.23465000 | 1.0276000 | -0.56045002 | -0.05330001 | ⋯ | 0.8281 | -0.9206 | 0.6822 | -0.9480 | -0.2322 | -1.1048 | 0.8300 | 0.4654 | -0.5206 | 0.6745 |\n", "| 868 | 0.10220000 | 0.8592 | 1.81244993 | -0.25509998 | 0.549250007 | -0.19470868 | -0.59965003 | 0.4235500 | -0.48370001 | -1.28314996 | ⋯ | 0.1421 | 0.7650 | 0.4446 | 0.2584 | 0.1067 | 0.5922 | 1.3067 | -0.8527 | -0.3135 | 0.8328 |\n", "| 1677 | -0.20805000 | 0.7930 | 1.97329998 | 0.54895002 | -0.111049995 | 1.75220299 | -0.52419996 | 0.9599000 | -0.76335001 | -0.10170000 | ⋯ | 0.3969 | 0.9042 | 0.0418 | 0.4508 | 0.3277 | 4.0569 | -3.5420 | -0.8606 | -0.0633 | 2.4948 |\n", "| 7043 | -0.27850002 | 2.4205 | 0.82440001 | -0.50725001 | 1.212399960 | -0.33966029 | -0.46219999 | 0.2445500 | -0.48930001 | 0.63644999 | ⋯ | 0.0147 | 1.1314 | 1.5184 | 1.1396 | -0.7535 | -0.1550 | -0.5552 | 0.9483 | 0.5121 | 0.9929 |\n", "| 5613 | -0.66865003 | 0.5340 | 3.83539987 | 0.60944998 | -1.195199966 | 1.74077058 | -0.14775001 | -0.1435000 | 0.24705002 | 0.45889997 | ⋯ | 0.0717 | 0.5023 | 0.3477 | -2.3664 | -0.3586 | -0.3032 | -0.4723 | -0.3586 | -0.7751 | 1.1149 |\n", "| ⋮ | ⋮ | ⋮ | ⋮ | ⋮ | ⋮ | ⋮ | ⋮ | ⋮ | ⋮ | ⋮ | ⋱ | ⋮ | ⋮ | ⋮ | ⋮ | ⋮ | ⋮ | ⋮ | ⋮ | ⋮ | ⋮ |\n", "| 54552 | -0.547550023 | 0.5666 | 0.74390000 | -0.32515001 | 1.286950111 | 0.6714719 | -0.372799993 | 1.4985501 | -0.04715000 | -0.15339999 | ⋯ | 1.8504 | -0.2516 | 1.3114 | -0.1993 | -1.4090 | -0.4407 | -2.0924 | 0.6877 | 0.7649 | -0.1186 |\n", "| 54920 | -0.190850005 | 2.6847 | 0.61905003 | 0.51645005 | -0.408650011 | 1.7125645 | -0.076900005 | -0.5360000 | -1.17120004 | 0.30594999 | ⋯ | 0.4583 | 0.8514 | 0.3027 | 1.4400 | -1.0779 | -0.6745 | 0.0638 | 0.4723 | 0.0850 | 0.7503 |\n", "| 11178 | -0.007799983 | 1.4589 | 0.63424999 | -0.62494999 | 0.307300001 | -0.3424515 | -0.897199988 | 0.0240500 | -0.16354999 | 0.00515002 | ⋯ | -1.7519 | 0.3908 | -1.0155 | -0.2487 | -0.6887 | -0.6171 | -0.5462 | -0.1172 | -1.4105 | 0.1631 |\n", "| 93643 | -0.781599998 | 0.9777 | 2.61190009 | 0.64004999 | 0.713050008 | 0.9237132 | 0.206200004 | 0.4028500 | 0.18150002 | -1.33759999 | ⋯ | 2.1395 | -0.4617 | 1.2257 | 0.0263 | -1.3893 | -1.9883 | 0.7824 | 0.2161 | -0.5916 | 2.0450 |\n", "| 112869 | -0.174050003 | 0.1336 | -0.16070001 | 0.83440006 | 0.434750021 | 0.5052795 | 0.133000001 | -0.2637000 | -0.80325001 | -0.37760001 | ⋯ | 2.3786 | 1.1703 | 1.1386 | 0.7210 | -0.1182 | -0.0510 | -1.0956 | 0.8456 | -0.5989 | 1.1402 |\n", "| 51147 | -0.131500006 | 2.5702 | 2.79585004 | 0.60960001 | 1.184949994 | 0.1883786 | -0.194200009 | 0.8002999 | -0.16949999 | 0.07554999 | ⋯ | 1.9107 | 1.5612 | 0.3518 | 1.2840 | -1.4728 | -0.3504 | 0.0130 | 0.4459 | -0.4840 | 0.9162 |\n", "| 196403 | -0.179949999 | 3.3629 | 2.99699998 | 1.06465006 | 0.325349987 | 1.2875153 | -0.328400016 | 1.8518502 | -0.13325000 | -1.07975006 | ⋯ | 1.4798 | 0.1850 | 1.3844 | 0.3240 | -0.4564 | 0.3414 | 0.1307 | 0.2026 | -1.4586 | 1.7090 |\n", "| 389677 | -0.299800009 | -1.7546 | 1.62085009 | 0.17885001 | 0.346049994 | 2.1395676 | 0.425999999 | 0.2757500 | -0.60355002 | -0.66229999 | ⋯ | 0.6175 | -0.6872 | 1.1080 | -0.3949 | -0.7650 | 0.6032 | -0.5789 | 0.8575 | 1.2912 | -0.5854 |\n", "| 1296 | -0.568499982 | 4.0283 | 1.80404997 | 0.68540001 | 1.193750024 | -0.3998278 | -0.204600006 | 2.2550499 | 0.10470000 | 0.11945000 | ⋯ | 0.9755 | 0.6923 | -0.1845 | 0.1797 | -0.0929 | 0.0885 | 0.6156 | 0.2872 | -0.6606 | 0.7912 |\n", "| 85352 | -0.582249999 | 2.8892 | 2.65304995 | 0.62145001 | 0.426599979 | 1.1645755 | 0.086000010 | 1.2165500 | 0.69494998 | -0.19315001 | ⋯ | -0.0009 | 3.7638 | 1.6589 | 0.1591 | -0.6720 | -1.0518 | -1.5408 | -0.1605 | 0.1139 | 2.4243 |\n", "| 57610 | 0.498400003 | 5.1220 | 2.16345000 | 0.01574999 | 0.200550005 | 0.1731201 | -0.926600039 | 0.0807500 | -0.57225001 | 0.07119998 | ⋯ | 1.5447 | -0.0599 | 1.6722 | 0.2858 | 1.6272 | -0.8244 | 0.9907 | 0.4710 | 0.1368 | 1.4276 |\n", "| 27147 | -0.202250004 | 2.5838 | 1.67175007 | -0.22469999 | 1.058600068 | 0.6260329 | -0.410300016 | 0.1346500 | -0.54540002 | -0.01105000 | ⋯ | 1.3721 | -0.4534 | -0.3415 | 0.3251 | -1.3887 | 0.4315 | 0.1750 | -0.6396 | -1.0847 | 1.3937 |\n", "| 79591 | 1.026950002 | 2.7480 | -0.06799999 | 0.64854997 | 1.501299977 | 1.2647009 | 0.523100019 | -0.0559500 | 0.24710000 | 0.37870002 | ⋯ | 2.1479 | 1.1361 | -0.7604 | 1.6378 | -0.0226 | 0.0510 | -0.0003 | -0.4592 | 0.8158 | 1.6554 |\n", "| 92595 | 0.652800024 | -0.7214 | 0.21370000 | 0.66485000 | 1.284350038 | 0.5647974 | 0.559400022 | 1.5563999 | 0.02030000 | -0.36090001 | ⋯ | 0.3339 | 1.3473 | 0.0010 | 0.0615 | -0.2524 | 0.0479 | -0.3532 | -0.2950 | 0.0858 | 0.1184 |\n", "| 51063 | 0.343500018 | -0.8015 | 0.33515000 | 1.91869998 | 0.368699998 | 0.5586674 | -0.298150003 | 0.2594000 | 0.28309998 | 0.09540004 | ⋯ | 0.9597 | 1.8933 | 1.1444 | 0.9759 | -0.1300 | -0.5763 | -0.3481 | -1.0736 | -0.0896 | 1.2923 |\n", "| 55223 | -0.215350002 | 4.3713 | 1.97140002 | 0.29425001 | 1.258400083 | 0.8483824 | 0.505299985 | 0.4320000 | -0.73879999 | -1.00734997 | ⋯ | -0.7425 | 1.5926 | 0.3204 | 0.3486 | -1.2565 | -0.0055 | -0.3076 | -0.5895 | -0.6759 | 1.1372 |\n", "| 80022 | -0.499350011 | 3.3540 | 2.46420002 | 0.21785000 | -0.007000007 | 1.1016043 | 0.208849996 | -0.3577000 | -0.80614996 | 0.93999994 | ⋯ | 1.0909 | 0.1379 | 0.6538 | 0.9385 | -0.8598 | -0.1190 | -1.1109 | 0.0832 | -0.2971 | 0.8936 |\n", "| 55589 | 0.989849985 | -1.7614 | -0.52405000 | -0.53944999 | 2.766950130 | -1.4092908 | 0.037900001 | 0.5296500 | 0.20385003 | -0.57599998 | ⋯ | -1.7398 | 1.1566 | -0.5645 | 1.4264 | 1.8400 | -0.1273 | 1.2060 | 0.2184 | 1.3779 | -0.5626 |\n", "| 376267 | -0.697149992 | 1.8690 | 0.45809996 | -0.03180003 | 1.338700056 | -0.2823215 | -0.157900006 | 1.0916001 | -0.20415001 | -0.42180002 | ⋯ | 0.1199 | 1.2685 | 0.9052 | 0.0267 | 0.0809 | -1.1636 | 0.2976 | 1.9446 | -0.9014 | 1.8036 |\n", "| 84820 | -0.152749985 | 1.8001 | 1.37894988 | 0.01440001 | 1.192999959 | 1.6359860 | -0.251900017 | 1.5041499 | -0.12639999 | -0.49724999 | ⋯ | 1.1424 | -0.0597 | 0.7671 | 0.5935 | -0.5742 | -1.0844 | -0.5707 | 2.0601 | -0.2694 | 1.1255 |\n", "| 2931 | -0.489800006 | 4.3996 | 2.27640009 | 0.27145001 | -0.035150021 | 0.5720488 | -0.576700032 | 0.1173000 | -0.68005002 | 0.33640003 | ⋯ | 0.2727 | 0.5013 | 0.8471 | 0.2688 | 0.7681 | -0.5762 | -0.8154 | -0.0992 | -0.7370 | 1.7226 |\n", "| 63876 | -0.252000004 | 2.4605 | 1.21990001 | -0.08165000 | 1.008049965 | 0.7371939 | -0.005400002 | 0.2307501 | -0.44770002 | -0.46705002 | ⋯ | -0.7579 | -0.6265 | 0.8404 | -0.2692 | 0.8911 | -0.2046 | -0.8071 | -0.1506 | -1.6715 | 0.9172 |\n", "| 51275 | -0.829549968 | 2.4557 | 2.40814996 | 0.42320001 | -0.335050017 | -0.9146695 | 0.963299990 | 1.4400499 | 0.39770001 | 0.27579999 | ⋯ | 0.3883 | 0.6793 | 0.3237 | -0.4276 | 0.7665 | 0.5685 | -1.0498 | 1.5715 | -1.7042 | -0.0870 |\n", "| 158747 | -0.933599949 | 2.2661 | 2.48624992 | 1.50850010 | -1.788749933 | -0.1306736 | -0.646350026 | -1.1307499 | 0.18900004 | 1.36570001 | ⋯ | 2.4502 | 1.9125 | 0.2526 | 0.5455 | 0.1402 | -0.9180 | -1.9362 | 1.3076 | -0.5795 | 0.3890 |\n", "| 283232 | -0.549999952 | 1.0838 | 0.41525000 | -0.09474999 | 1.855700016 | -0.2727659 | -0.094699994 | 1.7906501 | -0.75310004 | 0.58985001 | ⋯ | 0.3257 | 1.1194 | 0.5754 | -0.4345 | -3.3375 | 0.5196 | -1.5637 | 1.1416 | 0.2517 | -0.1119 |\n", "| 25960 | 0.060000002 | 1.8776 | 0.34240001 | -0.22815000 | 1.623250008 | -0.5708635 | 0.072649986 | 0.1602500 | 0.26474997 | 0.05900000 | ⋯ | 0.8320 | -0.3680 | 0.6608 | -0.2463 | -2.4105 | 0.1107 | -0.2676 | 0.6119 | 1.1775 | 0.9155 |\n", "| 6376 | -0.391449988 | 2.0942 | 1.54129994 | 0.29714999 | -0.322299987 | 0.6695740 | 0.684000015 | -0.2364000 | -0.22969997 | -1.19679999 | ⋯ | 1.1901 | -0.0144 | 1.5630 | 0.3335 | 1.0411 | -1.1291 | 0.6466 | 1.4029 | -1.0273 | 0.0192 |\n", "| 11033 | -0.816999972 | 0.0360 | 1.86659992 | 1.18130004 | -1.078150034 | 2.5671935 | -0.160849988 | 0.1246000 | 1.15509999 | 0.12650001 | ⋯ | 1.2484 | -0.1491 | 0.0777 | 0.3478 | -0.7770 | -0.2837 | -0.0944 | 0.7815 | -0.3094 | 2.2588 |\n", "| 54869 | -0.491949975 | 3.9373 | 2.89374995 | 0.08510001 | -1.110100031 | 1.1950539 | -0.178350002 | 1.4240000 | -0.01594999 | 1.36944997 | ⋯ | -0.1743 | 1.0657 | 0.7791 | 1.0932 | -0.5247 | -0.5104 | -0.2863 | -0.5035 | 1.2087 | 2.5072 |\n", "| 60 | -0.487500012 | -0.0225 | -0.53219998 | -0.72780001 | -0.636449993 | -0.1309013 | -0.509249985 | -0.4348000 | 0.53165001 | 0.25479999 | ⋯ | -1.4556 | -0.2475 | -0.6307 | -0.2042 | 0.7773 | 0.3077 | 1.8114 | -1.0285 | 0.0535 | -1.3198 |\n", "\n" ], "text/plain": [ " BRD-A03772856__CD34__trt_cp trichostatin-a__CD34__trt_cp\n", "5720 0.36540002 -1.9333 \n", "466 0.69385004 -4.0653 \n", "6009 0.55435002 0.1850 \n", "2309 -0.31579998 2.2660 \n", "387 0.37180001 -0.2558 \n", "3553 0.70824999 -0.5149 \n", "427 0.18295000 -1.6045 \n", "5898 -0.40434998 3.5042 \n", "23365 0.49500000 0.4630 \n", "6657 -0.58120000 2.3181 \n", "5054 -0.25055000 -0.2075 \n", "3108 -0.06060000 -1.8116 \n", "1950 0.34324998 -0.3875 \n", "351 -0.75015002 0.0000 \n", "4846 0.44309998 2.6904 \n", "1452 0.05585000 -0.3123 \n", "4776 -0.92770004 0.6834 \n", "6908 0.20305002 1.6617 \n", "672 0.32475001 -4.0764 \n", "5710 0.63964999 0.2391 \n", "2115 -0.46765000 2.5311 \n", "7015 -0.62810004 2.9025 \n", "8726 0.46415001 -3.4828 \n", "2185 -0.59829998 -2.5377 \n", "3315 -0.22889999 -1.1686 \n", "5289 0.04359999 3.6465 \n", "868 0.10220000 0.8592 \n", "1677 -0.20805000 0.7930 \n", "7043 -0.27850002 2.4205 \n", "5613 -0.66865003 0.5340 \n", "⋮ ⋮ ⋮ \n", "54552 -0.547550023 0.5666 \n", "54920 -0.190850005 2.6847 \n", "11178 -0.007799983 1.4589 \n", "93643 -0.781599998 0.9777 \n", "112869 -0.174050003 0.1336 \n", "51147 -0.131500006 2.5702 \n", "196403 -0.179949999 3.3629 \n", "389677 -0.299800009 -1.7546 \n", "1296 -0.568499982 4.0283 \n", "85352 -0.582249999 2.8892 \n", "57610 0.498400003 5.1220 \n", "27147 -0.202250004 2.5838 \n", "79591 1.026950002 2.7480 \n", "92595 0.652800024 -0.7214 \n", "51063 0.343500018 -0.8015 \n", "55223 -0.215350002 4.3713 \n", "80022 -0.499350011 3.3540 \n", "55589 0.989849985 -1.7614 \n", "376267 -0.697149992 1.8690 \n", "84820 -0.152749985 1.8001 \n", "2931 -0.489800006 4.3996 \n", "63876 -0.252000004 2.4605 \n", "51275 -0.829549968 2.4557 \n", "158747 -0.933599949 2.2661 \n", "283232 -0.549999952 1.0838 \n", "25960 0.060000002 1.8776 \n", "6376 -0.391449988 2.0942 \n", "11033 -0.816999972 0.0360 \n", "54869 -0.491949975 3.9373 \n", "60 -0.487500012 -0.0225 \n", " geldanamycin__CD34__trt_cp KUC107191N__CD34__trt_cp\n", "5720 -1.78014994 -0.61925000 \n", "466 -2.45910001 0.05739999 \n", "6009 0.22250000 0.05124998 \n", "2309 0.67035002 -0.39039999 \n", "387 -2.59875011 -2.12490010 \n", "3553 -0.73619998 -0.41515002 \n", "427 0.42860001 0.30954999 \n", "5898 2.97979999 -0.84810001 \n", "23365 0.48894998 -0.25070000 \n", "6657 1.18390000 0.32394999 \n", "5054 -0.43175000 0.16700003 \n", "3108 -1.61284995 -0.08275000 \n", "1950 1.33039999 0.69085002 \n", "351 1.67859995 0.01835000 \n", "4846 1.82799995 0.63379997 \n", "1452 0.57295001 -0.44580001 \n", "4776 2.35645008 1.05629992 \n", "6908 -0.03129999 0.27434999 \n", "672 -3.70605016 0.08045001 \n", "5710 0.23535000 -1.49465001 \n", "2115 0.92490000 0.27040002 \n", "7015 1.92159998 0.28770000 \n", "8726 -2.23075008 0.99154997 \n", "2185 4.76999998 -0.27070001 \n", "3315 1.73409986 0.21175002 \n", "5289 3.03125000 0.90630001 \n", "868 1.81244993 -0.25509998 \n", "1677 1.97329998 0.54895002 \n", "7043 0.82440001 -0.50725001 \n", "5613 3.83539987 0.60944998 \n", "⋮ ⋮ ⋮ \n", "54552 0.74390000 -0.32515001 \n", "54920 0.61905003 0.51645005 \n", "11178 0.63424999 -0.62494999 \n", "93643 2.61190009 0.64004999 \n", "112869 -0.16070001 0.83440006 \n", "51147 2.79585004 0.60960001 \n", "196403 2.99699998 1.06465006 \n", "389677 1.62085009 0.17885001 \n", "1296 1.80404997 0.68540001 \n", "85352 2.65304995 0.62145001 \n", "57610 2.16345000 0.01574999 \n", "27147 1.67175007 -0.22469999 \n", "79591 -0.06799999 0.64854997 \n", "92595 0.21370000 0.66485000 \n", "51063 0.33515000 1.91869998 \n", "55223 1.97140002 0.29425001 \n", "80022 2.46420002 0.21785000 \n", "55589 -0.52405000 -0.53944999 \n", "376267 0.45809996 -0.03180003 \n", "84820 1.37894988 0.01440001 \n", "2931 2.27640009 0.27145001 \n", "63876 1.21990001 -0.08165000 \n", "51275 2.40814996 0.42320001 \n", "158747 2.48624992 1.50850010 \n", "283232 0.41525000 -0.09474999 \n", "25960 0.34240001 -0.22815000 \n", "6376 1.54129994 0.29714999 \n", "11033 1.86659992 1.18130004 \n", "54869 2.89374995 0.08510001 \n", "60 -0.53219998 -0.72780001 \n", " BRD-A35207501__CD34__trt_cp iloprost__CD34__trt_cp\n", "5720 -0.729250073 -2.01719809 \n", "466 1.069949985 -1.52120280 \n", "6009 0.336199999 -1.32433784 \n", "2309 1.141200066 0.91430640 \n", "387 1.495700002 -3.34633827 \n", "3553 1.960999966 0.22129090 \n", "427 1.228850007 0.06338993 \n", "5898 1.905500054 0.31654096 \n", "23365 0.521200001 -0.62915254 \n", "6657 0.963199973 1.12940836 \n", "5054 1.369400024 1.35352969 \n", "3108 -0.534399986 -0.13355637 \n", "1950 -1.051300049 3.66408134 \n", "351 0.958649993 0.42959470 \n", "4846 0.361950010 1.81054175 \n", "1452 0.636549950 -0.72561306 \n", "4776 -0.044949993 0.66652113 \n", "6908 0.650349975 -0.19393554 \n", "672 -0.453600019 -0.40477309 \n", "5710 -1.058050036 -1.23082113 \n", "2115 -0.008450001 1.54992425 \n", "7015 0.454999983 1.53958702 \n", "8726 0.230650008 0.27298701 \n", "2185 -2.783349991 1.25042439 \n", "3315 -3.493849993 0.21799627 \n", "5289 0.187049985 3.19396544 \n", "868 0.549250007 -0.19470868 \n", "1677 -0.111049995 1.75220299 \n", "7043 1.212399960 -0.33966029 \n", "5613 -1.195199966 1.74077058 \n", "⋮ ⋮ ⋮ \n", "54552 1.286950111 0.6714719 \n", "54920 -0.408650011 1.7125645 \n", "11178 0.307300001 -0.3424515 \n", "93643 0.713050008 0.9237132 \n", "112869 0.434750021 0.5052795 \n", "51147 1.184949994 0.1883786 \n", "196403 0.325349987 1.2875153 \n", "389677 0.346049994 2.1395676 \n", "1296 1.193750024 -0.3998278 \n", "85352 0.426599979 1.1645755 \n", "57610 0.200550005 0.1731201 \n", "27147 1.058600068 0.6260329 \n", "79591 1.501299977 1.2647009 \n", "92595 1.284350038 0.5647974 \n", "51063 0.368699998 0.5586674 \n", "55223 1.258400083 0.8483824 \n", "80022 -0.007000007 1.1016043 \n", "55589 2.766950130 -1.4092908 \n", "376267 1.338700056 -0.2823215 \n", "84820 1.192999959 1.6359860 \n", "2931 -0.035150021 0.5720488 \n", "63876 1.008049965 0.7371939 \n", "51275 -0.335050017 -0.9146695 \n", "158747 -1.788749933 -0.1306736 \n", "283232 1.855700016 -0.2727659 \n", "25960 1.623250008 -0.5708635 \n", "6376 -0.322299987 0.6695740 \n", "11033 -1.078150034 2.5671935 \n", "54869 -1.110100031 1.1950539 \n", "60 -0.636449993 -0.1309013 \n", " BRD-A72498772__CD34__trt_cp BRD-A72796238__CD34__trt_cp\n", "5720 0.18455000 -1.1793000 \n", "466 -0.19575000 1.3569000 \n", "6009 0.78560001 -0.2471000 \n", "2309 0.45165002 0.1099000 \n", "387 -0.03835000 -0.9017001 \n", "3553 -0.20070001 0.8321000 \n", "427 0.44700000 0.3969500 \n", "5898 -0.01730000 -0.1905500 \n", "23365 -0.67110002 -0.7869500 \n", "6657 -0.09670001 1.5269001 \n", "5054 -0.11345001 0.5116500 \n", "3108 -0.01085000 -1.5620000 \n", "1950 0.38674998 2.6680501 \n", "351 0.31160000 0.9131501 \n", "4846 0.38900000 3.5537500 \n", "1452 -3.03379989 -0.7344500 \n", "4776 -0.03335000 2.2428999 \n", "6908 -0.39605001 0.2097500 \n", "672 0.57854998 0.4603500 \n", "5710 0.30835003 -1.5607500 \n", "2115 0.02805001 0.9752501 \n", "7015 0.56625003 0.9501500 \n", "8726 0.02245000 -0.7093000 \n", "2185 -0.24249998 -3.3810499 \n", "3315 -0.32495001 -2.3188000 \n", "5289 -0.23465000 1.0276000 \n", "868 -0.59965003 0.4235500 \n", "1677 -0.52419996 0.9599000 \n", "7043 -0.46219999 0.2445500 \n", "5613 -0.14775001 -0.1435000 \n", "⋮ ⋮ ⋮ \n", "54552 -0.372799993 1.4985501 \n", "54920 -0.076900005 -0.5360000 \n", "11178 -0.897199988 0.0240500 \n", "93643 0.206200004 0.4028500 \n", "112869 0.133000001 -0.2637000 \n", "51147 -0.194200009 0.8002999 \n", "196403 -0.328400016 1.8518502 \n", "389677 0.425999999 0.2757500 \n", "1296 -0.204600006 2.2550499 \n", "85352 0.086000010 1.2165500 \n", "57610 -0.926600039 0.0807500 \n", "27147 -0.410300016 0.1346500 \n", "79591 0.523100019 -0.0559500 \n", "92595 0.559400022 1.5563999 \n", "51063 -0.298150003 0.2594000 \n", "55223 0.505299985 0.4320000 \n", "80022 0.208849996 -0.3577000 \n", "55589 0.037900001 0.5296500 \n", "376267 -0.157900006 1.0916001 \n", "84820 -0.251900017 1.5041499 \n", "2931 -0.576700032 0.1173000 \n", "63876 -0.005400002 0.2307501 \n", "51275 0.963299990 1.4400499 \n", "158747 -0.646350026 -1.1307499 \n", "283232 -0.094699994 1.7906501 \n", "25960 0.072649986 0.1602500 \n", "6376 0.684000015 -0.2364000 \n", "11033 -0.160849988 0.1246000 \n", "54869 -0.178350002 1.4240000 \n", "60 -0.509249985 -0.4348000 \n", " BRD-A73513677__CD34__trt_cp BRD-A73558769__CD34__trt_cp ⋯\n", "5720 0.34680000 0.10225001 ⋯\n", "466 0.32670000 0.36719999 ⋯\n", "6009 1.50240004 -0.47415000 ⋯\n", "2309 -0.58609998 -1.34329998 ⋯\n", "387 1.18655002 0.68274999 ⋯\n", "3553 2.93820000 -0.08945002 ⋯\n", "427 0.57410002 -0.11010003 ⋯\n", "5898 -0.82900000 -0.52789998 ⋯\n", "23365 0.49564999 1.38380003 ⋯\n", "6657 -0.28994998 -0.26674998 ⋯\n", "5054 -0.07969996 -0.21934998 ⋯\n", "3108 0.59775001 0.97039998 ⋯\n", "1950 -0.73095000 -0.51055002 ⋯\n", "351 0.33724999 -0.51849997 ⋯\n", "4846 -0.76929998 -0.95864999 ⋯\n", "1452 0.70099998 0.10130000 ⋯\n", "4776 0.25165001 0.55704999 ⋯\n", "6908 0.72994995 0.24660000 ⋯\n", "672 -0.35640001 -0.57574999 ⋯\n", "5710 -1.05330002 1.03775001 ⋯\n", "2115 -0.80159998 -0.07155001 ⋯\n", "7015 -0.29589999 -0.62774998 ⋯\n", "8726 -0.07795000 -0.39450002 ⋯\n", "2185 -0.36440000 0.63944995 ⋯\n", "3315 -0.12619999 -0.08780000 ⋯\n", "5289 -0.56045002 -0.05330001 ⋯\n", "868 -0.48370001 -1.28314996 ⋯\n", "1677 -0.76335001 -0.10170000 ⋯\n", "7043 -0.48930001 0.63644999 ⋯\n", "5613 0.24705002 0.45889997 ⋯\n", "⋮ ⋮ ⋮ ⋱\n", "54552 -0.04715000 -0.15339999 ⋯\n", "54920 -1.17120004 0.30594999 ⋯\n", "11178 -0.16354999 0.00515002 ⋯\n", "93643 0.18150002 -1.33759999 ⋯\n", "112869 -0.80325001 -0.37760001 ⋯\n", "51147 -0.16949999 0.07554999 ⋯\n", "196403 -0.13325000 -1.07975006 ⋯\n", "389677 -0.60355002 -0.66229999 ⋯\n", "1296 0.10470000 0.11945000 ⋯\n", "85352 0.69494998 -0.19315001 ⋯\n", "57610 -0.57225001 0.07119998 ⋯\n", "27147 -0.54540002 -0.01105000 ⋯\n", "79591 0.24710000 0.37870002 ⋯\n", "92595 0.02030000 -0.36090001 ⋯\n", "51063 0.28309998 0.09540004 ⋯\n", "55223 -0.73879999 -1.00734997 ⋯\n", "80022 -0.80614996 0.93999994 ⋯\n", "55589 0.20385003 -0.57599998 ⋯\n", "376267 -0.20415001 -0.42180002 ⋯\n", "84820 -0.12639999 -0.49724999 ⋯\n", "2931 -0.68005002 0.33640003 ⋯\n", "63876 -0.44770002 -0.46705002 ⋯\n", "51275 0.39770001 0.27579999 ⋯\n", "158747 0.18900004 1.36570001 ⋯\n", "283232 -0.75310004 0.58985001 ⋯\n", "25960 0.26474997 0.05900000 ⋯\n", "6376 -0.22969997 -1.19679999 ⋯\n", "11033 1.15509999 0.12650001 ⋯\n", "54869 -0.01594999 1.36944997 ⋯\n", "60 0.53165001 0.25479999 ⋯\n", " MW-MITF24__MCF7__trt_cp l-buthionine-sulfoximine__PC3__trt_cp\n", "5720 -2.1606 -0.2913 \n", "466 -1.9576 -0.6859 \n", "6009 -1.9373 -0.7577 \n", "2309 0.9808 -0.0848 \n", "387 -1.5168 0.0997 \n", "3553 3.2767 0.0000 \n", "427 0.5427 -0.5669 \n", "5898 -0.3057 0.1609 \n", "23365 -0.7719 -0.3665 \n", "6657 2.3400 0.8720 \n", "5054 0.6593 0.2299 \n", "3108 0.6745 0.3049 \n", "1950 0.8943 0.2505 \n", "351 1.2067 0.8746 \n", "4846 -1.2723 1.0611 \n", "1452 -1.9790 0.3489 \n", "4776 3.3373 0.5311 \n", "6908 -2.6201 0.3546 \n", "672 -0.0347 0.5236 \n", "5710 -0.8548 0.0244 \n", "2115 1.7185 0.0407 \n", "7015 1.2487 0.5907 \n", "8726 -1.6259 -0.1834 \n", "2185 2.5788 1.2502 \n", "3315 0.0000 -0.5599 \n", "5289 0.8281 -0.9206 \n", "868 0.1421 0.7650 \n", "1677 0.3969 0.9042 \n", "7043 0.0147 1.1314 \n", "5613 0.0717 0.5023 \n", "⋮ ⋮ ⋮ \n", "54552 1.8504 -0.2516 \n", "54920 0.4583 0.8514 \n", "11178 -1.7519 0.3908 \n", "93643 2.1395 -0.4617 \n", "112869 2.3786 1.1703 \n", "51147 1.9107 1.5612 \n", "196403 1.4798 0.1850 \n", "389677 0.6175 -0.6872 \n", "1296 0.9755 0.6923 \n", "85352 -0.0009 3.7638 \n", "57610 1.5447 -0.0599 \n", "27147 1.3721 -0.4534 \n", "79591 2.1479 1.1361 \n", "92595 0.3339 1.3473 \n", "51063 0.9597 1.8933 \n", "55223 -0.7425 1.5926 \n", "80022 1.0909 0.1379 \n", "55589 -1.7398 1.1566 \n", "376267 0.1199 1.2685 \n", "84820 1.1424 -0.0597 \n", "2931 0.2727 0.5013 \n", "63876 -0.7579 -0.6265 \n", "51275 0.3883 0.6793 \n", "158747 2.4502 1.9125 \n", "283232 0.3257 1.1194 \n", "25960 0.8320 -0.3680 \n", "6376 1.1901 -0.0144 \n", "11033 1.2484 -0.1491 \n", "54869 -0.1743 1.0657 \n", "60 -1.4556 -0.2475 \n", " alpha-tocopherol__PC3__trt_cp cisplatin__PC3__trt_cp\n", "5720 -1.2731 -0.5659 \n", "466 0.5907 -0.2468 \n", "6009 -1.8149 0.0000 \n", "2309 -1.5376 0.6194 \n", "387 -0.3862 0.1973 \n", "3553 -0.1367 -0.6745 \n", "427 -0.7753 -0.8029 \n", "5898 0.2776 0.0750 \n", "23365 0.7769 0.3405 \n", "6657 1.4368 0.5604 \n", "5054 0.5751 0.2370 \n", "3108 -0.5842 -0.3346 \n", "1950 1.1675 -0.0811 \n", "351 -1.4754 0.3245 \n", "4846 0.0000 0.8742 \n", "1452 -0.7107 -1.8170 \n", "4776 1.3320 0.3057 \n", "6908 -0.8340 0.1707 \n", "672 -1.3417 0.5860 \n", "5710 -0.4195 0.8007 \n", "2115 0.8669 -2.4175 \n", "7015 0.8714 0.6421 \n", "8726 -0.9279 -5.2129 \n", "2185 1.2122 0.2189 \n", "3315 -0.7747 0.9959 \n", "5289 0.6822 -0.9480 \n", "868 0.4446 0.2584 \n", "1677 0.0418 0.4508 \n", "7043 1.5184 1.1396 \n", "5613 0.3477 -2.3664 \n", "⋮ ⋮ ⋮ \n", "54552 1.3114 -0.1993 \n", "54920 0.3027 1.4400 \n", "11178 -1.0155 -0.2487 \n", "93643 1.2257 0.0263 \n", "112869 1.1386 0.7210 \n", "51147 0.3518 1.2840 \n", "196403 1.3844 0.3240 \n", "389677 1.1080 -0.3949 \n", "1296 -0.1845 0.1797 \n", "85352 1.6589 0.1591 \n", "57610 1.6722 0.2858 \n", "27147 -0.3415 0.3251 \n", "79591 -0.7604 1.6378 \n", "92595 0.0010 0.0615 \n", "51063 1.1444 0.9759 \n", "55223 0.3204 0.3486 \n", "80022 0.6538 0.9385 \n", "55589 -0.5645 1.4264 \n", "376267 0.9052 0.0267 \n", "84820 0.7671 0.5935 \n", "2931 0.8471 0.2688 \n", "63876 0.8404 -0.2692 \n", "51275 0.3237 -0.4276 \n", "158747 0.2526 0.5455 \n", "283232 0.5754 -0.4345 \n", "25960 0.6608 -0.2463 \n", "6376 1.5630 0.3335 \n", "11033 0.0777 0.3478 \n", "54869 0.7791 1.0932 \n", "60 -0.6307 -0.2042 \n", " iniparib__PC3__trt_cp JMW-MITF1__PC3__trt_cp bortezomib__PC3__trt_cp\n", "5720 0.4571 0.0308 -0.2913 \n", "466 0.7582 0.4957 -1.0830 \n", "6009 0.3941 -1.6190 0.1462 \n", "2309 -0.2978 0.5139 2.9324 \n", "387 -0.4246 -0.5682 0.6157 \n", "3553 -1.0342 -1.3800 -0.9713 \n", "427 1.6375 1.7251 1.2290 \n", "5898 -2.8649 0.5809 1.7948 \n", "23365 -0.6687 0.4276 -2.5250 \n", "6657 -1.3073 -0.8898 -0.4415 \n", "5054 0.4596 0.3050 -1.6550 \n", "3108 1.3939 -0.4618 0.4915 \n", "1950 -0.4084 -0.6610 -0.0670 \n", "351 1.2609 0.4734 1.3987 \n", "4846 0.5819 0.4788 1.4877 \n", "1452 0.3777 -1.1747 1.5557 \n", "4776 -0.9554 -0.9277 -1.0772 \n", "6908 0.7447 0.8058 -0.3623 \n", "672 0.7067 -0.6479 2.8601 \n", "5710 0.8163 -0.6469 2.6838 \n", "2115 -1.3462 0.1283 -0.6444 \n", "7015 -0.9362 -0.4963 -0.4187 \n", "8726 -0.4035 0.8041 1.4548 \n", "2185 -0.3260 -0.4259 -0.4624 \n", "3315 -0.9554 -0.6129 2.3237 \n", "5289 -0.2322 -1.1048 0.8300 \n", "868 0.1067 0.5922 1.3067 \n", "1677 0.3277 4.0569 -3.5420 \n", "7043 -0.7535 -0.1550 -0.5552 \n", "5613 -0.3586 -0.3032 -0.4723 \n", "⋮ ⋮ ⋮ ⋮ \n", "54552 -1.4090 -0.4407 -2.0924 \n", "54920 -1.0779 -0.6745 0.0638 \n", "11178 -0.6887 -0.6171 -0.5462 \n", "93643 -1.3893 -1.9883 0.7824 \n", "112869 -0.1182 -0.0510 -1.0956 \n", "51147 -1.4728 -0.3504 0.0130 \n", "196403 -0.4564 0.3414 0.1307 \n", "389677 -0.7650 0.6032 -0.5789 \n", "1296 -0.0929 0.0885 0.6156 \n", "85352 -0.6720 -1.0518 -1.5408 \n", "57610 1.6272 -0.8244 0.9907 \n", "27147 -1.3887 0.4315 0.1750 \n", "79591 -0.0226 0.0510 -0.0003 \n", "92595 -0.2524 0.0479 -0.3532 \n", "51063 -0.1300 -0.5763 -0.3481 \n", "55223 -1.2565 -0.0055 -0.3076 \n", "80022 -0.8598 -0.1190 -1.1109 \n", "55589 1.8400 -0.1273 1.2060 \n", "376267 0.0809 -1.1636 0.2976 \n", "84820 -0.5742 -1.0844 -0.5707 \n", "2931 0.7681 -0.5762 -0.8154 \n", "63876 0.8911 -0.2046 -0.8071 \n", "51275 0.7665 0.5685 -1.0498 \n", "158747 0.1402 -0.9180 -1.9362 \n", "283232 -3.3375 0.5196 -1.5637 \n", "25960 -2.4105 0.1107 -0.2676 \n", "6376 1.0411 -1.1291 0.6466 \n", "11033 -0.7770 -0.2837 -0.0944 \n", "54869 -0.5247 -0.5104 -0.2863 \n", "60 0.7773 0.3077 1.8114 \n", " selumetinib__PC3__trt_cp glutamine__PC3__trt_cp MW-MITF24__PC3__trt_cp\n", "5720 -0.9489 -1.0550 -1.9929 \n", "466 0.3153 1.3292 -0.5015 \n", "6009 -2.1747 -0.2952 -2.1053 \n", "2309 -0.9933 -0.0140 -1.1789 \n", "387 -0.3696 0.3436 -3.2787 \n", "3553 1.2338 -1.3174 -0.6564 \n", "427 0.0243 -0.7690 -0.6058 \n", "5898 -0.0093 1.2902 0.2903 \n", "23365 0.0963 0.0482 0.0963 \n", "6657 0.7747 -0.3321 2.5004 \n", "5054 0.0137 0.4267 0.6745 \n", "3108 0.0590 0.1180 1.7550 \n", "1950 1.3110 -1.1154 2.5754 \n", "351 -0.1130 -0.8090 0.3988 \n", "4846 -0.3579 -0.6335 -0.7591 \n", "1452 -0.0845 -1.1233 -1.5332 \n", "4776 0.3361 -0.9042 3.1649 \n", "6908 -1.9207 0.1919 -1.5016 \n", "672 2.8988 -0.1277 0.1526 \n", "5710 -0.4705 -1.5872 -1.9920 \n", "2115 0.9818 -0.0399 0.1548 \n", "7015 0.6203 -0.1979 3.4552 \n", "8726 1.4854 1.7362 1.4854 \n", "2185 1.4268 -1.4473 2.8440 \n", "3315 -0.7365 -0.4083 -3.0874 \n", "5289 0.4654 -0.5206 0.6745 \n", "868 -0.8527 -0.3135 0.8328 \n", "1677 -0.8606 -0.0633 2.4948 \n", "7043 0.9483 0.5121 0.9929 \n", "5613 -0.3586 -0.7751 1.1149 \n", "⋮ ⋮ ⋮ ⋮ \n", "54552 0.6877 0.7649 -0.1186 \n", "54920 0.4723 0.0850 0.7503 \n", "11178 -0.1172 -1.4105 0.1631 \n", "93643 0.2161 -0.5916 2.0450 \n", "112869 0.8456 -0.5989 1.1402 \n", "51147 0.4459 -0.4840 0.9162 \n", "196403 0.2026 -1.4586 1.7090 \n", "389677 0.8575 1.2912 -0.5854 \n", "1296 0.2872 -0.6606 0.7912 \n", "85352 -0.1605 0.1139 2.4243 \n", "57610 0.4710 0.1368 1.4276 \n", "27147 -0.6396 -1.0847 1.3937 \n", "79591 -0.4592 0.8158 1.6554 \n", "92595 -0.2950 0.0858 0.1184 \n", "51063 -1.0736 -0.0896 1.2923 \n", "55223 -0.5895 -0.6759 1.1372 \n", "80022 0.0832 -0.2971 0.8936 \n", "55589 0.2184 1.3779 -0.5626 \n", "376267 1.9446 -0.9014 1.8036 \n", "84820 2.0601 -0.2694 1.1255 \n", "2931 -0.0992 -0.7370 1.7226 \n", "63876 -0.1506 -1.6715 0.9172 \n", "51275 1.5715 -1.7042 -0.0870 \n", "158747 1.3076 -0.5795 0.3890 \n", "283232 1.1416 0.2517 -0.1119 \n", "25960 0.6119 1.1775 0.9155 \n", "6376 1.4029 -1.0273 0.0192 \n", "11033 0.7815 -0.3094 2.2588 \n", "54869 -0.5035 1.2087 2.5072 \n", "60 -1.0285 0.0535 -1.3198 " ] }, "metadata": {}, "output_type": "display_data" } ], "source": [ "query(eh, c(\"signatureSearchData\", \"lincs\"))\n", "lincs_path <- eh[[\"EH3226\"]]\n", "h5ls(lincs_path)\n", "lincs <- SummarizedExperiment(HDF5Array(lincs_path, name=\"assay\"))\n", "lincs <- as.matrix(lincs@assays@data[[1]])\n", "rownames(lincs) <- HDF5Array(lincs_path, name=\"rownames\")[,1]\n", "colnames(lincs) <- HDF5Array(lincs_path, name=\"colnames\")[,1] #12328 x 45956\n", "lincs" ] }, { "cell_type": "code", "execution_count": 31, "id": "246033ee-57cb-4f94-87cc-5c4e940eb77d", "metadata": { "execution": { "iopub.execute_input": "2021-09-23T06:22:12.753494Z", "iopub.status.busy": "2021-09-23T06:22:12.750009Z", "iopub.status.idle": "2021-09-23T06:22:12.908881Z", "shell.execute_reply": "2021-09-23T06:22:12.907709Z" }, "tags": [], "vscode": { "languageId": "r" } }, "outputs": [ { "name": "stderr", "output_type": "stream", "text": [ "'select()' returned 1:1 mapping between keys and columns\n", "\n" ] }, { "data": { "text/html": [ "\n", "\n", "\n", "\t\n", "\t\n", "\n", "\n", "\t\n", "\t\n", "\t\n", "\t\n", "\n", "
A data.frame: 4 × 2
SYMBOLENTREZID
<chr><chr>
1VENTX27287
2OTP 23440
3ISL1 3670
4HOXC53222
\n" ], "text/latex": [ "A data.frame: 4 × 2\n", "\\begin{tabular}{r|ll}\n", " & SYMBOL & ENTREZID\\\\\n", " & & \\\\\n", "\\hline\n", "\t1 & VENTX & 27287\\\\\n", "\t2 & OTP & 23440\\\\\n", "\t3 & ISL1 & 3670 \\\\\n", "\t4 & HOXC5 & 3222 \\\\\n", "\\end{tabular}\n" ], "text/markdown": [ "\n", "A data.frame: 4 × 2\n", "\n", "| | SYMBOL <chr> | ENTREZID <chr> |\n", "|---|---|---|\n", "| 1 | VENTX | 27287 |\n", "| 2 | OTP | 23440 |\n", "| 3 | ISL1 | 3670 |\n", "| 4 | HOXC5 | 3222 |\n", "\n" ], "text/plain": [ " SYMBOL ENTREZID\n", "1 VENTX 27287 \n", "2 OTP 23440 \n", "3 ISL1 3670 \n", "4 HOXC5 3222 " ] }, "metadata": {}, "output_type": "display_data" } ], "source": [ "#### load tumor-specific TFs\n", "tumor.specific.TFs <- readRDS(\"/data/active_data/lzl/RenalTumor-20200713/DataAnalysis-20210803/scATAC/5.Motif/Analysis/tumor.specific.TFs.rds\")\n", "idx <- which(tumor.specific.TFs$Name %in% c(\"HOXC5\", \"VENTX\", \"ISL1\", \"OTP\"))\n", "tumor.specific.TFs <- tumor.specific.TFs[idx,]\n", "#convert to entrez id\n", "source(file = \"/home/longzhilin/Analysis_Code/IDConvert.R\")\n", "gene.info <- IDConvert(tumor.specific.TFs$Name, method = \"clusterProfiler\", fromType = \"SYMBOL\", toType = \"ENTREZID\")\n", "gene.info" ] }, { "cell_type": "code", "execution_count": null, "id": "e9468716-4dad-4a8d-8df4-d1169132a807", "metadata": { "vscode": { "languageId": "r" } }, "outputs": [], "source": [] }, { "cell_type": "code", "execution_count": 32, "id": "62aad8e3-20fb-4ae0-9b99-b33a18cac8f4", "metadata": { "execution": { "iopub.execute_input": "2021-09-23T06:22:17.113899Z", "iopub.status.busy": "2021-09-23T06:22:17.109459Z", "iopub.status.idle": "2021-09-23T06:22:17.249510Z", "shell.execute_reply": "2021-09-23T06:22:17.248321Z" }, "tags": [], "vscode": { "languageId": "r" } }, "outputs": [ { "data": { "text/html": [ "\n", "\n", "\n", "\t\n", "\n", "\n", "\t\n", "\t\n", "\t\n", "\n", "
A matrix: 3 × 45956 of type dbl
BRD-A03772856__CD34__trt_cptrichostatin-a__CD34__trt_cpgeldanamycin__CD34__trt_cpKUC107191N__CD34__trt_cpBRD-A35207501__CD34__trt_cpiloprost__CD34__trt_cpBRD-A72498772__CD34__trt_cpBRD-A72796238__CD34__trt_cpBRD-A73513677__CD34__trt_cpBRD-A73558769__CD34__trt_cpMW-MITF24__MCF7__trt_cpl-buthionine-sulfoximine__PC3__trt_cpalpha-tocopherol__PC3__trt_cpcisplatin__PC3__trt_cpiniparib__PC3__trt_cpJMW-MITF1__PC3__trt_cpbortezomib__PC3__trt_cpselumetinib__PC3__trt_cpglutamine__PC3__trt_cpMW-MITF24__PC3__trt_cp
VENTX-0.867452.68542.931400.316550.267201.3062376-0.378350.5864-0.19235-0.362551.68580.4772 0.66720.4269-0.6599-0.7321-0.52950.8246-0.9867 1.9501
ISL1-0.183400.02902.108400.863450.121250.4669212 0.602401.9325 0.64980-0.450652.42532.1372-2.31090.4266-0.1666 0.6976-3.85501.1637 0.0608-0.5077
HOXC5-0.590253.27822.694451.322650.614152.0156755-0.212001.0597-0.46980 0.282351.12150.7762 0.20860.1258-0.5124 0.6798-1.92510.6460-1.3305 0.4147
\n" ], "text/latex": [ "A matrix: 3 × 45956 of type dbl\n", "\\begin{tabular}{r|lllllllllllllllllllll}\n", " & BRD-A03772856\\_\\_CD34\\_\\_trt\\_cp & trichostatin-a\\_\\_CD34\\_\\_trt\\_cp & geldanamycin\\_\\_CD34\\_\\_trt\\_cp & KUC107191N\\_\\_CD34\\_\\_trt\\_cp & BRD-A35207501\\_\\_CD34\\_\\_trt\\_cp & iloprost\\_\\_CD34\\_\\_trt\\_cp & BRD-A72498772\\_\\_CD34\\_\\_trt\\_cp & BRD-A72796238\\_\\_CD34\\_\\_trt\\_cp & BRD-A73513677\\_\\_CD34\\_\\_trt\\_cp & BRD-A73558769\\_\\_CD34\\_\\_trt\\_cp & ⋯ & MW-MITF24\\_\\_MCF7\\_\\_trt\\_cp & l-buthionine-sulfoximine\\_\\_PC3\\_\\_trt\\_cp & alpha-tocopherol\\_\\_PC3\\_\\_trt\\_cp & cisplatin\\_\\_PC3\\_\\_trt\\_cp & iniparib\\_\\_PC3\\_\\_trt\\_cp & JMW-MITF1\\_\\_PC3\\_\\_trt\\_cp & bortezomib\\_\\_PC3\\_\\_trt\\_cp & selumetinib\\_\\_PC3\\_\\_trt\\_cp & glutamine\\_\\_PC3\\_\\_trt\\_cp & MW-MITF24\\_\\_PC3\\_\\_trt\\_cp\\\\\n", "\\hline\n", "\tVENTX & -0.86745 & 2.6854 & 2.93140 & 0.31655 & 0.26720 & 1.3062376 & -0.37835 & 0.5864 & -0.19235 & -0.36255 & ⋯ & 1.6858 & 0.4772 & 0.6672 & 0.4269 & -0.6599 & -0.7321 & -0.5295 & 0.8246 & -0.9867 & 1.9501\\\\\n", "\tISL1 & -0.18340 & 0.0290 & 2.10840 & 0.86345 & 0.12125 & 0.4669212 & 0.60240 & 1.9325 & 0.64980 & -0.45065 & ⋯ & 2.4253 & 2.1372 & -2.3109 & 0.4266 & -0.1666 & 0.6976 & -3.8550 & 1.1637 & 0.0608 & -0.5077\\\\\n", "\tHOXC5 & -0.59025 & 3.2782 & 2.69445 & 1.32265 & 0.61415 & 2.0156755 & -0.21200 & 1.0597 & -0.46980 & 0.28235 & ⋯ & 1.1215 & 0.7762 & 0.2086 & 0.1258 & -0.5124 & 0.6798 & -1.9251 & 0.6460 & -1.3305 & 0.4147\\\\\n", "\\end{tabular}\n" ], "text/markdown": [ "\n", "A matrix: 3 × 45956 of type dbl\n", "\n", "| | BRD-A03772856__CD34__trt_cp | trichostatin-a__CD34__trt_cp | geldanamycin__CD34__trt_cp | KUC107191N__CD34__trt_cp | BRD-A35207501__CD34__trt_cp | iloprost__CD34__trt_cp | BRD-A72498772__CD34__trt_cp | BRD-A72796238__CD34__trt_cp | BRD-A73513677__CD34__trt_cp | BRD-A73558769__CD34__trt_cp | ⋯ | MW-MITF24__MCF7__trt_cp | l-buthionine-sulfoximine__PC3__trt_cp | alpha-tocopherol__PC3__trt_cp | cisplatin__PC3__trt_cp | iniparib__PC3__trt_cp | JMW-MITF1__PC3__trt_cp | bortezomib__PC3__trt_cp | selumetinib__PC3__trt_cp | glutamine__PC3__trt_cp | MW-MITF24__PC3__trt_cp |\n", "|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|\n", "| VENTX | -0.86745 | 2.6854 | 2.93140 | 0.31655 | 0.26720 | 1.3062376 | -0.37835 | 0.5864 | -0.19235 | -0.36255 | ⋯ | 1.6858 | 0.4772 | 0.6672 | 0.4269 | -0.6599 | -0.7321 | -0.5295 | 0.8246 | -0.9867 | 1.9501 |\n", "| ISL1 | -0.18340 | 0.0290 | 2.10840 | 0.86345 | 0.12125 | 0.4669212 | 0.60240 | 1.9325 | 0.64980 | -0.45065 | ⋯ | 2.4253 | 2.1372 | -2.3109 | 0.4266 | -0.1666 | 0.6976 | -3.8550 | 1.1637 | 0.0608 | -0.5077 |\n", "| HOXC5 | -0.59025 | 3.2782 | 2.69445 | 1.32265 | 0.61415 | 2.0156755 | -0.21200 | 1.0597 | -0.46980 | 0.28235 | ⋯ | 1.1215 | 0.7762 | 0.2086 | 0.1258 | -0.5124 | 0.6798 | -1.9251 | 0.6460 | -1.3305 | 0.4147 |\n", "\n" ], "text/plain": [ " BRD-A03772856__CD34__trt_cp trichostatin-a__CD34__trt_cp\n", "VENTX -0.86745 2.6854 \n", "ISL1 -0.18340 0.0290 \n", "HOXC5 -0.59025 3.2782 \n", " geldanamycin__CD34__trt_cp KUC107191N__CD34__trt_cp\n", "VENTX 2.93140 0.31655 \n", "ISL1 2.10840 0.86345 \n", "HOXC5 2.69445 1.32265 \n", " BRD-A35207501__CD34__trt_cp iloprost__CD34__trt_cp\n", "VENTX 0.26720 1.3062376 \n", "ISL1 0.12125 0.4669212 \n", "HOXC5 0.61415 2.0156755 \n", " BRD-A72498772__CD34__trt_cp BRD-A72796238__CD34__trt_cp\n", "VENTX -0.37835 0.5864 \n", "ISL1 0.60240 1.9325 \n", "HOXC5 -0.21200 1.0597 \n", " BRD-A73513677__CD34__trt_cp BRD-A73558769__CD34__trt_cp ⋯\n", "VENTX -0.19235 -0.36255 ⋯\n", "ISL1 0.64980 -0.45065 ⋯\n", "HOXC5 -0.46980 0.28235 ⋯\n", " MW-MITF24__MCF7__trt_cp l-buthionine-sulfoximine__PC3__trt_cp\n", "VENTX 1.6858 0.4772 \n", "ISL1 2.4253 2.1372 \n", "HOXC5 1.1215 0.7762 \n", " alpha-tocopherol__PC3__trt_cp cisplatin__PC3__trt_cp\n", "VENTX 0.6672 0.4269 \n", "ISL1 -2.3109 0.4266 \n", "HOXC5 0.2086 0.1258 \n", " iniparib__PC3__trt_cp JMW-MITF1__PC3__trt_cp bortezomib__PC3__trt_cp\n", "VENTX -0.6599 -0.7321 -0.5295 \n", "ISL1 -0.1666 0.6976 -3.8550 \n", "HOXC5 -0.5124 0.6798 -1.9251 \n", " selumetinib__PC3__trt_cp glutamine__PC3__trt_cp MW-MITF24__PC3__trt_cp\n", "VENTX 0.8246 -0.9867 1.9501 \n", "ISL1 1.1637 0.0608 -0.5077 \n", "HOXC5 0.6460 -1.3305 0.4147 " ] }, "metadata": {}, "output_type": "display_data" }, { "data": { "text/html": [ "\n", "
  1. 3
  2. 45956
\n" ], "text/latex": [ "\\begin{enumerate*}\n", "\\item 3\n", "\\item 45956\n", "\\end{enumerate*}\n" ], "text/markdown": [ "1. 3\n", "2. 45956\n", "\n", "\n" ], "text/plain": [ "[1] 3 45956" ] }, "metadata": {}, "output_type": "display_data" } ], "source": [ "index <- match(gene.info$ENTREZID, rownames(lincs))\n", "lincs.TF.matrix <- lincs[na.omit(index),]\n", "rownames(lincs.TF.matrix) <- gene.info$SYMBOL[which(!is.na(index))]\n", "lincs.TF.matrix\n", "dim(lincs.TF.matrix)" ] }, { "cell_type": "code", "execution_count": 33, "id": "d4a31f92-a011-4a97-be3b-347fc8c2f761", "metadata": { "collapsed": true, "execution": { "iopub.execute_input": "2021-09-23T06:22:27.432913Z", "iopub.status.busy": "2021-09-23T06:22:27.429496Z", "iopub.status.idle": "2021-09-23T06:22:27.599993Z", "shell.execute_reply": "2021-09-23T06:22:27.598811Z" }, "jupyter": { "outputs_hidden": true }, "tags": [], "vscode": { "languageId": "r" } }, "outputs": [ { "data": { "text/html": [ "
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$VENTX
\n", "\t\t
\n", "\n", "\n", "\t\n", "\t\n", "\n", "\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\n", "
A data.frame: 80 × 2
drugzscore
<chr><dbl>
butoconazole__HCC515__trt_cpbutoconazole__HCC515__trt_cp-2.043097
amcinonide__VCAP__trt_cpamcinonide__VCAP__trt_cp -2.013700
verteporfin__VCAP__trt_cpverteporfin__VCAP__trt_cp -2.372383
napelline__HT29__trt_cpnapelline__HT29__trt_cp -2.024536
clioquinol__HT29__trt_cpclioquinol__HT29__trt_cp -2.086267
NS-3694__VCAP__trt_cpNS-3694__VCAP__trt_cp -2.178900
AS-605240__VCAP__trt_cpAS-605240__VCAP__trt_cp -2.451528
SJ-172550__VCAP__trt_cpSJ-172550__VCAP__trt_cp -2.893954
JAS07-005__VCAP__trt_cpJAS07-005__VCAP__trt_cp -2.086582
BRD-A38425832__MCF7__trt_cpBRD-A38425832__MCF7__trt_cp -2.438600
BRD-K32827536__PC3__trt_cpBRD-K32827536__PC3__trt_cp -2.027371
BRD-K48844671__PC3__trt_cpBRD-K48844671__PC3__trt_cp -2.115793
BRD-K23165181__VCAP__trt_cpBRD-K23165181__VCAP__trt_cp -2.151439
BRD-K58247702__VCAP__trt_cpBRD-K58247702__VCAP__trt_cp -2.014121
BRD-K70917163__VCAP__trt_cpBRD-K70917163__VCAP__trt_cp -2.195663
KU-C104140__A549__trt_cpKU-C104140__A549__trt_cp -2.076100
BRD-A11095214__MCF7__trt_cpBRD-A11095214__MCF7__trt_cp -2.200500
BRD-K33182644__MCF7__trt_cpBRD-K33182644__MCF7__trt_cp -2.137250
BRD-K98991361__A549__trt_cpBRD-K98991361__A549__trt_cp -2.161300
oxcarbazepine__MCF7__trt_cpoxcarbazepine__MCF7__trt_cp -2.080350
lansoprazole__VCAP__trt_cplansoprazole__VCAP__trt_cp -2.672177
kitasamycin__VCAP__trt_cpkitasamycin__VCAP__trt_cp -2.771939
BRD-A16581344__A549__trt_cpBRD-A16581344__A549__trt_cp -2.207200
BRD-K88556033__A549__trt_cpBRD-K88556033__A549__trt_cp -2.038800
RAN-27__NEU__trt_cpRAN-27__NEU__trt_cp -2.076294
BRD-K44893543__NEU__trt_cpBRD-K44893543__NEU__trt_cp -2.608974
BRD-K58279162__NEU__trt_cpBRD-K58279162__NEU__trt_cp -2.688838
BRD-K14316227__NPC__trt_cpBRD-K14316227__NPC__trt_cp -2.204158
treprostinil__PHH__trt_cptreprostinil__PHH__trt_cp -2.756694
BRD-K82971429__PHH__trt_cpBRD-K82971429__PHH__trt_cp -2.028831
NSC-663284__PHH__trt_cpNSC-663284__PHH__trt_cp -2.211250
zoxazolamine__PHH__trt_cpzoxazolamine__PHH__trt_cp -2.148100
nateglinide__PHH__trt_cpnateglinide__PHH__trt_cp -2.026000
LFM-A13__NEU__trt_cpLFM-A13__NEU__trt_cp -2.864500
BML-257__NEU__trt_cpBML-257__NEU__trt_cp -3.350300
lamotrigine__NEU__trt_cplamotrigine__NEU__trt_cp -2.059334
IC-261__PHH__trt_cpIC-261__PHH__trt_cp -2.089171
L-701252__PHH__trt_cpL-701252__PHH__trt_cp -3.265500
mometasone__PHH__trt_cpmometasone__PHH__trt_cp -2.173689
scoulerine__PHH__trt_cpscoulerine__PHH__trt_cp -2.078122
dihydroergotamine__PHH__trt_cpdihydroergotamine__PHH__trt_cp -2.580976
dipyridamole__PHH__trt_cpdipyridamole__PHH__trt_cp -2.045686
tyrphostin-AG-825__MCF7__trt_cptyrphostin-AG-825__MCF7__trt_cp-2.394913
rosmarinic-acid__NPC__trt_cprosmarinic-acid__NPC__trt_cp -2.170692
amthamine__PHH__trt_cpamthamine__PHH__trt_cp -2.258550
NAN-190__PHH__trt_cpNAN-190__PHH__trt_cp -4.584300
BRD-K24053449__MCF7__trt_cpBRD-K24053449__MCF7__trt_cp -2.124968
BRD-K88278225__PC3__trt_cpBRD-K88278225__PC3__trt_cp -5.143122
BRD-K03358980__VCAP__trt_cpBRD-K03358980__VCAP__trt_cp -2.230576
BRD-K06592610__VCAP__trt_cpBRD-K06592610__VCAP__trt_cp -2.063635
RDR-01440SC__VCAP__trt_cpRDR-01440SC__VCAP__trt_cp -2.042054
BRD-K76691125__VCAP__trt_cpBRD-K76691125__VCAP__trt_cp -2.113669
tubacin__VCAP__trt_cptubacin__VCAP__trt_cp -3.499640
BRD-K47512679__NPC__trt_cpBRD-K47512679__NPC__trt_cp -2.032956
BRD-K05353139__HT29__trt_cpBRD-K05353139__HT29__trt_cp -2.013206
BRD-K48598367__NEU__trt_cpBRD-K48598367__NEU__trt_cp -2.556500
SA-419083__NPC__trt_cpSA-419083__NPC__trt_cp -2.028479
BRD-K28772322__VCAP__trt_cpBRD-K28772322__VCAP__trt_cp -2.263741
nocodazole__FIBRNPC__trt_cpnocodazole__FIBRNPC__trt_cp -2.172350
AVA__HA1E__trt_cpAVA__HA1E__trt_cp -2.028199
\n", "
\n", "\t
$ISL1
\n", "\t\t
\n", "\n", "\n", "\t\n", "\t\n", "\n", "\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\n", "
A data.frame: 197 × 2
drugzscore
<chr><dbl>
BRD-K26684619__CD34__trt_cpBRD-K26684619__CD34__trt_cp -2.040950
BRD-A51929314__HA1E__trt_cpBRD-A51929314__HA1E__trt_cp -2.227154
MRS-1845__HCC515__trt_cpMRS-1845__HCC515__trt_cp -2.417191
melperone__HCC515__trt_cpmelperone__HCC515__trt_cp -2.385237
FCCP__HCC515__trt_cpFCCP__HCC515__trt_cp -2.176191
BCL2-inhibitor__VCAP__trt_cpBCL2-inhibitor__VCAP__trt_cp -2.520154
ubenimex__VCAP__trt_cpubenimex__VCAP__trt_cp -2.167702
epitestosterone__VCAP__trt_cpepitestosterone__VCAP__trt_cp -2.142600
procainamide__VCAP__trt_cpprocainamide__VCAP__trt_cp -2.136900
anagrelide__HA1E__trt_cpanagrelide__HA1E__trt_cp -2.888882
bithionol__HCC515__trt_cpbithionol__HCC515__trt_cp -2.335168
GW-1929__VCAP__trt_cpGW-1929__VCAP__trt_cp -3.890623
CMPD-1__A375__trt_cpCMPD-1__A375__trt_cp -2.118605
ST-638__HA1E__trt_cpST-638__HA1E__trt_cp -2.139165
fluocinolone-acetonide__HT29__trt_cpfluocinolone-acetonide__HT29__trt_cp-2.311850
mitoxantrone__HT29__trt_cpmitoxantrone__HT29__trt_cp -2.173384
L-168049__VCAP__trt_cpL-168049__VCAP__trt_cp -2.498789
BX-795__HT29__trt_cpBX-795__HT29__trt_cp -2.146887
cucurbitacin-i__MCF7__trt_cpcucurbitacin-i__MCF7__trt_cp -2.131572
CT-200783__VCAP__trt_cpCT-200783__VCAP__trt_cp -2.346538
BRD-K60870698__A375__trt_cpBRD-K60870698__A375__trt_cp -2.611861
BRD-K84203638__A375__trt_cpBRD-K84203638__A375__trt_cp -2.241982
BRD-K05153001__A549__trt_cpBRD-K05153001__A549__trt_cp -2.140815
BRD-K85275009__A549__trt_cpBRD-K85275009__A549__trt_cp -4.711900
BRD-K05402890__HA1E__trt_cpBRD-K05402890__HA1E__trt_cp -2.309873
BRD-A58924247__HT29__trt_cpBRD-A58924247__HT29__trt_cp -2.229404
BRD-K91691979__PC3__trt_cpBRD-K91691979__PC3__trt_cp -2.309459
BRD-K19735876__A375__trt_cpBRD-K19735876__A375__trt_cp -2.083350
BRD-A21406558__MCF7__trt_cpBRD-A21406558__MCF7__trt_cp -2.156250
BRD-K07259155__MCF7__trt_cpBRD-K07259155__MCF7__trt_cp -2.299050
SR-12813__NEU__trt_cpSR-12813__NEU__trt_cp -2.061450
LBH-589__NEU__trt_cpLBH-589__NEU__trt_cp -2.051542
BG-1003__NPC__trt_cpBG-1003__NPC__trt_cp -2.050464
LBH-589__NPC__trt_cpLBH-589__NPC__trt_cp -2.351810
BG-1008__NEU__trt_cpBG-1008__NEU__trt_cp -2.506527
temozolomide__NEU__trt_cptemozolomide__NEU__trt_cp -2.358148
BG-1005__NEU__trt_cpBG-1005__NEU__trt_cp -2.408175
BG-1025__NEU__trt_cpBG-1025__NEU__trt_cp -2.330200
C2-dihydroceramide__NEU__trt_cpC2-dihydroceramide__NEU__trt_cp -2.060200
BG-1030__NEU__trt_cpBG-1030__NEU__trt_cp -2.047566
oxamflatin__NPC__trt_cpoxamflatin__NPC__trt_cp -2.670142
BG-1029__NPC__trt_cpBG-1029__NPC__trt_cp -2.168213
BG-1006__NPC__trt_cpBG-1006__NPC__trt_cp -2.664152
BML-284__NPC__trt_cpBML-284__NPC__trt_cp -4.036828
M-344__NPC__trt_cpM-344__NPC__trt_cp -2.041860
BG-1025__NPC__trt_cpBG-1025__NPC__trt_cp -2.107575
BG-1026__NPC__trt_cpBG-1026__NPC__trt_cp -2.440128
NCH-51__NPC__trt_cpNCH-51__NPC__trt_cp -2.122013
BG-1007__NPC__trt_cpBG-1007__NPC__trt_cp -2.229874
BG-1028__NPC__trt_cpBG-1028__NPC__trt_cp -2.391268
BG-1027__NPC__trt_cpBG-1027__NPC__trt_cp -2.334610
tert-butylhydroquinone__MCF7__trt_cptert-butylhydroquinone__MCF7__trt_cp-3.080953
panobinostat__A375__trt_cppanobinostat__A375__trt_cp -2.063759
staurosporine__A375__trt_cpstaurosporine__A375__trt_cp -3.507200
apicidin__A375__trt_cpapicidin__A375__trt_cp -2.681550
BRD-K57064803__MCF7__trt_cpBRD-K57064803__MCF7__trt_cp -2.356925
alpha-tocopherol__MCF7__trt_cpalpha-tocopherol__MCF7__trt_cp -2.502400
JMW-MITF1__MCF7__trt_cpJMW-MITF1__MCF7__trt_cp -2.199600
alpha-tocopherol__PC3__trt_cpalpha-tocopherol__PC3__trt_cp -2.310900
bortezomib__PC3__trt_cpbortezomib__PC3__trt_cp -3.855000
\n", "
\n", "\t
$HOXC5
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\n", "\n", "\n", "\t\n", "\t\n", "\n", "\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\n", "
A data.frame: 49 × 2
drugzscore
<chr><dbl>
aminomethyltransferase__HA1E__trt_cpaminomethyltransferase__HA1E__trt_cp -2.349426
ARP-101__HA1E__trt_cpARP-101__HA1E__trt_cp -2.420850
homoharringtonine__HA1E__trt_cphomoharringtonine__HA1E__trt_cp -2.545411
CFM-1571__HCC515__trt_cpCFM-1571__HCC515__trt_cp -2.027797
apoptosis-activator-II__HCC515__trt_cpapoptosis-activator-II__HCC515__trt_cp-2.027338
puromycin__VCAP__trt_cppuromycin__VCAP__trt_cp -3.208967
NSC-632839__VCAP__trt_cpNSC-632839__VCAP__trt_cp -2.437900
NNC-711__VCAP__trt_cpNNC-711__VCAP__trt_cp -2.587158
MG-132__VCAP__trt_cpMG-132__VCAP__trt_cp -2.497801
Ro-15-4513__VCAP__trt_cpRo-15-4513__VCAP__trt_cp -2.462467
R-59022__HA1E__trt_cpR-59022__HA1E__trt_cp -2.440392
cucurbitacin-i__MCF7__trt_cpcucurbitacin-i__MCF7__trt_cp -2.504937
SCH-79797__MCF7__trt_cpSCH-79797__MCF7__trt_cp -3.103155
BRD-K19290969__A549__trt_cpBRD-K19290969__A549__trt_cp -2.442208
BIX-02188__VCAP__trt_cpBIX-02188__VCAP__trt_cp -2.021193
BRD-A98444709__A549__trt_cpBRD-A98444709__A549__trt_cp -2.181950
BRD-K18726304__MCF7__trt_cpBRD-K18726304__MCF7__trt_cp -2.498750
toremifene__MCF7__trt_cptoremifene__MCF7__trt_cp -2.111762
BRD-K32896438__MCF7__trt_cpBRD-K32896438__MCF7__trt_cp -2.568452
RAN-27__NEU__trt_cpRAN-27__NEU__trt_cp -2.057970
BRD-K44893543__NEU__trt_cpBRD-K44893543__NEU__trt_cp -2.403568
cytochalasin-d__MCF7__trt_cpcytochalasin-d__MCF7__trt_cp -2.524929
ST-4029010__NEU__trt_cpST-4029010__NEU__trt_cp -2.160550
sorafenib__VCAP__trt_cpsorafenib__VCAP__trt_cp -2.387828
BG-FA-0953__VCAP__trt_cpBG-FA-0953__VCAP__trt_cp -2.010978
WYE-354__ASC__trt_cpWYE-354__ASC__trt_cp -2.030976
WYE-125132__MCF7__trt_cpWYE-125132__MCF7__trt_cp -2.019033
verrucarin-a__NEU__trt_cpverrucarin-a__NEU__trt_cp -2.535550
mirin__VCAP__trt_cpmirin__VCAP__trt_cp -2.051119
CGP-71683__MCF7__trt_cpCGP-71683__MCF7__trt_cp -2.191356
NSC-663284__PHH__trt_cpNSC-663284__PHH__trt_cp -2.232050
proadifen__ASC__trt_cpproadifen__ASC__trt_cp -2.171099
anisomycin__NEU__trt_cpanisomycin__NEU__trt_cp -2.530992
formoterol__SKB__trt_cpformoterol__SKB__trt_cp -2.052984
FCCP__MCF7__trt_cpFCCP__MCF7__trt_cp -2.068842
diphenyleneiodonium__MCF7__trt_cpdiphenyleneiodonium__MCF7__trt_cp -2.738179
NSC-94258__MCF7__trt_cpNSC-94258__MCF7__trt_cp -2.348442
SQ-22536__NPC__trt_cpSQ-22536__NPC__trt_cp -2.024650
pyrvinium__MCF7__trt_cppyrvinium__MCF7__trt_cp -2.287450
BRD-K00835201__NEU__trt_cpBRD-K00835201__NEU__trt_cp -2.013800
BRD-K75264577__NEU__trt_cpBRD-K75264577__NEU__trt_cp -2.051050
BRD-K01477275__NPC__trt_cpBRD-K01477275__NPC__trt_cp -2.038408
BRD-K02519835__VCAP__trt_cpBRD-K02519835__VCAP__trt_cp -2.148807
motesanib__HS578T__trt_cpmotesanib__HS578T__trt_cp -2.047123
SYK-inhibitor__SKBR3__trt_cpSYK-inhibitor__SKBR3__trt_cp -2.655849
ENMD-2076__A375__trt_cpENMD-2076__A375__trt_cp -2.061680
BRD-K99636700__HCC515__trt_cpBRD-K99636700__HCC515__trt_cp -2.166222
apicidin__HEPG2__trt_cpapicidin__HEPG2__trt_cp -2.335700
avrainvillamide-analog-4__MCF7__trt_cpavrainvillamide-analog-4__MCF7__trt_cp-2.152519
\n", "
\n", "
\n" ], "text/latex": [ "\\begin{description}\n", "\\item[\\$VENTX] A data.frame: 80 × 2\n", "\\begin{tabular}{r|ll}\n", " & drug & zscore\\\\\n", " & & \\\\\n", "\\hline\n", "\tbutoconazole\\_\\_HCC515\\_\\_trt\\_cp & butoconazole\\_\\_HCC515\\_\\_trt\\_cp & -2.043097\\\\\n", "\tamcinonide\\_\\_VCAP\\_\\_trt\\_cp & amcinonide\\_\\_VCAP\\_\\_trt\\_cp & -2.013700\\\\\n", "\tverteporfin\\_\\_VCAP\\_\\_trt\\_cp & verteporfin\\_\\_VCAP\\_\\_trt\\_cp & -2.372383\\\\\n", "\tnapelline\\_\\_HT29\\_\\_trt\\_cp & napelline\\_\\_HT29\\_\\_trt\\_cp & -2.024536\\\\\n", "\tclioquinol\\_\\_HT29\\_\\_trt\\_cp & clioquinol\\_\\_HT29\\_\\_trt\\_cp & -2.086267\\\\\n", "\tNS-3694\\_\\_VCAP\\_\\_trt\\_cp & NS-3694\\_\\_VCAP\\_\\_trt\\_cp & -2.178900\\\\\n", "\tAS-605240\\_\\_VCAP\\_\\_trt\\_cp & AS-605240\\_\\_VCAP\\_\\_trt\\_cp & -2.451528\\\\\n", "\tSJ-172550\\_\\_VCAP\\_\\_trt\\_cp & SJ-172550\\_\\_VCAP\\_\\_trt\\_cp & -2.893954\\\\\n", "\tJAS07-005\\_\\_VCAP\\_\\_trt\\_cp & JAS07-005\\_\\_VCAP\\_\\_trt\\_cp & -2.086582\\\\\n", "\tBRD-A38425832\\_\\_MCF7\\_\\_trt\\_cp & BRD-A38425832\\_\\_MCF7\\_\\_trt\\_cp & -2.438600\\\\\n", "\tBRD-K32827536\\_\\_PC3\\_\\_trt\\_cp & BRD-K32827536\\_\\_PC3\\_\\_trt\\_cp & -2.027371\\\\\n", "\tBRD-K48844671\\_\\_PC3\\_\\_trt\\_cp & BRD-K48844671\\_\\_PC3\\_\\_trt\\_cp & -2.115793\\\\\n", "\tBRD-K23165181\\_\\_VCAP\\_\\_trt\\_cp & BRD-K23165181\\_\\_VCAP\\_\\_trt\\_cp & -2.151439\\\\\n", "\tBRD-K58247702\\_\\_VCAP\\_\\_trt\\_cp & BRD-K58247702\\_\\_VCAP\\_\\_trt\\_cp & -2.014121\\\\\n", "\tBRD-K70917163\\_\\_VCAP\\_\\_trt\\_cp & BRD-K70917163\\_\\_VCAP\\_\\_trt\\_cp & -2.195663\\\\\n", "\tKU-C104140\\_\\_A549\\_\\_trt\\_cp & KU-C104140\\_\\_A549\\_\\_trt\\_cp & -2.076100\\\\\n", "\tBRD-A11095214\\_\\_MCF7\\_\\_trt\\_cp & BRD-A11095214\\_\\_MCF7\\_\\_trt\\_cp & -2.200500\\\\\n", "\tBRD-K33182644\\_\\_MCF7\\_\\_trt\\_cp & BRD-K33182644\\_\\_MCF7\\_\\_trt\\_cp & -2.137250\\\\\n", "\tBRD-K98991361\\_\\_A549\\_\\_trt\\_cp & BRD-K98991361\\_\\_A549\\_\\_trt\\_cp & -2.161300\\\\\n", "\toxcarbazepine\\_\\_MCF7\\_\\_trt\\_cp & oxcarbazepine\\_\\_MCF7\\_\\_trt\\_cp & -2.080350\\\\\n", "\tlansoprazole\\_\\_VCAP\\_\\_trt\\_cp & lansoprazole\\_\\_VCAP\\_\\_trt\\_cp & -2.672177\\\\\n", "\tkitasamycin\\_\\_VCAP\\_\\_trt\\_cp & kitasamycin\\_\\_VCAP\\_\\_trt\\_cp & -2.771939\\\\\n", "\tBRD-A16581344\\_\\_A549\\_\\_trt\\_cp & BRD-A16581344\\_\\_A549\\_\\_trt\\_cp & -2.207200\\\\\n", "\tBRD-K88556033\\_\\_A549\\_\\_trt\\_cp & BRD-K88556033\\_\\_A549\\_\\_trt\\_cp & -2.038800\\\\\n", "\tRAN-27\\_\\_NEU\\_\\_trt\\_cp & RAN-27\\_\\_NEU\\_\\_trt\\_cp & -2.076294\\\\\n", "\tBRD-K44893543\\_\\_NEU\\_\\_trt\\_cp & BRD-K44893543\\_\\_NEU\\_\\_trt\\_cp & -2.608974\\\\\n", "\tBRD-K58279162\\_\\_NEU\\_\\_trt\\_cp & BRD-K58279162\\_\\_NEU\\_\\_trt\\_cp & -2.688838\\\\\n", "\tBRD-K14316227\\_\\_NPC\\_\\_trt\\_cp & BRD-K14316227\\_\\_NPC\\_\\_trt\\_cp & -2.204158\\\\\n", "\ttreprostinil\\_\\_PHH\\_\\_trt\\_cp & treprostinil\\_\\_PHH\\_\\_trt\\_cp & -2.756694\\\\\n", "\tBRD-K82971429\\_\\_PHH\\_\\_trt\\_cp & BRD-K82971429\\_\\_PHH\\_\\_trt\\_cp & -2.028831\\\\\n", "\t⋮ & ⋮ & ⋮\\\\\n", "\tNSC-663284\\_\\_PHH\\_\\_trt\\_cp & NSC-663284\\_\\_PHH\\_\\_trt\\_cp & -2.211250\\\\\n", "\tzoxazolamine\\_\\_PHH\\_\\_trt\\_cp & zoxazolamine\\_\\_PHH\\_\\_trt\\_cp & -2.148100\\\\\n", "\tnateglinide\\_\\_PHH\\_\\_trt\\_cp & nateglinide\\_\\_PHH\\_\\_trt\\_cp & -2.026000\\\\\n", "\tLFM-A13\\_\\_NEU\\_\\_trt\\_cp & LFM-A13\\_\\_NEU\\_\\_trt\\_cp & -2.864500\\\\\n", "\tBML-257\\_\\_NEU\\_\\_trt\\_cp & BML-257\\_\\_NEU\\_\\_trt\\_cp & -3.350300\\\\\n", "\tlamotrigine\\_\\_NEU\\_\\_trt\\_cp & lamotrigine\\_\\_NEU\\_\\_trt\\_cp & -2.059334\\\\\n", "\tIC-261\\_\\_PHH\\_\\_trt\\_cp & IC-261\\_\\_PHH\\_\\_trt\\_cp & -2.089171\\\\\n", "\tL-701252\\_\\_PHH\\_\\_trt\\_cp & L-701252\\_\\_PHH\\_\\_trt\\_cp & -3.265500\\\\\n", "\tmometasone\\_\\_PHH\\_\\_trt\\_cp & mometasone\\_\\_PHH\\_\\_trt\\_cp & -2.173689\\\\\n", "\tscoulerine\\_\\_PHH\\_\\_trt\\_cp & scoulerine\\_\\_PHH\\_\\_trt\\_cp & -2.078122\\\\\n", "\tdihydroergotamine\\_\\_PHH\\_\\_trt\\_cp & dihydroergotamine\\_\\_PHH\\_\\_trt\\_cp & -2.580976\\\\\n", "\tdipyridamole\\_\\_PHH\\_\\_trt\\_cp & dipyridamole\\_\\_PHH\\_\\_trt\\_cp & -2.045686\\\\\n", "\ttyrphostin-AG-825\\_\\_MCF7\\_\\_trt\\_cp & tyrphostin-AG-825\\_\\_MCF7\\_\\_trt\\_cp & -2.394913\\\\\n", "\trosmarinic-acid\\_\\_NPC\\_\\_trt\\_cp & rosmarinic-acid\\_\\_NPC\\_\\_trt\\_cp & -2.170692\\\\\n", "\tamthamine\\_\\_PHH\\_\\_trt\\_cp & amthamine\\_\\_PHH\\_\\_trt\\_cp & -2.258550\\\\\n", "\tNAN-190\\_\\_PHH\\_\\_trt\\_cp & NAN-190\\_\\_PHH\\_\\_trt\\_cp & -4.584300\\\\\n", "\tBRD-K24053449\\_\\_MCF7\\_\\_trt\\_cp & BRD-K24053449\\_\\_MCF7\\_\\_trt\\_cp & -2.124968\\\\\n", "\tBRD-K88278225\\_\\_PC3\\_\\_trt\\_cp & BRD-K88278225\\_\\_PC3\\_\\_trt\\_cp & -5.143122\\\\\n", "\tBRD-K03358980\\_\\_VCAP\\_\\_trt\\_cp & BRD-K03358980\\_\\_VCAP\\_\\_trt\\_cp & -2.230576\\\\\n", "\tBRD-K06592610\\_\\_VCAP\\_\\_trt\\_cp & BRD-K06592610\\_\\_VCAP\\_\\_trt\\_cp & -2.063635\\\\\n", "\tRDR-01440SC\\_\\_VCAP\\_\\_trt\\_cp & RDR-01440SC\\_\\_VCAP\\_\\_trt\\_cp & -2.042054\\\\\n", "\tBRD-K76691125\\_\\_VCAP\\_\\_trt\\_cp & BRD-K76691125\\_\\_VCAP\\_\\_trt\\_cp & -2.113669\\\\\n", "\ttubacin\\_\\_VCAP\\_\\_trt\\_cp & tubacin\\_\\_VCAP\\_\\_trt\\_cp & -3.499640\\\\\n", "\tBRD-K47512679\\_\\_NPC\\_\\_trt\\_cp & BRD-K47512679\\_\\_NPC\\_\\_trt\\_cp & -2.032956\\\\\n", "\tBRD-K05353139\\_\\_HT29\\_\\_trt\\_cp & BRD-K05353139\\_\\_HT29\\_\\_trt\\_cp & -2.013206\\\\\n", "\tBRD-K48598367\\_\\_NEU\\_\\_trt\\_cp & BRD-K48598367\\_\\_NEU\\_\\_trt\\_cp & -2.556500\\\\\n", "\tSA-419083\\_\\_NPC\\_\\_trt\\_cp & SA-419083\\_\\_NPC\\_\\_trt\\_cp & -2.028479\\\\\n", "\tBRD-K28772322\\_\\_VCAP\\_\\_trt\\_cp & BRD-K28772322\\_\\_VCAP\\_\\_trt\\_cp & -2.263741\\\\\n", "\tnocodazole\\_\\_FIBRNPC\\_\\_trt\\_cp & nocodazole\\_\\_FIBRNPC\\_\\_trt\\_cp & -2.172350\\\\\n", "\tAVA\\_\\_HA1E\\_\\_trt\\_cp & AVA\\_\\_HA1E\\_\\_trt\\_cp & -2.028199\\\\\n", "\\end{tabular}\n", "\n", "\\item[\\$ISL1] A data.frame: 197 × 2\n", "\\begin{tabular}{r|ll}\n", " & drug & zscore\\\\\n", " & & \\\\\n", "\\hline\n", "\tBRD-K26684619\\_\\_CD34\\_\\_trt\\_cp & BRD-K26684619\\_\\_CD34\\_\\_trt\\_cp & -2.040950\\\\\n", "\tBRD-A51929314\\_\\_HA1E\\_\\_trt\\_cp & BRD-A51929314\\_\\_HA1E\\_\\_trt\\_cp & -2.227154\\\\\n", "\tMRS-1845\\_\\_HCC515\\_\\_trt\\_cp & MRS-1845\\_\\_HCC515\\_\\_trt\\_cp & -2.417191\\\\\n", "\tmelperone\\_\\_HCC515\\_\\_trt\\_cp & melperone\\_\\_HCC515\\_\\_trt\\_cp & -2.385237\\\\\n", "\tFCCP\\_\\_HCC515\\_\\_trt\\_cp & FCCP\\_\\_HCC515\\_\\_trt\\_cp & -2.176191\\\\\n", "\tBCL2-inhibitor\\_\\_VCAP\\_\\_trt\\_cp & BCL2-inhibitor\\_\\_VCAP\\_\\_trt\\_cp & -2.520154\\\\\n", "\tubenimex\\_\\_VCAP\\_\\_trt\\_cp & ubenimex\\_\\_VCAP\\_\\_trt\\_cp & -2.167702\\\\\n", "\tepitestosterone\\_\\_VCAP\\_\\_trt\\_cp & epitestosterone\\_\\_VCAP\\_\\_trt\\_cp & -2.142600\\\\\n", "\tprocainamide\\_\\_VCAP\\_\\_trt\\_cp & procainamide\\_\\_VCAP\\_\\_trt\\_cp & -2.136900\\\\\n", "\tanagrelide\\_\\_HA1E\\_\\_trt\\_cp & anagrelide\\_\\_HA1E\\_\\_trt\\_cp & -2.888882\\\\\n", "\tbithionol\\_\\_HCC515\\_\\_trt\\_cp & bithionol\\_\\_HCC515\\_\\_trt\\_cp & -2.335168\\\\\n", "\tGW-1929\\_\\_VCAP\\_\\_trt\\_cp & GW-1929\\_\\_VCAP\\_\\_trt\\_cp & -3.890623\\\\\n", "\tCMPD-1\\_\\_A375\\_\\_trt\\_cp & CMPD-1\\_\\_A375\\_\\_trt\\_cp & -2.118605\\\\\n", "\tST-638\\_\\_HA1E\\_\\_trt\\_cp & ST-638\\_\\_HA1E\\_\\_trt\\_cp & -2.139165\\\\\n", "\tfluocinolone-acetonide\\_\\_HT29\\_\\_trt\\_cp & fluocinolone-acetonide\\_\\_HT29\\_\\_trt\\_cp & -2.311850\\\\\n", "\tmitoxantrone\\_\\_HT29\\_\\_trt\\_cp & mitoxantrone\\_\\_HT29\\_\\_trt\\_cp & -2.173384\\\\\n", "\tL-168049\\_\\_VCAP\\_\\_trt\\_cp & L-168049\\_\\_VCAP\\_\\_trt\\_cp & -2.498789\\\\\n", "\tBX-795\\_\\_HT29\\_\\_trt\\_cp & BX-795\\_\\_HT29\\_\\_trt\\_cp & -2.146887\\\\\n", "\tcucurbitacin-i\\_\\_MCF7\\_\\_trt\\_cp & cucurbitacin-i\\_\\_MCF7\\_\\_trt\\_cp & -2.131572\\\\\n", "\tCT-200783\\_\\_VCAP\\_\\_trt\\_cp & CT-200783\\_\\_VCAP\\_\\_trt\\_cp & -2.346538\\\\\n", "\tBRD-K60870698\\_\\_A375\\_\\_trt\\_cp & BRD-K60870698\\_\\_A375\\_\\_trt\\_cp & -2.611861\\\\\n", "\tBRD-K84203638\\_\\_A375\\_\\_trt\\_cp & BRD-K84203638\\_\\_A375\\_\\_trt\\_cp & -2.241982\\\\\n", "\tBRD-K05153001\\_\\_A549\\_\\_trt\\_cp & BRD-K05153001\\_\\_A549\\_\\_trt\\_cp & -2.140815\\\\\n", "\tBRD-K85275009\\_\\_A549\\_\\_trt\\_cp & BRD-K85275009\\_\\_A549\\_\\_trt\\_cp & -4.711900\\\\\n", "\tBRD-K05402890\\_\\_HA1E\\_\\_trt\\_cp & BRD-K05402890\\_\\_HA1E\\_\\_trt\\_cp & -2.309873\\\\\n", "\tBRD-A58924247\\_\\_HT29\\_\\_trt\\_cp & BRD-A58924247\\_\\_HT29\\_\\_trt\\_cp & -2.229404\\\\\n", "\tBRD-K91691979\\_\\_PC3\\_\\_trt\\_cp & BRD-K91691979\\_\\_PC3\\_\\_trt\\_cp & -2.309459\\\\\n", "\tBRD-K19735876\\_\\_A375\\_\\_trt\\_cp & BRD-K19735876\\_\\_A375\\_\\_trt\\_cp & -2.083350\\\\\n", "\tBRD-A21406558\\_\\_MCF7\\_\\_trt\\_cp & BRD-A21406558\\_\\_MCF7\\_\\_trt\\_cp & -2.156250\\\\\n", "\tBRD-K07259155\\_\\_MCF7\\_\\_trt\\_cp & BRD-K07259155\\_\\_MCF7\\_\\_trt\\_cp & -2.299050\\\\\n", "\t⋮ & ⋮ & ⋮\\\\\n", "\tSR-12813\\_\\_NEU\\_\\_trt\\_cp & SR-12813\\_\\_NEU\\_\\_trt\\_cp & -2.061450\\\\\n", "\tLBH-589\\_\\_NEU\\_\\_trt\\_cp & LBH-589\\_\\_NEU\\_\\_trt\\_cp & -2.051542\\\\\n", "\tBG-1003\\_\\_NPC\\_\\_trt\\_cp & BG-1003\\_\\_NPC\\_\\_trt\\_cp & -2.050464\\\\\n", "\tLBH-589\\_\\_NPC\\_\\_trt\\_cp & LBH-589\\_\\_NPC\\_\\_trt\\_cp & -2.351810\\\\\n", "\tBG-1008\\_\\_NEU\\_\\_trt\\_cp & BG-1008\\_\\_NEU\\_\\_trt\\_cp & -2.506527\\\\\n", "\ttemozolomide\\_\\_NEU\\_\\_trt\\_cp & temozolomide\\_\\_NEU\\_\\_trt\\_cp & -2.358148\\\\\n", "\tBG-1005\\_\\_NEU\\_\\_trt\\_cp & BG-1005\\_\\_NEU\\_\\_trt\\_cp & -2.408175\\\\\n", "\tBG-1025\\_\\_NEU\\_\\_trt\\_cp & BG-1025\\_\\_NEU\\_\\_trt\\_cp & -2.330200\\\\\n", "\tC2-dihydroceramide\\_\\_NEU\\_\\_trt\\_cp & C2-dihydroceramide\\_\\_NEU\\_\\_trt\\_cp & -2.060200\\\\\n", "\tBG-1030\\_\\_NEU\\_\\_trt\\_cp & BG-1030\\_\\_NEU\\_\\_trt\\_cp & -2.047566\\\\\n", "\toxamflatin\\_\\_NPC\\_\\_trt\\_cp & oxamflatin\\_\\_NPC\\_\\_trt\\_cp & -2.670142\\\\\n", "\tBG-1029\\_\\_NPC\\_\\_trt\\_cp & BG-1029\\_\\_NPC\\_\\_trt\\_cp & -2.168213\\\\\n", "\tBG-1006\\_\\_NPC\\_\\_trt\\_cp & BG-1006\\_\\_NPC\\_\\_trt\\_cp & -2.664152\\\\\n", "\tBML-284\\_\\_NPC\\_\\_trt\\_cp & BML-284\\_\\_NPC\\_\\_trt\\_cp & -4.036828\\\\\n", "\tM-344\\_\\_NPC\\_\\_trt\\_cp & M-344\\_\\_NPC\\_\\_trt\\_cp & -2.041860\\\\\n", "\tBG-1025\\_\\_NPC\\_\\_trt\\_cp & BG-1025\\_\\_NPC\\_\\_trt\\_cp & -2.107575\\\\\n", "\tBG-1026\\_\\_NPC\\_\\_trt\\_cp & BG-1026\\_\\_NPC\\_\\_trt\\_cp & -2.440128\\\\\n", "\tNCH-51\\_\\_NPC\\_\\_trt\\_cp & NCH-51\\_\\_NPC\\_\\_trt\\_cp & -2.122013\\\\\n", "\tBG-1007\\_\\_NPC\\_\\_trt\\_cp & BG-1007\\_\\_NPC\\_\\_trt\\_cp & -2.229874\\\\\n", "\tBG-1028\\_\\_NPC\\_\\_trt\\_cp & BG-1028\\_\\_NPC\\_\\_trt\\_cp & -2.391268\\\\\n", "\tBG-1027\\_\\_NPC\\_\\_trt\\_cp & BG-1027\\_\\_NPC\\_\\_trt\\_cp & -2.334610\\\\\n", "\ttert-butylhydroquinone\\_\\_MCF7\\_\\_trt\\_cp & tert-butylhydroquinone\\_\\_MCF7\\_\\_trt\\_cp & -3.080953\\\\\n", "\tpanobinostat\\_\\_A375\\_\\_trt\\_cp & panobinostat\\_\\_A375\\_\\_trt\\_cp & -2.063759\\\\\n", "\tstaurosporine\\_\\_A375\\_\\_trt\\_cp & staurosporine\\_\\_A375\\_\\_trt\\_cp & -3.507200\\\\\n", "\tapicidin\\_\\_A375\\_\\_trt\\_cp & apicidin\\_\\_A375\\_\\_trt\\_cp & -2.681550\\\\\n", "\tBRD-K57064803\\_\\_MCF7\\_\\_trt\\_cp & BRD-K57064803\\_\\_MCF7\\_\\_trt\\_cp & -2.356925\\\\\n", "\talpha-tocopherol\\_\\_MCF7\\_\\_trt\\_cp & alpha-tocopherol\\_\\_MCF7\\_\\_trt\\_cp & -2.502400\\\\\n", "\tJMW-MITF1\\_\\_MCF7\\_\\_trt\\_cp & JMW-MITF1\\_\\_MCF7\\_\\_trt\\_cp & -2.199600\\\\\n", "\talpha-tocopherol\\_\\_PC3\\_\\_trt\\_cp & alpha-tocopherol\\_\\_PC3\\_\\_trt\\_cp & -2.310900\\\\\n", "\tbortezomib\\_\\_PC3\\_\\_trt\\_cp & bortezomib\\_\\_PC3\\_\\_trt\\_cp & -3.855000\\\\\n", "\\end{tabular}\n", "\n", "\\item[\\$HOXC5] A data.frame: 49 × 2\n", "\\begin{tabular}{r|ll}\n", " & drug & zscore\\\\\n", " & & \\\\\n", "\\hline\n", "\taminomethyltransferase\\_\\_HA1E\\_\\_trt\\_cp & aminomethyltransferase\\_\\_HA1E\\_\\_trt\\_cp & -2.349426\\\\\n", "\tARP-101\\_\\_HA1E\\_\\_trt\\_cp & ARP-101\\_\\_HA1E\\_\\_trt\\_cp & -2.420850\\\\\n", "\thomoharringtonine\\_\\_HA1E\\_\\_trt\\_cp & homoharringtonine\\_\\_HA1E\\_\\_trt\\_cp & -2.545411\\\\\n", "\tCFM-1571\\_\\_HCC515\\_\\_trt\\_cp & CFM-1571\\_\\_HCC515\\_\\_trt\\_cp & -2.027797\\\\\n", "\tapoptosis-activator-II\\_\\_HCC515\\_\\_trt\\_cp & apoptosis-activator-II\\_\\_HCC515\\_\\_trt\\_cp & -2.027338\\\\\n", "\tpuromycin\\_\\_VCAP\\_\\_trt\\_cp & puromycin\\_\\_VCAP\\_\\_trt\\_cp & -3.208967\\\\\n", "\tNSC-632839\\_\\_VCAP\\_\\_trt\\_cp & NSC-632839\\_\\_VCAP\\_\\_trt\\_cp & -2.437900\\\\\n", "\tNNC-711\\_\\_VCAP\\_\\_trt\\_cp & NNC-711\\_\\_VCAP\\_\\_trt\\_cp & -2.587158\\\\\n", "\tMG-132\\_\\_VCAP\\_\\_trt\\_cp & MG-132\\_\\_VCAP\\_\\_trt\\_cp & -2.497801\\\\\n", "\tRo-15-4513\\_\\_VCAP\\_\\_trt\\_cp & Ro-15-4513\\_\\_VCAP\\_\\_trt\\_cp & -2.462467\\\\\n", "\tR-59022\\_\\_HA1E\\_\\_trt\\_cp & R-59022\\_\\_HA1E\\_\\_trt\\_cp & -2.440392\\\\\n", "\tcucurbitacin-i\\_\\_MCF7\\_\\_trt\\_cp & cucurbitacin-i\\_\\_MCF7\\_\\_trt\\_cp & -2.504937\\\\\n", "\tSCH-79797\\_\\_MCF7\\_\\_trt\\_cp & SCH-79797\\_\\_MCF7\\_\\_trt\\_cp & -3.103155\\\\\n", "\tBRD-K19290969\\_\\_A549\\_\\_trt\\_cp & BRD-K19290969\\_\\_A549\\_\\_trt\\_cp & -2.442208\\\\\n", "\tBIX-02188\\_\\_VCAP\\_\\_trt\\_cp & BIX-02188\\_\\_VCAP\\_\\_trt\\_cp & -2.021193\\\\\n", "\tBRD-A98444709\\_\\_A549\\_\\_trt\\_cp & BRD-A98444709\\_\\_A549\\_\\_trt\\_cp & -2.181950\\\\\n", "\tBRD-K18726304\\_\\_MCF7\\_\\_trt\\_cp & BRD-K18726304\\_\\_MCF7\\_\\_trt\\_cp & -2.498750\\\\\n", "\ttoremifene\\_\\_MCF7\\_\\_trt\\_cp & toremifene\\_\\_MCF7\\_\\_trt\\_cp & -2.111762\\\\\n", "\tBRD-K32896438\\_\\_MCF7\\_\\_trt\\_cp & BRD-K32896438\\_\\_MCF7\\_\\_trt\\_cp & -2.568452\\\\\n", "\tRAN-27\\_\\_NEU\\_\\_trt\\_cp & RAN-27\\_\\_NEU\\_\\_trt\\_cp & -2.057970\\\\\n", "\tBRD-K44893543\\_\\_NEU\\_\\_trt\\_cp & BRD-K44893543\\_\\_NEU\\_\\_trt\\_cp & -2.403568\\\\\n", "\tcytochalasin-d\\_\\_MCF7\\_\\_trt\\_cp & cytochalasin-d\\_\\_MCF7\\_\\_trt\\_cp & -2.524929\\\\\n", "\tST-4029010\\_\\_NEU\\_\\_trt\\_cp & ST-4029010\\_\\_NEU\\_\\_trt\\_cp & -2.160550\\\\\n", "\tsorafenib\\_\\_VCAP\\_\\_trt\\_cp & sorafenib\\_\\_VCAP\\_\\_trt\\_cp & -2.387828\\\\\n", "\tBG-FA-0953\\_\\_VCAP\\_\\_trt\\_cp & BG-FA-0953\\_\\_VCAP\\_\\_trt\\_cp & -2.010978\\\\\n", "\tWYE-354\\_\\_ASC\\_\\_trt\\_cp & WYE-354\\_\\_ASC\\_\\_trt\\_cp & -2.030976\\\\\n", "\tWYE-125132\\_\\_MCF7\\_\\_trt\\_cp & WYE-125132\\_\\_MCF7\\_\\_trt\\_cp & -2.019033\\\\\n", "\tverrucarin-a\\_\\_NEU\\_\\_trt\\_cp & verrucarin-a\\_\\_NEU\\_\\_trt\\_cp & -2.535550\\\\\n", "\tmirin\\_\\_VCAP\\_\\_trt\\_cp & mirin\\_\\_VCAP\\_\\_trt\\_cp & -2.051119\\\\\n", "\tCGP-71683\\_\\_MCF7\\_\\_trt\\_cp & CGP-71683\\_\\_MCF7\\_\\_trt\\_cp & -2.191356\\\\\n", "\tNSC-663284\\_\\_PHH\\_\\_trt\\_cp & NSC-663284\\_\\_PHH\\_\\_trt\\_cp & -2.232050\\\\\n", "\tproadifen\\_\\_ASC\\_\\_trt\\_cp & proadifen\\_\\_ASC\\_\\_trt\\_cp & -2.171099\\\\\n", "\tanisomycin\\_\\_NEU\\_\\_trt\\_cp & anisomycin\\_\\_NEU\\_\\_trt\\_cp & -2.530992\\\\\n", "\tformoterol\\_\\_SKB\\_\\_trt\\_cp & formoterol\\_\\_SKB\\_\\_trt\\_cp & -2.052984\\\\\n", "\tFCCP\\_\\_MCF7\\_\\_trt\\_cp & FCCP\\_\\_MCF7\\_\\_trt\\_cp & -2.068842\\\\\n", "\tdiphenyleneiodonium\\_\\_MCF7\\_\\_trt\\_cp & diphenyleneiodonium\\_\\_MCF7\\_\\_trt\\_cp & -2.738179\\\\\n", "\tNSC-94258\\_\\_MCF7\\_\\_trt\\_cp & NSC-94258\\_\\_MCF7\\_\\_trt\\_cp & -2.348442\\\\\n", "\tSQ-22536\\_\\_NPC\\_\\_trt\\_cp & SQ-22536\\_\\_NPC\\_\\_trt\\_cp & -2.024650\\\\\n", "\tpyrvinium\\_\\_MCF7\\_\\_trt\\_cp & pyrvinium\\_\\_MCF7\\_\\_trt\\_cp & -2.287450\\\\\n", "\tBRD-K00835201\\_\\_NEU\\_\\_trt\\_cp & BRD-K00835201\\_\\_NEU\\_\\_trt\\_cp & -2.013800\\\\\n", "\tBRD-K75264577\\_\\_NEU\\_\\_trt\\_cp & BRD-K75264577\\_\\_NEU\\_\\_trt\\_cp & -2.051050\\\\\n", "\tBRD-K01477275\\_\\_NPC\\_\\_trt\\_cp & BRD-K01477275\\_\\_NPC\\_\\_trt\\_cp & -2.038408\\\\\n", "\tBRD-K02519835\\_\\_VCAP\\_\\_trt\\_cp & BRD-K02519835\\_\\_VCAP\\_\\_trt\\_cp & -2.148807\\\\\n", "\tmotesanib\\_\\_HS578T\\_\\_trt\\_cp & motesanib\\_\\_HS578T\\_\\_trt\\_cp & -2.047123\\\\\n", "\tSYK-inhibitor\\_\\_SKBR3\\_\\_trt\\_cp & SYK-inhibitor\\_\\_SKBR3\\_\\_trt\\_cp & -2.655849\\\\\n", "\tENMD-2076\\_\\_A375\\_\\_trt\\_cp & ENMD-2076\\_\\_A375\\_\\_trt\\_cp & -2.061680\\\\\n", "\tBRD-K99636700\\_\\_HCC515\\_\\_trt\\_cp & BRD-K99636700\\_\\_HCC515\\_\\_trt\\_cp & -2.166222\\\\\n", "\tapicidin\\_\\_HEPG2\\_\\_trt\\_cp & apicidin\\_\\_HEPG2\\_\\_trt\\_cp & -2.335700\\\\\n", "\tavrainvillamide-analog-4\\_\\_MCF7\\_\\_trt\\_cp & avrainvillamide-analog-4\\_\\_MCF7\\_\\_trt\\_cp & -2.152519\\\\\n", "\\end{tabular}\n", "\n", "\\end{description}\n" ], "text/markdown": [ "$VENTX\n", ": \n", "A data.frame: 80 × 2\n", "\n", "| | drug <chr> | zscore <dbl> |\n", "|---|---|---|\n", "| butoconazole__HCC515__trt_cp | butoconazole__HCC515__trt_cp | -2.043097 |\n", "| amcinonide__VCAP__trt_cp | amcinonide__VCAP__trt_cp | -2.013700 |\n", "| verteporfin__VCAP__trt_cp | verteporfin__VCAP__trt_cp | -2.372383 |\n", "| napelline__HT29__trt_cp | napelline__HT29__trt_cp | -2.024536 |\n", "| clioquinol__HT29__trt_cp | clioquinol__HT29__trt_cp | -2.086267 |\n", "| NS-3694__VCAP__trt_cp | NS-3694__VCAP__trt_cp | -2.178900 |\n", "| AS-605240__VCAP__trt_cp | AS-605240__VCAP__trt_cp | -2.451528 |\n", "| SJ-172550__VCAP__trt_cp | SJ-172550__VCAP__trt_cp | -2.893954 |\n", "| JAS07-005__VCAP__trt_cp | JAS07-005__VCAP__trt_cp | -2.086582 |\n", "| BRD-A38425832__MCF7__trt_cp | BRD-A38425832__MCF7__trt_cp | -2.438600 |\n", "| BRD-K32827536__PC3__trt_cp | BRD-K32827536__PC3__trt_cp | -2.027371 |\n", "| BRD-K48844671__PC3__trt_cp | BRD-K48844671__PC3__trt_cp | -2.115793 |\n", "| BRD-K23165181__VCAP__trt_cp | BRD-K23165181__VCAP__trt_cp | -2.151439 |\n", "| BRD-K58247702__VCAP__trt_cp | BRD-K58247702__VCAP__trt_cp | -2.014121 |\n", "| BRD-K70917163__VCAP__trt_cp | BRD-K70917163__VCAP__trt_cp | -2.195663 |\n", "| KU-C104140__A549__trt_cp | KU-C104140__A549__trt_cp | -2.076100 |\n", "| BRD-A11095214__MCF7__trt_cp | BRD-A11095214__MCF7__trt_cp | -2.200500 |\n", "| BRD-K33182644__MCF7__trt_cp | BRD-K33182644__MCF7__trt_cp | -2.137250 |\n", "| BRD-K98991361__A549__trt_cp | BRD-K98991361__A549__trt_cp | -2.161300 |\n", "| oxcarbazepine__MCF7__trt_cp | oxcarbazepine__MCF7__trt_cp | -2.080350 |\n", "| lansoprazole__VCAP__trt_cp | lansoprazole__VCAP__trt_cp | -2.672177 |\n", "| kitasamycin__VCAP__trt_cp | kitasamycin__VCAP__trt_cp | -2.771939 |\n", "| BRD-A16581344__A549__trt_cp | BRD-A16581344__A549__trt_cp | -2.207200 |\n", "| BRD-K88556033__A549__trt_cp | BRD-K88556033__A549__trt_cp | -2.038800 |\n", "| RAN-27__NEU__trt_cp | RAN-27__NEU__trt_cp | -2.076294 |\n", "| BRD-K44893543__NEU__trt_cp | BRD-K44893543__NEU__trt_cp | -2.608974 |\n", "| BRD-K58279162__NEU__trt_cp | BRD-K58279162__NEU__trt_cp | -2.688838 |\n", "| BRD-K14316227__NPC__trt_cp | BRD-K14316227__NPC__trt_cp | -2.204158 |\n", "| treprostinil__PHH__trt_cp | treprostinil__PHH__trt_cp | -2.756694 |\n", "| BRD-K82971429__PHH__trt_cp | BRD-K82971429__PHH__trt_cp | -2.028831 |\n", "| ⋮ | ⋮ | ⋮ |\n", "| NSC-663284__PHH__trt_cp | NSC-663284__PHH__trt_cp | -2.211250 |\n", "| zoxazolamine__PHH__trt_cp | zoxazolamine__PHH__trt_cp | -2.148100 |\n", "| nateglinide__PHH__trt_cp | nateglinide__PHH__trt_cp | -2.026000 |\n", "| LFM-A13__NEU__trt_cp | LFM-A13__NEU__trt_cp | -2.864500 |\n", "| BML-257__NEU__trt_cp | BML-257__NEU__trt_cp | -3.350300 |\n", "| lamotrigine__NEU__trt_cp | lamotrigine__NEU__trt_cp | -2.059334 |\n", "| IC-261__PHH__trt_cp | IC-261__PHH__trt_cp | -2.089171 |\n", "| L-701252__PHH__trt_cp | L-701252__PHH__trt_cp | -3.265500 |\n", "| mometasone__PHH__trt_cp | mometasone__PHH__trt_cp | -2.173689 |\n", "| scoulerine__PHH__trt_cp | scoulerine__PHH__trt_cp | -2.078122 |\n", "| dihydroergotamine__PHH__trt_cp | dihydroergotamine__PHH__trt_cp | -2.580976 |\n", "| dipyridamole__PHH__trt_cp | dipyridamole__PHH__trt_cp | -2.045686 |\n", "| tyrphostin-AG-825__MCF7__trt_cp | tyrphostin-AG-825__MCF7__trt_cp | -2.394913 |\n", "| rosmarinic-acid__NPC__trt_cp | rosmarinic-acid__NPC__trt_cp | -2.170692 |\n", "| amthamine__PHH__trt_cp | amthamine__PHH__trt_cp | -2.258550 |\n", "| NAN-190__PHH__trt_cp | NAN-190__PHH__trt_cp | -4.584300 |\n", "| BRD-K24053449__MCF7__trt_cp | BRD-K24053449__MCF7__trt_cp | -2.124968 |\n", "| BRD-K88278225__PC3__trt_cp | BRD-K88278225__PC3__trt_cp | -5.143122 |\n", "| BRD-K03358980__VCAP__trt_cp | BRD-K03358980__VCAP__trt_cp | -2.230576 |\n", "| BRD-K06592610__VCAP__trt_cp | BRD-K06592610__VCAP__trt_cp | -2.063635 |\n", "| RDR-01440SC__VCAP__trt_cp | RDR-01440SC__VCAP__trt_cp | -2.042054 |\n", "| BRD-K76691125__VCAP__trt_cp | BRD-K76691125__VCAP__trt_cp | -2.113669 |\n", "| tubacin__VCAP__trt_cp | tubacin__VCAP__trt_cp | -3.499640 |\n", "| BRD-K47512679__NPC__trt_cp | BRD-K47512679__NPC__trt_cp | -2.032956 |\n", "| BRD-K05353139__HT29__trt_cp | BRD-K05353139__HT29__trt_cp | -2.013206 |\n", "| BRD-K48598367__NEU__trt_cp | BRD-K48598367__NEU__trt_cp | -2.556500 |\n", "| SA-419083__NPC__trt_cp | SA-419083__NPC__trt_cp | -2.028479 |\n", "| BRD-K28772322__VCAP__trt_cp | BRD-K28772322__VCAP__trt_cp | -2.263741 |\n", "| nocodazole__FIBRNPC__trt_cp | nocodazole__FIBRNPC__trt_cp | -2.172350 |\n", "| AVA__HA1E__trt_cp | AVA__HA1E__trt_cp | -2.028199 |\n", "\n", "\n", "$ISL1\n", ": \n", "A data.frame: 197 × 2\n", "\n", "| | drug <chr> | zscore <dbl> |\n", "|---|---|---|\n", "| BRD-K26684619__CD34__trt_cp | BRD-K26684619__CD34__trt_cp | -2.040950 |\n", "| BRD-A51929314__HA1E__trt_cp | BRD-A51929314__HA1E__trt_cp | -2.227154 |\n", "| MRS-1845__HCC515__trt_cp | MRS-1845__HCC515__trt_cp | -2.417191 |\n", "| melperone__HCC515__trt_cp | melperone__HCC515__trt_cp | -2.385237 |\n", "| FCCP__HCC515__trt_cp | FCCP__HCC515__trt_cp | -2.176191 |\n", "| BCL2-inhibitor__VCAP__trt_cp | BCL2-inhibitor__VCAP__trt_cp | -2.520154 |\n", "| ubenimex__VCAP__trt_cp | ubenimex__VCAP__trt_cp | -2.167702 |\n", "| epitestosterone__VCAP__trt_cp | epitestosterone__VCAP__trt_cp | -2.142600 |\n", "| procainamide__VCAP__trt_cp | procainamide__VCAP__trt_cp | -2.136900 |\n", "| anagrelide__HA1E__trt_cp | anagrelide__HA1E__trt_cp | -2.888882 |\n", "| bithionol__HCC515__trt_cp | bithionol__HCC515__trt_cp | -2.335168 |\n", "| GW-1929__VCAP__trt_cp | GW-1929__VCAP__trt_cp | -3.890623 |\n", "| CMPD-1__A375__trt_cp | CMPD-1__A375__trt_cp | -2.118605 |\n", "| ST-638__HA1E__trt_cp | ST-638__HA1E__trt_cp | -2.139165 |\n", "| fluocinolone-acetonide__HT29__trt_cp | fluocinolone-acetonide__HT29__trt_cp | -2.311850 |\n", "| mitoxantrone__HT29__trt_cp | mitoxantrone__HT29__trt_cp | -2.173384 |\n", "| L-168049__VCAP__trt_cp | L-168049__VCAP__trt_cp | -2.498789 |\n", "| BX-795__HT29__trt_cp | BX-795__HT29__trt_cp | -2.146887 |\n", "| cucurbitacin-i__MCF7__trt_cp | cucurbitacin-i__MCF7__trt_cp | -2.131572 |\n", "| CT-200783__VCAP__trt_cp | CT-200783__VCAP__trt_cp | -2.346538 |\n", "| BRD-K60870698__A375__trt_cp | BRD-K60870698__A375__trt_cp | -2.611861 |\n", "| BRD-K84203638__A375__trt_cp | BRD-K84203638__A375__trt_cp | -2.241982 |\n", "| BRD-K05153001__A549__trt_cp | BRD-K05153001__A549__trt_cp | -2.140815 |\n", "| BRD-K85275009__A549__trt_cp | BRD-K85275009__A549__trt_cp | -4.711900 |\n", "| BRD-K05402890__HA1E__trt_cp | BRD-K05402890__HA1E__trt_cp | -2.309873 |\n", "| BRD-A58924247__HT29__trt_cp | BRD-A58924247__HT29__trt_cp | -2.229404 |\n", "| BRD-K91691979__PC3__trt_cp | BRD-K91691979__PC3__trt_cp | -2.309459 |\n", "| BRD-K19735876__A375__trt_cp | BRD-K19735876__A375__trt_cp | -2.083350 |\n", "| BRD-A21406558__MCF7__trt_cp | BRD-A21406558__MCF7__trt_cp | -2.156250 |\n", "| BRD-K07259155__MCF7__trt_cp | BRD-K07259155__MCF7__trt_cp | -2.299050 |\n", "| ⋮ | ⋮ | ⋮ |\n", "| SR-12813__NEU__trt_cp | SR-12813__NEU__trt_cp | -2.061450 |\n", "| LBH-589__NEU__trt_cp | LBH-589__NEU__trt_cp | -2.051542 |\n", "| BG-1003__NPC__trt_cp | BG-1003__NPC__trt_cp | -2.050464 |\n", "| LBH-589__NPC__trt_cp | LBH-589__NPC__trt_cp | -2.351810 |\n", "| BG-1008__NEU__trt_cp | BG-1008__NEU__trt_cp | -2.506527 |\n", "| temozolomide__NEU__trt_cp | temozolomide__NEU__trt_cp | -2.358148 |\n", "| BG-1005__NEU__trt_cp | BG-1005__NEU__trt_cp | -2.408175 |\n", "| BG-1025__NEU__trt_cp | BG-1025__NEU__trt_cp | -2.330200 |\n", "| C2-dihydroceramide__NEU__trt_cp | C2-dihydroceramide__NEU__trt_cp | -2.060200 |\n", "| BG-1030__NEU__trt_cp | BG-1030__NEU__trt_cp | -2.047566 |\n", "| oxamflatin__NPC__trt_cp | oxamflatin__NPC__trt_cp | -2.670142 |\n", "| BG-1029__NPC__trt_cp | BG-1029__NPC__trt_cp | -2.168213 |\n", "| BG-1006__NPC__trt_cp | BG-1006__NPC__trt_cp | -2.664152 |\n", "| BML-284__NPC__trt_cp | BML-284__NPC__trt_cp | -4.036828 |\n", "| M-344__NPC__trt_cp | M-344__NPC__trt_cp | -2.041860 |\n", "| BG-1025__NPC__trt_cp | BG-1025__NPC__trt_cp | -2.107575 |\n", "| BG-1026__NPC__trt_cp | BG-1026__NPC__trt_cp | -2.440128 |\n", "| NCH-51__NPC__trt_cp | NCH-51__NPC__trt_cp | -2.122013 |\n", "| BG-1007__NPC__trt_cp | BG-1007__NPC__trt_cp | -2.229874 |\n", "| BG-1028__NPC__trt_cp | BG-1028__NPC__trt_cp | -2.391268 |\n", "| BG-1027__NPC__trt_cp | BG-1027__NPC__trt_cp | -2.334610 |\n", "| tert-butylhydroquinone__MCF7__trt_cp | tert-butylhydroquinone__MCF7__trt_cp | -3.080953 |\n", "| panobinostat__A375__trt_cp | panobinostat__A375__trt_cp | -2.063759 |\n", "| staurosporine__A375__trt_cp | staurosporine__A375__trt_cp | -3.507200 |\n", "| apicidin__A375__trt_cp | apicidin__A375__trt_cp | -2.681550 |\n", "| BRD-K57064803__MCF7__trt_cp | BRD-K57064803__MCF7__trt_cp | -2.356925 |\n", "| alpha-tocopherol__MCF7__trt_cp | alpha-tocopherol__MCF7__trt_cp | -2.502400 |\n", "| JMW-MITF1__MCF7__trt_cp | JMW-MITF1__MCF7__trt_cp | -2.199600 |\n", "| alpha-tocopherol__PC3__trt_cp | alpha-tocopherol__PC3__trt_cp | -2.310900 |\n", "| bortezomib__PC3__trt_cp | bortezomib__PC3__trt_cp | -3.855000 |\n", "\n", "\n", "$HOXC5\n", ": \n", "A data.frame: 49 × 2\n", "\n", "| | drug <chr> | zscore <dbl> |\n", "|---|---|---|\n", "| aminomethyltransferase__HA1E__trt_cp | aminomethyltransferase__HA1E__trt_cp | -2.349426 |\n", "| ARP-101__HA1E__trt_cp | ARP-101__HA1E__trt_cp | -2.420850 |\n", "| homoharringtonine__HA1E__trt_cp | homoharringtonine__HA1E__trt_cp | -2.545411 |\n", "| CFM-1571__HCC515__trt_cp | CFM-1571__HCC515__trt_cp | -2.027797 |\n", "| apoptosis-activator-II__HCC515__trt_cp | apoptosis-activator-II__HCC515__trt_cp | -2.027338 |\n", "| puromycin__VCAP__trt_cp | puromycin__VCAP__trt_cp | -3.208967 |\n", "| NSC-632839__VCAP__trt_cp | NSC-632839__VCAP__trt_cp | -2.437900 |\n", "| NNC-711__VCAP__trt_cp | NNC-711__VCAP__trt_cp | -2.587158 |\n", "| MG-132__VCAP__trt_cp | MG-132__VCAP__trt_cp | -2.497801 |\n", "| Ro-15-4513__VCAP__trt_cp | Ro-15-4513__VCAP__trt_cp | -2.462467 |\n", "| R-59022__HA1E__trt_cp | R-59022__HA1E__trt_cp | -2.440392 |\n", "| cucurbitacin-i__MCF7__trt_cp | cucurbitacin-i__MCF7__trt_cp | -2.504937 |\n", "| SCH-79797__MCF7__trt_cp | SCH-79797__MCF7__trt_cp | -3.103155 |\n", "| BRD-K19290969__A549__trt_cp | BRD-K19290969__A549__trt_cp | -2.442208 |\n", "| BIX-02188__VCAP__trt_cp | BIX-02188__VCAP__trt_cp | -2.021193 |\n", "| BRD-A98444709__A549__trt_cp | BRD-A98444709__A549__trt_cp | -2.181950 |\n", "| BRD-K18726304__MCF7__trt_cp | BRD-K18726304__MCF7__trt_cp | -2.498750 |\n", "| toremifene__MCF7__trt_cp | toremifene__MCF7__trt_cp | -2.111762 |\n", "| BRD-K32896438__MCF7__trt_cp | BRD-K32896438__MCF7__trt_cp | -2.568452 |\n", "| RAN-27__NEU__trt_cp | RAN-27__NEU__trt_cp | -2.057970 |\n", "| BRD-K44893543__NEU__trt_cp | BRD-K44893543__NEU__trt_cp | -2.403568 |\n", "| cytochalasin-d__MCF7__trt_cp | cytochalasin-d__MCF7__trt_cp | -2.524929 |\n", "| ST-4029010__NEU__trt_cp | ST-4029010__NEU__trt_cp | -2.160550 |\n", "| sorafenib__VCAP__trt_cp | sorafenib__VCAP__trt_cp | -2.387828 |\n", "| BG-FA-0953__VCAP__trt_cp | BG-FA-0953__VCAP__trt_cp | -2.010978 |\n", "| WYE-354__ASC__trt_cp | WYE-354__ASC__trt_cp | -2.030976 |\n", "| WYE-125132__MCF7__trt_cp | WYE-125132__MCF7__trt_cp | -2.019033 |\n", "| verrucarin-a__NEU__trt_cp | verrucarin-a__NEU__trt_cp | -2.535550 |\n", "| mirin__VCAP__trt_cp | mirin__VCAP__trt_cp | -2.051119 |\n", "| CGP-71683__MCF7__trt_cp | CGP-71683__MCF7__trt_cp | -2.191356 |\n", "| NSC-663284__PHH__trt_cp | NSC-663284__PHH__trt_cp | -2.232050 |\n", "| proadifen__ASC__trt_cp | proadifen__ASC__trt_cp | -2.171099 |\n", "| anisomycin__NEU__trt_cp | anisomycin__NEU__trt_cp | -2.530992 |\n", "| formoterol__SKB__trt_cp | formoterol__SKB__trt_cp | -2.052984 |\n", "| FCCP__MCF7__trt_cp | FCCP__MCF7__trt_cp | -2.068842 |\n", "| diphenyleneiodonium__MCF7__trt_cp | diphenyleneiodonium__MCF7__trt_cp | -2.738179 |\n", "| NSC-94258__MCF7__trt_cp | NSC-94258__MCF7__trt_cp | -2.348442 |\n", "| SQ-22536__NPC__trt_cp | SQ-22536__NPC__trt_cp | -2.024650 |\n", "| pyrvinium__MCF7__trt_cp | pyrvinium__MCF7__trt_cp | -2.287450 |\n", "| BRD-K00835201__NEU__trt_cp | BRD-K00835201__NEU__trt_cp | -2.013800 |\n", "| BRD-K75264577__NEU__trt_cp | BRD-K75264577__NEU__trt_cp | -2.051050 |\n", "| BRD-K01477275__NPC__trt_cp | BRD-K01477275__NPC__trt_cp | -2.038408 |\n", "| BRD-K02519835__VCAP__trt_cp | BRD-K02519835__VCAP__trt_cp | -2.148807 |\n", "| motesanib__HS578T__trt_cp | motesanib__HS578T__trt_cp | -2.047123 |\n", "| SYK-inhibitor__SKBR3__trt_cp | SYK-inhibitor__SKBR3__trt_cp | -2.655849 |\n", "| ENMD-2076__A375__trt_cp | ENMD-2076__A375__trt_cp | -2.061680 |\n", "| BRD-K99636700__HCC515__trt_cp | BRD-K99636700__HCC515__trt_cp | -2.166222 |\n", "| apicidin__HEPG2__trt_cp | apicidin__HEPG2__trt_cp | -2.335700 |\n", "| avrainvillamide-analog-4__MCF7__trt_cp | avrainvillamide-analog-4__MCF7__trt_cp | -2.152519 |\n", "\n", "\n", "\n", "\n" ], "text/plain": [ "$VENTX\n", " drug\n", "butoconazole__HCC515__trt_cp butoconazole__HCC515__trt_cp\n", "amcinonide__VCAP__trt_cp amcinonide__VCAP__trt_cp\n", "verteporfin__VCAP__trt_cp verteporfin__VCAP__trt_cp\n", "napelline__HT29__trt_cp napelline__HT29__trt_cp\n", "clioquinol__HT29__trt_cp clioquinol__HT29__trt_cp\n", "NS-3694__VCAP__trt_cp NS-3694__VCAP__trt_cp\n", "AS-605240__VCAP__trt_cp AS-605240__VCAP__trt_cp\n", "SJ-172550__VCAP__trt_cp SJ-172550__VCAP__trt_cp\n", "JAS07-005__VCAP__trt_cp JAS07-005__VCAP__trt_cp\n", "BRD-A38425832__MCF7__trt_cp BRD-A38425832__MCF7__trt_cp\n", "BRD-K32827536__PC3__trt_cp BRD-K32827536__PC3__trt_cp\n", "BRD-K48844671__PC3__trt_cp BRD-K48844671__PC3__trt_cp\n", "BRD-K23165181__VCAP__trt_cp BRD-K23165181__VCAP__trt_cp\n", "BRD-K58247702__VCAP__trt_cp BRD-K58247702__VCAP__trt_cp\n", "BRD-K70917163__VCAP__trt_cp BRD-K70917163__VCAP__trt_cp\n", "KU-C104140__A549__trt_cp KU-C104140__A549__trt_cp\n", "BRD-A11095214__MCF7__trt_cp BRD-A11095214__MCF7__trt_cp\n", "BRD-K33182644__MCF7__trt_cp BRD-K33182644__MCF7__trt_cp\n", "BRD-K98991361__A549__trt_cp BRD-K98991361__A549__trt_cp\n", "oxcarbazepine__MCF7__trt_cp oxcarbazepine__MCF7__trt_cp\n", "lansoprazole__VCAP__trt_cp lansoprazole__VCAP__trt_cp\n", "kitasamycin__VCAP__trt_cp kitasamycin__VCAP__trt_cp\n", "BRD-A16581344__A549__trt_cp BRD-A16581344__A549__trt_cp\n", "BRD-K88556033__A549__trt_cp BRD-K88556033__A549__trt_cp\n", "RAN-27__NEU__trt_cp RAN-27__NEU__trt_cp\n", "BRD-K44893543__NEU__trt_cp BRD-K44893543__NEU__trt_cp\n", "BRD-K58279162__NEU__trt_cp BRD-K58279162__NEU__trt_cp\n", "BRD-K14316227__NPC__trt_cp BRD-K14316227__NPC__trt_cp\n", "treprostinil__PHH__trt_cp treprostinil__PHH__trt_cp\n", "BRD-K82971429__PHH__trt_cp BRD-K82971429__PHH__trt_cp\n", "BRD-K21672423__SKB__trt_cp BRD-K21672423__SKB__trt_cp\n", "BRD-K35568648__SKB__trt_cp BRD-K35568648__SKB__trt_cp\n", "BRD-K98731749__VCAP__trt_cp BRD-K98731749__VCAP__trt_cp\n", "BRD-K54159704__NEU__trt_cp BRD-K54159704__NEU__trt_cp\n", "BRD-A60386802__NPC__trt_cp BRD-A60386802__NPC__trt_cp\n", "BRD-K09460252__SKB__trt_cp BRD-K09460252__SKB__trt_cp\n", "BRD-A30083233__VCAP__trt_cp BRD-A30083233__VCAP__trt_cp\n", "BRD-A68274214__VCAP__trt_cp BRD-A68274214__VCAP__trt_cp\n", "BRD-K16180117__VCAP__trt_cp BRD-K16180117__VCAP__trt_cp\n", "parthenolide-(alternate-stereo)__VCAP__trt_cp parthenolide-(alternate-stereo)__VCAP__trt_cp\n", "BRD-K47764688__VCAP__trt_cp BRD-K47764688__VCAP__trt_cp\n", "BRD-K52914903__VCAP__trt_cp BRD-K52914903__VCAP__trt_cp\n", "SEW-05685__VCAP__trt_cp SEW-05685__VCAP__trt_cp\n", "BRD-K88542532__VCAP__trt_cp BRD-K88542532__VCAP__trt_cp\n", "BRD-A77577770__A549__trt_cp BRD-A77577770__A549__trt_cp\n", "EMF-BCA1-57__ASC__trt_cp EMF-BCA1-57__ASC__trt_cp\n", "acitretin__NEU__trt_cp acitretin__NEU__trt_cp\n", "mitotane__A549__trt_cp mitotane__A549__trt_cp\n", "aminopentamide__A549__trt_cp aminopentamide__A549__trt_cp\n", "probenecid__A549__trt_cp probenecid__A549__trt_cp\n", "NSC-663284__PHH__trt_cp NSC-663284__PHH__trt_cp\n", "zoxazolamine__PHH__trt_cp zoxazolamine__PHH__trt_cp\n", "nateglinide__PHH__trt_cp nateglinide__PHH__trt_cp\n", "LFM-A13__NEU__trt_cp LFM-A13__NEU__trt_cp\n", "BML-257__NEU__trt_cp BML-257__NEU__trt_cp\n", "lamotrigine__NEU__trt_cp lamotrigine__NEU__trt_cp\n", "IC-261__PHH__trt_cp IC-261__PHH__trt_cp\n", "L-701252__PHH__trt_cp L-701252__PHH__trt_cp\n", "mometasone__PHH__trt_cp mometasone__PHH__trt_cp\n", "scoulerine__PHH__trt_cp scoulerine__PHH__trt_cp\n", "dihydroergotamine__PHH__trt_cp dihydroergotamine__PHH__trt_cp\n", "dipyridamole__PHH__trt_cp dipyridamole__PHH__trt_cp\n", "tyrphostin-AG-825__MCF7__trt_cp tyrphostin-AG-825__MCF7__trt_cp\n", "rosmarinic-acid__NPC__trt_cp rosmarinic-acid__NPC__trt_cp\n", "amthamine__PHH__trt_cp amthamine__PHH__trt_cp\n", "NAN-190__PHH__trt_cp NAN-190__PHH__trt_cp\n", "BRD-K24053449__MCF7__trt_cp BRD-K24053449__MCF7__trt_cp\n", "BRD-K88278225__PC3__trt_cp BRD-K88278225__PC3__trt_cp\n", "BRD-K03358980__VCAP__trt_cp BRD-K03358980__VCAP__trt_cp\n", "BRD-K06592610__VCAP__trt_cp BRD-K06592610__VCAP__trt_cp\n", "RDR-01440SC__VCAP__trt_cp RDR-01440SC__VCAP__trt_cp\n", "BRD-K76691125__VCAP__trt_cp BRD-K76691125__VCAP__trt_cp\n", "tubacin__VCAP__trt_cp tubacin__VCAP__trt_cp\n", "BRD-K47512679__NPC__trt_cp BRD-K47512679__NPC__trt_cp\n", "BRD-K05353139__HT29__trt_cp BRD-K05353139__HT29__trt_cp\n", "BRD-K48598367__NEU__trt_cp BRD-K48598367__NEU__trt_cp\n", "SA-419083__NPC__trt_cp SA-419083__NPC__trt_cp\n", "BRD-K28772322__VCAP__trt_cp BRD-K28772322__VCAP__trt_cp\n", "nocodazole__FIBRNPC__trt_cp nocodazole__FIBRNPC__trt_cp\n", "AVA__HA1E__trt_cp AVA__HA1E__trt_cp\n", " zscore\n", "butoconazole__HCC515__trt_cp -2.043097\n", "amcinonide__VCAP__trt_cp -2.013700\n", "verteporfin__VCAP__trt_cp -2.372383\n", "napelline__HT29__trt_cp -2.024536\n", "clioquinol__HT29__trt_cp -2.086267\n", "NS-3694__VCAP__trt_cp -2.178900\n", "AS-605240__VCAP__trt_cp -2.451528\n", "SJ-172550__VCAP__trt_cp -2.893954\n", "JAS07-005__VCAP__trt_cp -2.086582\n", "BRD-A38425832__MCF7__trt_cp -2.438600\n", "BRD-K32827536__PC3__trt_cp -2.027371\n", "BRD-K48844671__PC3__trt_cp -2.115793\n", "BRD-K23165181__VCAP__trt_cp -2.151439\n", "BRD-K58247702__VCAP__trt_cp -2.014121\n", "BRD-K70917163__VCAP__trt_cp -2.195663\n", "KU-C104140__A549__trt_cp -2.076100\n", "BRD-A11095214__MCF7__trt_cp -2.200500\n", "BRD-K33182644__MCF7__trt_cp -2.137250\n", "BRD-K98991361__A549__trt_cp -2.161300\n", "oxcarbazepine__MCF7__trt_cp -2.080350\n", "lansoprazole__VCAP__trt_cp -2.672177\n", "kitasamycin__VCAP__trt_cp -2.771939\n", "BRD-A16581344__A549__trt_cp -2.207200\n", "BRD-K88556033__A549__trt_cp -2.038800\n", "RAN-27__NEU__trt_cp -2.076294\n", "BRD-K44893543__NEU__trt_cp -2.608974\n", "BRD-K58279162__NEU__trt_cp -2.688838\n", "BRD-K14316227__NPC__trt_cp -2.204158\n", "treprostinil__PHH__trt_cp -2.756694\n", "BRD-K82971429__PHH__trt_cp -2.028831\n", "BRD-K21672423__SKB__trt_cp -2.009029\n", "BRD-K35568648__SKB__trt_cp -2.132345\n", "BRD-K98731749__VCAP__trt_cp -2.255098\n", "BRD-K54159704__NEU__trt_cp -2.431950\n", "BRD-A60386802__NPC__trt_cp -2.105715\n", "BRD-K09460252__SKB__trt_cp -2.230373\n", "BRD-A30083233__VCAP__trt_cp -3.686601\n", "BRD-A68274214__VCAP__trt_cp -2.685372\n", "BRD-K16180117__VCAP__trt_cp -3.084749\n", "parthenolide-(alternate-stereo)__VCAP__trt_cp -2.591435\n", "BRD-K47764688__VCAP__trt_cp -2.465660\n", "BRD-K52914903__VCAP__trt_cp -2.128565\n", "SEW-05685__VCAP__trt_cp -2.412868\n", "BRD-K88542532__VCAP__trt_cp -2.193973\n", "BRD-A77577770__A549__trt_cp -2.333757\n", "EMF-BCA1-57__ASC__trt_cp -2.248311\n", "acitretin__NEU__trt_cp -2.018050\n", "mitotane__A549__trt_cp -2.225927\n", "aminopentamide__A549__trt_cp -2.421756\n", "probenecid__A549__trt_cp -2.769047\n", "NSC-663284__PHH__trt_cp -2.211250\n", "zoxazolamine__PHH__trt_cp -2.148100\n", "nateglinide__PHH__trt_cp -2.026000\n", "LFM-A13__NEU__trt_cp -2.864500\n", "BML-257__NEU__trt_cp -3.350300\n", "lamotrigine__NEU__trt_cp -2.059334\n", "IC-261__PHH__trt_cp -2.089171\n", "L-701252__PHH__trt_cp -3.265500\n", "mometasone__PHH__trt_cp -2.173689\n", "scoulerine__PHH__trt_cp -2.078122\n", "dihydroergotamine__PHH__trt_cp -2.580976\n", "dipyridamole__PHH__trt_cp -2.045686\n", "tyrphostin-AG-825__MCF7__trt_cp -2.394913\n", "rosmarinic-acid__NPC__trt_cp -2.170692\n", "amthamine__PHH__trt_cp -2.258550\n", "NAN-190__PHH__trt_cp -4.584300\n", "BRD-K24053449__MCF7__trt_cp -2.124968\n", "BRD-K88278225__PC3__trt_cp -5.143122\n", "BRD-K03358980__VCAP__trt_cp -2.230576\n", "BRD-K06592610__VCAP__trt_cp -2.063635\n", "RDR-01440SC__VCAP__trt_cp -2.042054\n", "BRD-K76691125__VCAP__trt_cp -2.113669\n", "tubacin__VCAP__trt_cp -3.499640\n", "BRD-K47512679__NPC__trt_cp -2.032956\n", "BRD-K05353139__HT29__trt_cp -2.013206\n", "BRD-K48598367__NEU__trt_cp -2.556500\n", "SA-419083__NPC__trt_cp -2.028479\n", "BRD-K28772322__VCAP__trt_cp -2.263741\n", "nocodazole__FIBRNPC__trt_cp -2.172350\n", "AVA__HA1E__trt_cp -2.028199\n", "\n", "$ISL1\n", " drug\n", "BRD-K26684619__CD34__trt_cp BRD-K26684619__CD34__trt_cp\n", "BRD-A51929314__HA1E__trt_cp BRD-A51929314__HA1E__trt_cp\n", "MRS-1845__HCC515__trt_cp MRS-1845__HCC515__trt_cp\n", "melperone__HCC515__trt_cp melperone__HCC515__trt_cp\n", "FCCP__HCC515__trt_cp FCCP__HCC515__trt_cp\n", "BCL2-inhibitor__VCAP__trt_cp BCL2-inhibitor__VCAP__trt_cp\n", "ubenimex__VCAP__trt_cp ubenimex__VCAP__trt_cp\n", "epitestosterone__VCAP__trt_cp epitestosterone__VCAP__trt_cp\n", "procainamide__VCAP__trt_cp procainamide__VCAP__trt_cp\n", "anagrelide__HA1E__trt_cp anagrelide__HA1E__trt_cp\n", "bithionol__HCC515__trt_cp bithionol__HCC515__trt_cp\n", "GW-1929__VCAP__trt_cp GW-1929__VCAP__trt_cp\n", "CMPD-1__A375__trt_cp CMPD-1__A375__trt_cp\n", "ST-638__HA1E__trt_cp ST-638__HA1E__trt_cp\n", "fluocinolone-acetonide__HT29__trt_cp fluocinolone-acetonide__HT29__trt_cp\n", "mitoxantrone__HT29__trt_cp mitoxantrone__HT29__trt_cp\n", "L-168049__VCAP__trt_cp L-168049__VCAP__trt_cp\n", "BX-795__HT29__trt_cp BX-795__HT29__trt_cp\n", "cucurbitacin-i__MCF7__trt_cp cucurbitacin-i__MCF7__trt_cp\n", "CT-200783__VCAP__trt_cp CT-200783__VCAP__trt_cp\n", "BRD-K60870698__A375__trt_cp BRD-K60870698__A375__trt_cp\n", "BRD-K84203638__A375__trt_cp BRD-K84203638__A375__trt_cp\n", "BRD-K05153001__A549__trt_cp BRD-K05153001__A549__trt_cp\n", "BRD-K85275009__A549__trt_cp BRD-K85275009__A549__trt_cp\n", "BRD-K05402890__HA1E__trt_cp BRD-K05402890__HA1E__trt_cp\n", "BRD-A58924247__HT29__trt_cp BRD-A58924247__HT29__trt_cp\n", "BRD-K91691979__PC3__trt_cp BRD-K91691979__PC3__trt_cp\n", "BRD-K19735876__A375__trt_cp BRD-K19735876__A375__trt_cp\n", "BRD-A21406558__MCF7__trt_cp BRD-A21406558__MCF7__trt_cp\n", "BRD-K07259155__MCF7__trt_cp BRD-K07259155__MCF7__trt_cp\n", "BRD-K66884694__MCF7__trt_cp BRD-K66884694__MCF7__trt_cp\n", "BRD-K44366801__VCAP__trt_cp BRD-K44366801__VCAP__trt_cp\n", "BRD-K66884694__VCAP__trt_cp BRD-K66884694__VCAP__trt_cp\n", "BRD-K97936712__VCAP__trt_cp BRD-K97936712__VCAP__trt_cp\n", "BRD-K43267173__A549__trt_cp BRD-K43267173__A549__trt_cp\n", "BRD-K36354764__MCF7__trt_cp BRD-K36354764__MCF7__trt_cp\n", "BRD-K69516039__MCF7__trt_cp BRD-K69516039__MCF7__trt_cp\n", "BRD-K89224880__VCAP__trt_cp BRD-K89224880__VCAP__trt_cp\n", "BRD-K31600199__A549__trt_cp BRD-K31600199__A549__trt_cp\n", "BRD-K96213252__PC3__trt_cp BRD-K96213252__PC3__trt_cp\n", "BRD-K01265221__VCAP__trt_cp BRD-K01265221__VCAP__trt_cp\n", "BRD-K49403449__VCAP__trt_cp BRD-K49403449__VCAP__trt_cp\n", "doxylamine__MCF7__trt_cp doxylamine__MCF7__trt_cp\n", "BRD-K02223034__A549__trt_cp BRD-K02223034__A549__trt_cp\n", "BRD-K25731886__A549__trt_cp BRD-K25731886__A549__trt_cp\n", "alvocidib__A549__trt_cp alvocidib__A549__trt_cp\n", "BRD-K04534322__NEU__trt_cp BRD-K04534322__NEU__trt_cp\n", "doxercalciferol__NEU__trt_cp doxercalciferol__NEU__trt_cp\n", "BRD-K25731886__NEU__trt_cp BRD-K25731886__NEU__trt_cp\n", "fludarabine__NEU__trt_cp fludarabine__NEU__trt_cp\n", "vorinostat__NEU__trt_cp vorinostat__NEU__trt_cp\n", "BRD-K98731749__NEU__trt_cp BRD-K98731749__NEU__trt_cp\n", "HU-211__NPC__trt_cp HU-211__NPC__trt_cp\n", "panobinostat__NPC__trt_cp panobinostat__NPC__trt_cp\n", "MD-II-038__NPC__trt_cp MD-II-038__NPC__trt_cp\n", "vorinostat__NPC__trt_cp vorinostat__NPC__trt_cp\n", "BRD-K36767861__PHH__trt_cp BRD-K36767861__PHH__trt_cp\n", "BRD-K76926998__PHH__trt_cp BRD-K76926998__PHH__trt_cp\n", "BRD-K02223034__SKB__trt_cp BRD-K02223034__SKB__trt_cp\n", "SA-1447005__VCAP__trt_cp SA-1447005__VCAP__trt_cp\n", "KM-01366__A549__trt_cp KM-01366__A549__trt_cp\n", "cilomilast__A549__trt_cp cilomilast__A549__trt_cp\n", "STOCK1S-03920__MCF7__trt_cp STOCK1S-03920__MCF7__trt_cp\n", "BRD-A68274214__NEU__trt_cp BRD-A68274214__NEU__trt_cp\n", "F-1061-0166__NEU__trt_cp F-1061-0166__NEU__trt_cp\n", "danusertib__NEU__trt_cp danusertib__NEU__trt_cp\n", "daunorubicin__NEU__trt_cp daunorubicin__NEU__trt_cp\n", "BRD-K03176945__NPC__trt_cp BRD-K03176945__NPC__trt_cp\n", "daunorubicin__NPC__trt_cp daunorubicin__NPC__trt_cp\n", "YM-155__NPC__trt_cp YM-155__NPC__trt_cp\n", "BRD-K18163752__VCAP__trt_cp BRD-K18163752__VCAP__trt_cp\n", "parthenolide-(alternate-stereo)__VCAP__trt_cp parthenolide-(alternate-stereo)__VCAP__trt_cp\n", "fenretinide__A549__trt_cp fenretinide__A549__trt_cp\n", "EI-231__NEU__trt_cp EI-231__NEU__trt_cp\n", "STK-397047__NEU__trt_cp STK-397047__NEU__trt_cp\n", "HO-013__NEU__trt_cp HO-013__NEU__trt_cp\n", "SB-590885__NPC__trt_cp SB-590885__NPC__trt_cp\n", "A-443644__NPC__trt_cp A-443644__NPC__trt_cp\n", "crizotinib__NPC__trt_cp crizotinib__NPC__trt_cp\n", "SB-239063__NPC__trt_cp SB-239063__NPC__trt_cp\n", "fenretinide__NPC__trt_cp fenretinide__NPC__trt_cp\n", "WZ-3105__NPC__trt_cp WZ-3105__NPC__trt_cp\n", "torin-2__PHH__trt_cp torin-2__PHH__trt_cp\n", "linifanib__PHH__trt_cp linifanib__PHH__trt_cp\n", "BRD-K07061353__VCAP__trt_cp BRD-K07061353__VCAP__trt_cp\n", "mitotane__A549__trt_cp mitotane__A549__trt_cp\n", "nocodazole__NPC__trt_cp nocodazole__NPC__trt_cp\n", "penfluridol__NPC__trt_cp penfluridol__NPC__trt_cp\n", "podophyllotoxin__NPC__trt_cp podophyllotoxin__NPC__trt_cp\n", "butoconazole__PHH__trt_cp butoconazole__PHH__trt_cp\n", "vinblastine__PHH__trt_cp vinblastine__PHH__trt_cp\n", "paroxetine__PHH__trt_cp paroxetine__PHH__trt_cp\n", "dicyclohexylurea__SKB__trt_cp dicyclohexylurea__SKB__trt_cp\n", "anisomycin__ASC__trt_cp anisomycin__ASC__trt_cp\n", "LFM-A13__NEU__trt_cp LFM-A13__NEU__trt_cp\n", "bisindolylmaleimide-ix__NEU__trt_cp bisindolylmaleimide-ix__NEU__trt_cp\n", "BML-257__NEU__trt_cp BML-257__NEU__trt_cp\n", "caffeic-acid__NEU__trt_cp caffeic-acid__NEU__trt_cp\n", "BRD-K93541117__NEU__trt_cp BRD-K93541117__NEU__trt_cp\n", "teniposide__NPC__trt_cp teniposide__NPC__trt_cp\n", "aminopurvalanol-a__NPC__trt_cp aminopurvalanol-a__NPC__trt_cp\n", "dextromethorphan__NPC__trt_cp dextromethorphan__NPC__trt_cp\n", "LY-2183240__NPC__trt_cp LY-2183240__NPC__trt_cp\n", "methyl-2,5-dihydroxycinnamate__NPC__trt_cp methyl-2,5-dihydroxycinnamate__NPC__trt_cp\n", "mocimycin__A549__trt_cp mocimycin__A549__trt_cp\n", "calycanthine__A549__trt_cp calycanthine__A549__trt_cp\n", "L-701252__ASC__trt_cp L-701252__ASC__trt_cp\n", "BMY-14802__NPC__trt_cp BMY-14802__NPC__trt_cp\n", "KF-38789__NPC__trt_cp KF-38789__NPC__trt_cp\n", "ryuvidine__NPC__trt_cp ryuvidine__NPC__trt_cp\n", "ER-27319__NPC__trt_cp ER-27319__NPC__trt_cp\n", "SYK-inhibitor__NPC__trt_cp SYK-inhibitor__NPC__trt_cp\n", "SB-431542__NPC__trt_cp SB-431542__NPC__trt_cp\n", "BMY-14802__PHH__trt_cp BMY-14802__PHH__trt_cp\n", "ER-27319__PHH__trt_cp ER-27319__PHH__trt_cp\n", "milrinone__PHH__trt_cp milrinone__PHH__trt_cp\n", "CS-110266__ASC__trt_cp CS-110266__ASC__trt_cp\n", "gitoxigenin__NPC__trt_cp gitoxigenin__NPC__trt_cp\n", "cymarin__NPC__trt_cp cymarin__NPC__trt_cp\n", "amiodarone__PHH__trt_cp amiodarone__PHH__trt_cp\n", "tranilast__PHH__trt_cp tranilast__PHH__trt_cp\n", "DMeOB__PHH__trt_cp DMeOB__PHH__trt_cp\n", "DCEBIO__PHH__trt_cp DCEBIO__PHH__trt_cp\n", "hexamethyleneamiloride__PHH__trt_cp hexamethyleneamiloride__PHH__trt_cp\n", "EMF-bca1-16__VCAP__trt_cp EMF-bca1-16__VCAP__trt_cp\n", "LY-2140023__VCAP__trt_cp LY-2140023__VCAP__trt_cp\n", "aminohippuric-acid__PC3__trt_cp aminohippuric-acid__PC3__trt_cp\n", "triphenyl-tin__HA1E__trt_cp triphenyl-tin__HA1E__trt_cp\n", "tributyltin__HA1E__trt_cp tributyltin__HA1E__trt_cp\n", "BRD-K86671899__A375__trt_cp BRD-K86671899__A375__trt_cp\n", "BRD-K23985857__HT29__trt_cp BRD-K23985857__HT29__trt_cp\n", "BRD-K62242359__HT29__trt_cp BRD-K62242359__HT29__trt_cp\n", "BRD-K90734091__HT29__trt_cp BRD-K90734091__HT29__trt_cp\n", "BRD-K00381581__NEU__trt_cp BRD-K00381581__NEU__trt_cp\n", "BRD-K38294617__NEU__trt_cp BRD-K38294617__NEU__trt_cp\n", "BRD-K48673964__NEU__trt_cp BRD-K48673964__NEU__trt_cp\n", "BRD-K88822846__NEU__trt_cp BRD-K88822846__NEU__trt_cp\n", "BRD-K86048057__NPC__trt_cp BRD-K86048057__NPC__trt_cp\n", "BRD-K29423519__A549__trt_cp BRD-K29423519__A549__trt_cp\n", "BRD-K73276569__A549__trt_cp BRD-K73276569__A549__trt_cp\n", "BRD-K15524596__NEU__trt_cp BRD-K15524596__NEU__trt_cp\n", "BRD-K79532217__NEU__trt_cp BRD-K79532217__NEU__trt_cp\n", "BRD-K68504618__NPC__trt_cp BRD-K68504618__NPC__trt_cp\n", "BRD-K80169513__NPC__trt_cp BRD-K80169513__NPC__trt_cp\n", "BRD-K81408913__NPC__trt_cp BRD-K81408913__NPC__trt_cp\n", "BRD-K85205404__NPC__trt_cp BRD-K85205404__NPC__trt_cp\n", "BRD-K36620425__VCAP__trt_cp BRD-K36620425__VCAP__trt_cp\n", "BRD-K18545493__VCAP__trt_cp BRD-K18545493__VCAP__trt_cp\n", "BRD-K97255584__VCAP__trt_cp BRD-K97255584__VCAP__trt_cp\n", "peruvoside__VCAP__trt_cp peruvoside__VCAP__trt_cp\n", "lanatoside-c__VCAP__trt_cp lanatoside-c__VCAP__trt_cp\n", "BRD-K34314104__VCAP__trt_cp BRD-K34314104__VCAP__trt_cp\n", "BRD-K26510616__PC3__trt_cp BRD-K26510616__PC3__trt_cp\n", "QL-X-138__MCF10A__trt_cp QL-X-138__MCF10A__trt_cp\n", "PD-0325901__BT20__trt_cp PD-0325901__BT20__trt_cp\n", "ON-01910__BT20__trt_cp ON-01910__BT20__trt_cp\n", "SA-1925610__MCF7__trt_cp SA-1925610__MCF7__trt_cp\n", "SA-3676__NKDBA__trt_cp SA-3676__NKDBA__trt_cp\n", "SA-1459213__MCF7__trt_cp SA-1459213__MCF7__trt_cp\n", "BRD-A12426960__FIBRNPC__trt_cp BRD-A12426960__FIBRNPC__trt_cp\n", "ephedrine__FIBRNPC__trt_cp ephedrine__FIBRNPC__trt_cp\n", "6-nitrodopamine__FIBRNPC__trt_cp 6-nitrodopamine__FIBRNPC__trt_cp\n", "BRD-K19653414__FIBRNPC__trt_cp BRD-K19653414__FIBRNPC__trt_cp\n", "n-bromoacetyltryptamine__FIBRNPC__trt_cp n-bromoacetyltryptamine__FIBRNPC__trt_cp\n", "BRD-A42610307__NEU__trt_cp BRD-A42610307__NEU__trt_cp\n", "BRD-A86146706__NEU__trt_cp BRD-A86146706__NEU__trt_cp\n", "BG-1003__NEU__trt_cp BG-1003__NEU__trt_cp\n", "SR-12813__NEU__trt_cp SR-12813__NEU__trt_cp\n", "LBH-589__NEU__trt_cp LBH-589__NEU__trt_cp\n", "BG-1003__NPC__trt_cp BG-1003__NPC__trt_cp\n", "LBH-589__NPC__trt_cp LBH-589__NPC__trt_cp\n", "BG-1008__NEU__trt_cp BG-1008__NEU__trt_cp\n", "temozolomide__NEU__trt_cp temozolomide__NEU__trt_cp\n", "BG-1005__NEU__trt_cp BG-1005__NEU__trt_cp\n", "BG-1025__NEU__trt_cp BG-1025__NEU__trt_cp\n", "C2-dihydroceramide__NEU__trt_cp C2-dihydroceramide__NEU__trt_cp\n", "BG-1030__NEU__trt_cp BG-1030__NEU__trt_cp\n", "oxamflatin__NPC__trt_cp oxamflatin__NPC__trt_cp\n", "BG-1029__NPC__trt_cp BG-1029__NPC__trt_cp\n", "BG-1006__NPC__trt_cp BG-1006__NPC__trt_cp\n", "BML-284__NPC__trt_cp BML-284__NPC__trt_cp\n", "M-344__NPC__trt_cp M-344__NPC__trt_cp\n", "BG-1025__NPC__trt_cp BG-1025__NPC__trt_cp\n", "BG-1026__NPC__trt_cp BG-1026__NPC__trt_cp\n", "NCH-51__NPC__trt_cp NCH-51__NPC__trt_cp\n", "BG-1007__NPC__trt_cp BG-1007__NPC__trt_cp\n", "BG-1028__NPC__trt_cp BG-1028__NPC__trt_cp\n", "BG-1027__NPC__trt_cp BG-1027__NPC__trt_cp\n", "tert-butylhydroquinone__MCF7__trt_cp tert-butylhydroquinone__MCF7__trt_cp\n", "panobinostat__A375__trt_cp panobinostat__A375__trt_cp\n", "staurosporine__A375__trt_cp staurosporine__A375__trt_cp\n", "apicidin__A375__trt_cp apicidin__A375__trt_cp\n", "BRD-K57064803__MCF7__trt_cp BRD-K57064803__MCF7__trt_cp\n", "alpha-tocopherol__MCF7__trt_cp alpha-tocopherol__MCF7__trt_cp\n", "JMW-MITF1__MCF7__trt_cp JMW-MITF1__MCF7__trt_cp\n", "alpha-tocopherol__PC3__trt_cp alpha-tocopherol__PC3__trt_cp\n", "bortezomib__PC3__trt_cp bortezomib__PC3__trt_cp\n", " zscore\n", "BRD-K26684619__CD34__trt_cp -2.040950\n", "BRD-A51929314__HA1E__trt_cp -2.227154\n", "MRS-1845__HCC515__trt_cp -2.417191\n", "melperone__HCC515__trt_cp -2.385237\n", "FCCP__HCC515__trt_cp -2.176191\n", "BCL2-inhibitor__VCAP__trt_cp -2.520154\n", "ubenimex__VCAP__trt_cp -2.167702\n", "epitestosterone__VCAP__trt_cp -2.142600\n", "procainamide__VCAP__trt_cp -2.136900\n", "anagrelide__HA1E__trt_cp -2.888882\n", "bithionol__HCC515__trt_cp -2.335168\n", "GW-1929__VCAP__trt_cp -3.890623\n", "CMPD-1__A375__trt_cp -2.118605\n", "ST-638__HA1E__trt_cp -2.139165\n", "fluocinolone-acetonide__HT29__trt_cp -2.311850\n", "mitoxantrone__HT29__trt_cp -2.173384\n", "L-168049__VCAP__trt_cp -2.498789\n", "BX-795__HT29__trt_cp -2.146887\n", "cucurbitacin-i__MCF7__trt_cp -2.131572\n", "CT-200783__VCAP__trt_cp -2.346538\n", "BRD-K60870698__A375__trt_cp -2.611861\n", "BRD-K84203638__A375__trt_cp -2.241982\n", "BRD-K05153001__A549__trt_cp -2.140815\n", "BRD-K85275009__A549__trt_cp -4.711900\n", "BRD-K05402890__HA1E__trt_cp -2.309873\n", "BRD-A58924247__HT29__trt_cp -2.229404\n", "BRD-K91691979__PC3__trt_cp -2.309459\n", "BRD-K19735876__A375__trt_cp -2.083350\n", "BRD-A21406558__MCF7__trt_cp -2.156250\n", "BRD-K07259155__MCF7__trt_cp -2.299050\n", "BRD-K66884694__MCF7__trt_cp -2.475050\n", "BRD-K44366801__VCAP__trt_cp -2.178808\n", "BRD-K66884694__VCAP__trt_cp -2.011937\n", "BRD-K97936712__VCAP__trt_cp -3.313371\n", "BRD-K43267173__A549__trt_cp -2.390900\n", "BRD-K36354764__MCF7__trt_cp -3.101150\n", "BRD-K69516039__MCF7__trt_cp -2.021250\n", "BRD-K89224880__VCAP__trt_cp -2.112464\n", "BRD-K31600199__A549__trt_cp -2.020900\n", "BRD-K96213252__PC3__trt_cp -2.565480\n", "BRD-K01265221__VCAP__trt_cp -2.176564\n", "BRD-K49403449__VCAP__trt_cp -2.060382\n", "doxylamine__MCF7__trt_cp -2.074550\n", "BRD-K02223034__A549__trt_cp -2.238800\n", "BRD-K25731886__A549__trt_cp -4.073600\n", "alvocidib__A549__trt_cp -3.286200\n", "BRD-K04534322__NEU__trt_cp -2.297000\n", "doxercalciferol__NEU__trt_cp -2.532200\n", "BRD-K25731886__NEU__trt_cp -2.935900\n", "fludarabine__NEU__trt_cp -2.533750\n", "vorinostat__NEU__trt_cp -2.218620\n", "BRD-K98731749__NEU__trt_cp -3.041465\n", "HU-211__NPC__trt_cp -2.471365\n", "panobinostat__NPC__trt_cp -2.327604\n", "MD-II-038__NPC__trt_cp -2.662000\n", "vorinostat__NPC__trt_cp -3.182482\n", "BRD-K36767861__PHH__trt_cp -3.222438\n", "BRD-K76926998__PHH__trt_cp -2.428900\n", "BRD-K02223034__SKB__trt_cp -2.220776\n", "SA-1447005__VCAP__trt_cp -2.625348\n", "KM-01366__A549__trt_cp -2.407488\n", "cilomilast__A549__trt_cp -2.377500\n", "STOCK1S-03920__MCF7__trt_cp -2.238906\n", "BRD-A68274214__NEU__trt_cp -2.049750\n", "F-1061-0166__NEU__trt_cp -2.821000\n", "danusertib__NEU__trt_cp -2.525500\n", "daunorubicin__NEU__trt_cp -3.230900\n", "BRD-K03176945__NPC__trt_cp -3.337900\n", "daunorubicin__NPC__trt_cp -2.862800\n", "YM-155__NPC__trt_cp -2.259500\n", "BRD-K18163752__VCAP__trt_cp -2.160134\n", "parthenolide-(alternate-stereo)__VCAP__trt_cp -2.302193\n", "fenretinide__A549__trt_cp -2.163292\n", "EI-231__NEU__trt_cp -2.552800\n", "STK-397047__NEU__trt_cp -2.067650\n", "HO-013__NEU__trt_cp -2.231300\n", "SB-590885__NPC__trt_cp -2.488000\n", "A-443644__NPC__trt_cp -3.773600\n", "crizotinib__NPC__trt_cp -2.158628\n", "SB-239063__NPC__trt_cp -2.090600\n", "fenretinide__NPC__trt_cp -2.259500\n", "WZ-3105__NPC__trt_cp -2.444200\n", "torin-2__PHH__trt_cp -2.098830\n", "linifanib__PHH__trt_cp -2.263827\n", "BRD-K07061353__VCAP__trt_cp -2.104658\n", "mitotane__A549__trt_cp -2.035658\n", "nocodazole__NPC__trt_cp -2.571381\n", "penfluridol__NPC__trt_cp -4.722900\n", "podophyllotoxin__NPC__trt_cp -2.724479\n", "butoconazole__PHH__trt_cp -2.217050\n", "vinblastine__PHH__trt_cp -2.215100\n", "paroxetine__PHH__trt_cp -2.036100\n", "dicyclohexylurea__SKB__trt_cp -2.763450\n", "anisomycin__ASC__trt_cp -2.111786\n", "LFM-A13__NEU__trt_cp -4.818600\n", "bisindolylmaleimide-ix__NEU__trt_cp -2.053642\n", "BML-257__NEU__trt_cp -5.686600\n", "caffeic-acid__NEU__trt_cp -2.145504\n", "BRD-K93541117__NEU__trt_cp -2.055563\n", "teniposide__NPC__trt_cp -2.629349\n", "aminopurvalanol-a__NPC__trt_cp -2.470100\n", "dextromethorphan__NPC__trt_cp -2.140700\n", "LY-2183240__NPC__trt_cp -2.371386\n", "methyl-2,5-dihydroxycinnamate__NPC__trt_cp -2.420496\n", "mocimycin__A549__trt_cp -2.049930\n", "calycanthine__A549__trt_cp -2.105199\n", "L-701252__ASC__trt_cp -4.062200\n", "BMY-14802__NPC__trt_cp -2.252357\n", "KF-38789__NPC__trt_cp -2.480147\n", "ryuvidine__NPC__trt_cp -2.028050\n", "ER-27319__NPC__trt_cp -2.306100\n", "SYK-inhibitor__NPC__trt_cp -2.415230\n", "SB-431542__NPC__trt_cp -3.160610\n", "BMY-14802__PHH__trt_cp -2.118578\n", "ER-27319__PHH__trt_cp -2.346425\n", "milrinone__PHH__trt_cp -2.402087\n", "CS-110266__ASC__trt_cp -3.594700\n", "gitoxigenin__NPC__trt_cp -2.226500\n", "cymarin__NPC__trt_cp -2.899550\n", "amiodarone__PHH__trt_cp -3.548564\n", "tranilast__PHH__trt_cp -3.020363\n", "DMeOB__PHH__trt_cp -2.837748\n", "DCEBIO__PHH__trt_cp -4.610377\n", "hexamethyleneamiloride__PHH__trt_cp -2.153800\n", "EMF-bca1-16__VCAP__trt_cp -2.197326\n", "LY-2140023__VCAP__trt_cp -2.124259\n", "aminohippuric-acid__PC3__trt_cp -2.049750\n", "triphenyl-tin__HA1E__trt_cp -2.005953\n", "tributyltin__HA1E__trt_cp -3.094550\n", "BRD-K86671899__A375__trt_cp -2.286732\n", "BRD-K23985857__HT29__trt_cp -2.080577\n", "BRD-K62242359__HT29__trt_cp -2.488255\n", "BRD-K90734091__HT29__trt_cp -2.162145\n", "BRD-K00381581__NEU__trt_cp -2.035250\n", "BRD-K38294617__NEU__trt_cp -2.160950\n", "BRD-K48673964__NEU__trt_cp -2.307650\n", "BRD-K88822846__NEU__trt_cp -2.472500\n", "BRD-K86048057__NPC__trt_cp -2.548067\n", "BRD-K29423519__A549__trt_cp -2.396733\n", "BRD-K73276569__A549__trt_cp -2.140650\n", "BRD-K15524596__NEU__trt_cp -2.229450\n", "BRD-K79532217__NEU__trt_cp -2.014550\n", "BRD-K68504618__NPC__trt_cp -2.003538\n", "BRD-K80169513__NPC__trt_cp -2.226549\n", "BRD-K81408913__NPC__trt_cp -2.731183\n", "BRD-K85205404__NPC__trt_cp -2.147588\n", "BRD-K36620425__VCAP__trt_cp -2.140300\n", "BRD-K18545493__VCAP__trt_cp -2.066177\n", "BRD-K97255584__VCAP__trt_cp -2.006109\n", "peruvoside__VCAP__trt_cp -2.691100\n", "lanatoside-c__VCAP__trt_cp -2.178000\n", "BRD-K34314104__VCAP__trt_cp -3.205300\n", "BRD-K26510616__PC3__trt_cp -2.360850\n", "QL-X-138__MCF10A__trt_cp -2.111429\n", "PD-0325901__BT20__trt_cp -2.014726\n", "ON-01910__BT20__trt_cp -2.140587\n", "SA-1925610__MCF7__trt_cp -2.547700\n", "SA-3676__NKDBA__trt_cp -2.158700\n", "SA-1459213__MCF7__trt_cp -2.359300\n", "BRD-A12426960__FIBRNPC__trt_cp -2.284850\n", "ephedrine__FIBRNPC__trt_cp -2.402400\n", "6-nitrodopamine__FIBRNPC__trt_cp -2.209700\n", "BRD-K19653414__FIBRNPC__trt_cp -2.113800\n", "n-bromoacetyltryptamine__FIBRNPC__trt_cp -2.205550\n", "BRD-A42610307__NEU__trt_cp -2.110316\n", "BRD-A86146706__NEU__trt_cp -2.311600\n", "BG-1003__NEU__trt_cp -2.279669\n", "SR-12813__NEU__trt_cp -2.061450\n", "LBH-589__NEU__trt_cp -2.051542\n", "BG-1003__NPC__trt_cp -2.050464\n", "LBH-589__NPC__trt_cp -2.351810\n", "BG-1008__NEU__trt_cp -2.506527\n", "temozolomide__NEU__trt_cp -2.358148\n", "BG-1005__NEU__trt_cp -2.408175\n", "BG-1025__NEU__trt_cp -2.330200\n", "C2-dihydroceramide__NEU__trt_cp -2.060200\n", "BG-1030__NEU__trt_cp -2.047566\n", "oxamflatin__NPC__trt_cp -2.670142\n", "BG-1029__NPC__trt_cp -2.168213\n", "BG-1006__NPC__trt_cp -2.664152\n", "BML-284__NPC__trt_cp -4.036828\n", "M-344__NPC__trt_cp -2.041860\n", "BG-1025__NPC__trt_cp -2.107575\n", "BG-1026__NPC__trt_cp -2.440128\n", "NCH-51__NPC__trt_cp -2.122013\n", "BG-1007__NPC__trt_cp -2.229874\n", "BG-1028__NPC__trt_cp -2.391268\n", "BG-1027__NPC__trt_cp -2.334610\n", "tert-butylhydroquinone__MCF7__trt_cp -3.080953\n", "panobinostat__A375__trt_cp -2.063759\n", "staurosporine__A375__trt_cp -3.507200\n", "apicidin__A375__trt_cp -2.681550\n", "BRD-K57064803__MCF7__trt_cp -2.356925\n", "alpha-tocopherol__MCF7__trt_cp -2.502400\n", "JMW-MITF1__MCF7__trt_cp -2.199600\n", "alpha-tocopherol__PC3__trt_cp -2.310900\n", "bortezomib__PC3__trt_cp -3.855000\n", "\n", "$HOXC5\n", " drug\n", "aminomethyltransferase__HA1E__trt_cp aminomethyltransferase__HA1E__trt_cp\n", "ARP-101__HA1E__trt_cp ARP-101__HA1E__trt_cp\n", "homoharringtonine__HA1E__trt_cp homoharringtonine__HA1E__trt_cp\n", "CFM-1571__HCC515__trt_cp CFM-1571__HCC515__trt_cp\n", "apoptosis-activator-II__HCC515__trt_cp apoptosis-activator-II__HCC515__trt_cp\n", "puromycin__VCAP__trt_cp puromycin__VCAP__trt_cp\n", "NSC-632839__VCAP__trt_cp NSC-632839__VCAP__trt_cp\n", "NNC-711__VCAP__trt_cp NNC-711__VCAP__trt_cp\n", "MG-132__VCAP__trt_cp MG-132__VCAP__trt_cp\n", "Ro-15-4513__VCAP__trt_cp Ro-15-4513__VCAP__trt_cp\n", "R-59022__HA1E__trt_cp R-59022__HA1E__trt_cp\n", "cucurbitacin-i__MCF7__trt_cp cucurbitacin-i__MCF7__trt_cp\n", "SCH-79797__MCF7__trt_cp SCH-79797__MCF7__trt_cp\n", "BRD-K19290969__A549__trt_cp BRD-K19290969__A549__trt_cp\n", "BIX-02188__VCAP__trt_cp BIX-02188__VCAP__trt_cp\n", "BRD-A98444709__A549__trt_cp BRD-A98444709__A549__trt_cp\n", "BRD-K18726304__MCF7__trt_cp BRD-K18726304__MCF7__trt_cp\n", "toremifene__MCF7__trt_cp toremifene__MCF7__trt_cp\n", "BRD-K32896438__MCF7__trt_cp BRD-K32896438__MCF7__trt_cp\n", "RAN-27__NEU__trt_cp RAN-27__NEU__trt_cp\n", "BRD-K44893543__NEU__trt_cp BRD-K44893543__NEU__trt_cp\n", "cytochalasin-d__MCF7__trt_cp cytochalasin-d__MCF7__trt_cp\n", "ST-4029010__NEU__trt_cp ST-4029010__NEU__trt_cp\n", "sorafenib__VCAP__trt_cp sorafenib__VCAP__trt_cp\n", "BG-FA-0953__VCAP__trt_cp BG-FA-0953__VCAP__trt_cp\n", "WYE-354__ASC__trt_cp WYE-354__ASC__trt_cp\n", "WYE-125132__MCF7__trt_cp WYE-125132__MCF7__trt_cp\n", "verrucarin-a__NEU__trt_cp verrucarin-a__NEU__trt_cp\n", "mirin__VCAP__trt_cp mirin__VCAP__trt_cp\n", "CGP-71683__MCF7__trt_cp CGP-71683__MCF7__trt_cp\n", "NSC-663284__PHH__trt_cp NSC-663284__PHH__trt_cp\n", "proadifen__ASC__trt_cp proadifen__ASC__trt_cp\n", "anisomycin__NEU__trt_cp anisomycin__NEU__trt_cp\n", "formoterol__SKB__trt_cp formoterol__SKB__trt_cp\n", "FCCP__MCF7__trt_cp FCCP__MCF7__trt_cp\n", "diphenyleneiodonium__MCF7__trt_cp diphenyleneiodonium__MCF7__trt_cp\n", "NSC-94258__MCF7__trt_cp NSC-94258__MCF7__trt_cp\n", "SQ-22536__NPC__trt_cp SQ-22536__NPC__trt_cp\n", "pyrvinium__MCF7__trt_cp pyrvinium__MCF7__trt_cp\n", "BRD-K00835201__NEU__trt_cp BRD-K00835201__NEU__trt_cp\n", "BRD-K75264577__NEU__trt_cp BRD-K75264577__NEU__trt_cp\n", "BRD-K01477275__NPC__trt_cp BRD-K01477275__NPC__trt_cp\n", "BRD-K02519835__VCAP__trt_cp BRD-K02519835__VCAP__trt_cp\n", "motesanib__HS578T__trt_cp motesanib__HS578T__trt_cp\n", "SYK-inhibitor__SKBR3__trt_cp SYK-inhibitor__SKBR3__trt_cp\n", "ENMD-2076__A375__trt_cp ENMD-2076__A375__trt_cp\n", "BRD-K99636700__HCC515__trt_cp BRD-K99636700__HCC515__trt_cp\n", "apicidin__HEPG2__trt_cp apicidin__HEPG2__trt_cp\n", "avrainvillamide-analog-4__MCF7__trt_cp avrainvillamide-analog-4__MCF7__trt_cp\n", " zscore\n", "aminomethyltransferase__HA1E__trt_cp -2.349426\n", "ARP-101__HA1E__trt_cp -2.420850\n", "homoharringtonine__HA1E__trt_cp -2.545411\n", "CFM-1571__HCC515__trt_cp -2.027797\n", "apoptosis-activator-II__HCC515__trt_cp -2.027338\n", "puromycin__VCAP__trt_cp -3.208967\n", "NSC-632839__VCAP__trt_cp -2.437900\n", "NNC-711__VCAP__trt_cp -2.587158\n", "MG-132__VCAP__trt_cp -2.497801\n", "Ro-15-4513__VCAP__trt_cp -2.462467\n", "R-59022__HA1E__trt_cp -2.440392\n", "cucurbitacin-i__MCF7__trt_cp -2.504937\n", "SCH-79797__MCF7__trt_cp -3.103155\n", "BRD-K19290969__A549__trt_cp -2.442208\n", "BIX-02188__VCAP__trt_cp -2.021193\n", "BRD-A98444709__A549__trt_cp -2.181950\n", "BRD-K18726304__MCF7__trt_cp -2.498750\n", "toremifene__MCF7__trt_cp -2.111762\n", "BRD-K32896438__MCF7__trt_cp -2.568452\n", "RAN-27__NEU__trt_cp -2.057970\n", "BRD-K44893543__NEU__trt_cp -2.403568\n", "cytochalasin-d__MCF7__trt_cp -2.524929\n", "ST-4029010__NEU__trt_cp -2.160550\n", "sorafenib__VCAP__trt_cp -2.387828\n", "BG-FA-0953__VCAP__trt_cp -2.010978\n", "WYE-354__ASC__trt_cp -2.030976\n", "WYE-125132__MCF7__trt_cp -2.019033\n", "verrucarin-a__NEU__trt_cp -2.535550\n", "mirin__VCAP__trt_cp -2.051119\n", "CGP-71683__MCF7__trt_cp -2.191356\n", "NSC-663284__PHH__trt_cp -2.232050\n", "proadifen__ASC__trt_cp -2.171099\n", "anisomycin__NEU__trt_cp -2.530992\n", "formoterol__SKB__trt_cp -2.052984\n", "FCCP__MCF7__trt_cp -2.068842\n", "diphenyleneiodonium__MCF7__trt_cp -2.738179\n", "NSC-94258__MCF7__trt_cp -2.348442\n", "SQ-22536__NPC__trt_cp -2.024650\n", "pyrvinium__MCF7__trt_cp -2.287450\n", "BRD-K00835201__NEU__trt_cp -2.013800\n", "BRD-K75264577__NEU__trt_cp -2.051050\n", "BRD-K01477275__NPC__trt_cp -2.038408\n", "BRD-K02519835__VCAP__trt_cp -2.148807\n", "motesanib__HS578T__trt_cp -2.047123\n", "SYK-inhibitor__SKBR3__trt_cp -2.655849\n", "ENMD-2076__A375__trt_cp -2.061680\n", "BRD-K99636700__HCC515__trt_cp -2.166222\n", "apicidin__HEPG2__trt_cp -2.335700\n", "avrainvillamide-analog-4__MCF7__trt_cp -2.152519\n" ] }, "metadata": {}, "output_type": "display_data" } ], "source": [ "####screen the drug with decreased the TF's expression\n", "drug.lists <- list()\n", "for(i in 1:nrow(lincs.TF.matrix)){\n", " zscore <- lincs.TF.matrix[i,]\n", " info <- data.frame(drug = colnames(lincs.TF.matrix), zscore = zscore)\n", " sig.drug <- which(info$zscore < -2) \n", " if(length(sig.drug)>0){\n", " sig.info <- info[sig.drug,]\n", " }else{\n", " sig.info <- NULL\n", " }\n", " drug.lists <- c(drug.lists, list(sig.info))\n", "}\n", "names(drug.lists) <- rownames(lincs.TF.matrix)\n", "drug.lists" ] }, { "cell_type": "code", "execution_count": 7, "id": "61e3f9ea-c347-4e6e-bb49-0119d7e72528", "metadata": { "collapsed": true, "execution": { "iopub.execute_input": "2021-09-22T03:01:15.962166Z", "iopub.status.busy": "2021-09-22T03:01:15.961282Z", "iopub.status.idle": "2021-09-22T03:01:15.991988Z", "shell.execute_reply": "2021-09-22T03:01:15.990966Z" }, "jupyter": { "outputs_hidden": true, "source_hidden": true }, "tags": [], "vscode": { "languageId": "r" } }, "outputs": [ { "data": { "text/plain": [ "drugs\n", " BRD-A30083233__VCAP__trt_cp \n", " 6 \n", "parthenolide-(alternate-stereo)__VCAP__trt_cp \n", " 6 \n", " BML-257__NEU__trt_cp \n", " 5 \n", " tubacin__VCAP__trt_cp \n", " 5 \n", " 1-phenylbiguanide__PHH__trt_cp \n", " 4 \n", " BRD-A68274214__VCAP__trt_cp \n", " 4 \n", " BRD-K25731886__A549__trt_cp \n", " 4 \n", " genistein__VCAP__trt_cp \n", " 4 \n", " homoharringtonine__HA1E__trt_cp \n", " 4 \n", " kitasamycin__VCAP__trt_cp \n", " 4 \n", " LFM-A13__NEU__trt_cp \n", " 4 \n", " NSC-663284__PHH__trt_cp \n", " 4 \n", " anisomycin__NEU__trt_cp \n", " 3 \n", " BRD-K02519835__VCAP__trt_cp \n", " 3 \n", " BRD-K16180117__VCAP__trt_cp \n", " 3 \n", " BRD-K39345836__PC3__trt_cp \n", " 3 \n", " BRD-K44893543__NEU__trt_cp \n", " 3 \n", " BRD-K52914903__VCAP__trt_cp \n", " 3 \n", " BRD-K88278225__PC3__trt_cp \n", " 3 \n", " CGP-71683__MCF7__trt_cp \n", " 3 \n", " cucurbitacin-i__PHH__trt_cp \n", " 3 \n", " emetine__HA1E__trt_cp \n", " 3 \n", " IC-261__PHH__trt_cp \n", " 3 \n", " lansoprazole__VCAP__trt_cp \n", " 3 \n", " NAN-190__PHH__trt_cp \n", " 3 \n", " PD-173074__PHH__trt_cp \n", " 3 \n", " probenecid__A549__trt_cp \n", " 3 \n", " SEW-05685__VCAP__trt_cp \n", " 3 \n", " SJ-172550__VCAP__trt_cp \n", " 3 \n", " treprostinil__PHH__trt_cp \n", " 3 \n", " trichostatin-a__HA1E__trt_cp \n", " 3 \n", " verrucarin-a__NEU__trt_cp \n", " 3 \n", " verteporfin__VCAP__trt_cp \n", " 3 \n", " vinblastine__PHH__trt_cp \n", " 3 \n", " acitretin__NEU__trt_cp \n", " 2 \n", " apicidin__A375__trt_cp \n", " 2 \n", " apicidin__HEPG2__trt_cp \n", " 2 \n", " AS-605240__VCAP__trt_cp \n", " 2 \n", " avrainvillamide-analog-4__MCF7__trt_cp \n", " 2 \n", " BCL2-inhibitor__VCAP__trt_cp \n", " 2 \n", " BG-1003__NEU__trt_cp \n", " 2 \n", " BG-1006__NPC__trt_cp \n", " 2 \n", " BMY-14802__PHH__trt_cp \n", " 2 \n", " bortezomib__PC3__trt_cp \n", " 2 \n", " BRD-A16581344__A549__trt_cp \n", " 2 \n", " BRD-A38425832__VCAP__trt_cp \n", " 2 \n", " BRD-K03176945__NPC__trt_cp \n", " 2 \n", " BRD-K04534322__NEU__trt_cp \n", " 2 \n", " BRD-K05153001__A549__trt_cp \n", " 2 \n", " BRD-K05402890__HT29__trt_cp \n", " 2 \n", " BRD-K16827616__HT29__trt_cp \n", " 2 \n", " BRD-K25731886__NEU__trt_cp \n", " 2 \n", " BRD-K26684619__CD34__trt_cp \n", " 2 \n", " BRD-K34314104__VCAP__trt_cp \n", " 2 \n", " BRD-K44494044__NEU__trt_cp \n", " 2 \n", " BRD-K47764688__VCAP__trt_cp \n", " 2 \n", " BRD-K58247702__VCAP__trt_cp \n", " 2 \n", " BRD-K58279162__NEU__trt_cp \n", " 2 \n", " BRD-K59556282__NEU__trt_cp \n", " 2 \n", " BRD-K67236950__HT29__trt_cp \n", " 2 \n", " BRD-K72307842__HA1E__trt_cp \n", " 2 \n", " BRD-K75907833__PC3__trt_cp \n", " 2 \n", " BRD-K96213252__PC3__trt_cp \n", " 2 \n", " BRD-K98731749__NEU__trt_cp \n", " 2 \n", " brefeldin-a__HA1E__trt_cp \n", " 2 \n", " caffeine__HCC515__trt_cp \n", " 2 \n", " cephaeline__ASC__trt_cp \n", " 2 \n", " cilomilast__A549__trt_cp \n", " 2 \n", " cucurbitacin-i__MCF7__trt_cp \n", " 2 \n", " cyclopiazonic-acid__NEU__trt_cp \n", " 2 \n", " DMeOB__PHH__trt_cp \n", " 2 \n", " EMF-BCA1-57__ASC__trt_cp \n", " 2 \n", " GW-405833__HA1E__trt_cp \n", " 2 \n", " GW-7647__PHH__trt_cp \n", " 2 \n", " GW-7647__SKB__trt_cp \n", " 2 \n", " helveticoside__HA1E__trt_cp \n", " 2 \n", " HG-5-113-01__BT20__trt_cp \n", " 2 \n", " HO-013__NEU__trt_cp \n", " 2 \n", " ipsapirone__HT29__trt_cp \n", " 2 \n", " JMW-MITF1__MCF7__trt_cp \n", " 2 \n", " kinetin-riboside__HA1E__trt_cp \n", " 2 \n", " KU-C103853__MCF7__trt_cp \n", " 2 \n", " L-701252__PHH__trt_cp \n", " 2 \n", " M-344__NEU__trt_cp \n", " 2 \n", " mitotane__A549__trt_cp \n", " 2 \n", " MW-STK33-2B__A549__trt_cp \n", " 2 \n", " panobinostat__A375__trt_cp \n", " 2 \n", " panobinostat__HEPG2__trt_cp \n", " 2 \n", " panobinostat__NPC__trt_cp \n", " 2 \n", " PCI-24781__VCAP__trt_cp \n", " 2 \n", " PNU-96415E__HA1E__trt_cp \n", " 2 \n", " RAN-27__NEU__trt_cp \n", " 2 \n", " SA-1459213__MCF7__trt_cp \n", " 2 \n", " SB-239063__NEU__trt_cp \n", " 2 \n", " SB-239063__PHH__trt_cp \n", " 2 \n", " scriptaid__ASC__trt_cp \n", " 2 \n", " scriptaid__HA1E__trt_cp \n", " 2 \n", " SQ-22536__NPC__trt_cp \n", " 2 \n", " STOCK1S-03920__MCF7__trt_cp \n", " 2 \n", " terguride__A549__trt_cp \n", " 2 \n", " TG-100115__VCAP__trt_cp \n", " 2 \n", " thiocolchicoside__NPC__trt_cp \n", " 2 \n", " thiocolchicoside__SKB__trt_cp \n", " 2 \n", " vorinostat__HA1E__trt_cp \n", " 2 \n", " YM-155__NPC__trt_cp \n", " 2 \n", " zoxazolamine__PHH__trt_cp \n", " 2 \n", " 1-phenylbiguanide__NPC__trt_cp \n", " 1 \n", " 10-hydroxycamptothecin__PHH__trt_cp \n", " 1 \n", " 15-delta-prostaglandin-j2__HA1E__trt_cp \n", " 1 \n", " 6-nitrodopamine__FIBRNPC__trt_cp \n", " 1 \n", " A-23187__HEPG2__trt_cp \n", " 1 \n", " A-23187__HUH7__trt_cp \n", " 1 \n", " A-443644__NPC__trt_cp \n", " 1 \n", " ABT-751__HT29__trt_cp \n", " 1 \n", " acitretin__VCAP__trt_cp \n", " 1 \n", " AG-592__HA1E__trt_cp \n", " 1 \n", " AKT-inhibitor-IV__HT29__trt_cp \n", " 1 \n", " alendronic-acid__NEU__trt_cp \n", " 1 \n", " alpha-linolenic-acid__A549__trt_cp \n", " 1 \n", " alpha-tocopherol__MCF7__trt_cp \n", " 1 \n", " alpha-tocopherol__PC3__trt_cp \n", " 1 \n", " alvespimycin__PHH__trt_cp \n", " 1 \n", " alvocidib__A549__trt_cp \n", " 1 \n", " amcinonide__PHH__trt_cp \n", " 1 \n", " amcinonide__VCAP__trt_cp \n", " 1 \n", " aminohippuric-acid__PC3__trt_cp \n", " 1 \n", " aminomethyltransferase__HA1E__trt_cp \n", " 1 \n", " aminopentamide__A549__trt_cp \n", " 1 \n", " aminopurvalanol-a__NPC__trt_cp \n", " 1 \n", " amiodarone__PHH__trt_cp \n", " 1 \n", " amisulpride__HA1E__trt_cp \n", " 1 \n", " amodiaquine__NEU__trt_cp \n", " 1 \n", " amthamine__PHH__trt_cp \n", " 1 \n", " anagrelide__HA1E__trt_cp \n", " 1 \n", " androstenol__NEU__trt_cp \n", " 1 \n", " anisomycin__ASC__trt_cp \n", " 1 \n", " anisomycin__HA1E__trt_cp \n", " 1 \n", " anisomycin__SKB__trt_cp \n", " 1 \n", " anthothecol__PHH__trt_cp \n", " 1 \n", " apicidin__FIBRNPC__trt_cp \n", " 1 \n", " apicidin__HA1E__trt_cp \n", " 1 \n", " apicidin__HT29__trt_cp \n", " 1 \n", " apicidin__NEU__trt_cp \n", " 1 \n", " apigenin__NEU__trt_cp \n", " 1 \n", " apoptosis-activator-II__HCC515__trt_cp \n", " 1 \n", " ARP-101__HA1E__trt_cp \n", " 1 \n", " AS-604850__ASC__trt_cp \n", " 1 \n", " AVA__HA1E__trt_cp \n", " 1 \n", " avrainvillamide-analog-3__A375__trt_cp \n", " 1 \n", " benazepril__HA1E__trt_cp \n", " 1 \n", " beta-alanine__NEU__trt_cp \n", " 1 \n", " betamethasone__PHH__trt_cp \n", " 1 \n", " BG-1003__NPC__trt_cp \n", " 1 \n", " BG-1005__NEU__trt_cp \n", " 1 \n", " BG-1007__NPC__trt_cp \n", " 1 \n", " BG-1008__NEU__trt_cp \n", " 1 \n", " BG-1025__NEU__trt_cp \n", " 1 \n", " BG-1025__NPC__trt_cp \n", " 1 \n", " BG-1026__NPC__trt_cp \n", " 1 \n", " BG-1027__NPC__trt_cp \n", " 1 \n", " BG-1028__NPC__trt_cp \n", " 1 \n", " BG-1029__NPC__trt_cp \n", " 1 \n", " BG-1030__NEU__trt_cp \n", " 1 \n", " BG-FA-0953__VCAP__trt_cp \n", " 1 \n", " BH3I-1__PHH__trt_cp \n", " 1 \n", " BI-2536__A375__trt_cp \n", " 1 \n", " BI-2536__A549__trt_cp \n", " 1 \n", " BI-2536__BT20__trt_cp \n", " 1 \n", " BI-2536__PC3__trt_cp \n", " 1 \n", " bisindolylmaleimide-ix__NEU__trt_cp \n", " 1 \n", " bithionol__HA1E__trt_cp \n", " 1 \n", " bithionol__HCC515__trt_cp \n", " 1 \n", " BIX-02188__VCAP__trt_cp \n", " 1 \n", " BML-257__NPC__trt_cp \n", " 1 \n", " BML-284__NPC__trt_cp \n", " 1 \n", " BMY-14802__NPC__trt_cp \n", " 1 \n", " BNTX__HT29__trt_cp \n", " 1 \n", " brazilin__HA1E__trt_cp \n", " 1 \n", " BRD-A00474148__PC3__trt_cp \n", " 1 \n", " BRD-A11095214__MCF7__trt_cp \n", " 1 \n", " BRD-A12426960__FIBRNPC__trt_cp \n", " 1 \n", " BRD-A16581344__VCAP__trt_cp \n", " 1 \n", " BRD-A21406558__MCF7__trt_cp \n", " 1 \n", " BRD-A35072120__FIBRNPC__trt_cp \n", " 1 \n", " BRD-A36411721__PHH__trt_cp \n", " 1 \n", " BRD-A38425832__MCF7__trt_cp \n", " 1 \n", " BRD-A40163033__FIBRNPC__trt_cp \n", " 1 \n", " BRD-A42610307__NEU__trt_cp \n", " 1 \n", " BRD-A43126523__HA1E__trt_cp \n", " 1 \n", " BRD-A51929314__HA1E__trt_cp \n", " 1 \n", " BRD-A58924247__HT29__trt_cp \n", " 1 \n", " BRD-A60386802__NEU__trt_cp \n", " 1 \n", " BRD-A60386802__NPC__trt_cp \n", " 1 \n", " BRD-A68274214__NEU__trt_cp \n", " 1 \n", " BRD-A72069525__HA1E__trt_cp \n", " 1 \n", " BRD-A73929928__A549__trt_cp \n", " 1 \n", " BRD-A77577770__A549__trt_cp \n", " 1 \n", " BRD-A79058669__NEU__trt_cp \n", " 1 \n", " BRD-A81936046__VCAP__trt_cp \n", " 1 \n", " BRD-A84445767__MCF7__trt_cp \n", " 1 \n", " BRD-A86146706__NEU__trt_cp \n", " 1 \n", " BRD-A93015352__NEU__trt_cp \n", " 1 \n", " BRD-A93015352__VCAP__trt_cp \n", " 1 \n", " BRD-A94675310__HT29__trt_cp \n", " 1 \n", " BRD-A95820578__NEU__trt_cp \n", " 1 \n", " BRD-A95820578__VCAP__trt_cp \n", " 1 \n", " BRD-A95937159__NPC__trt_cp \n", " 1 \n", " BRD-A98444709__A549__trt_cp \n", " 1 \n", " BRD-K00381581__A549__trt_cp \n", " 1 \n", " BRD-K00381581__NEU__trt_cp \n", " 1 \n", " BRD-K00835201__NEU__trt_cp \n", " 1 \n", " BRD-K00954209__A549__trt_cp \n", " 1 \n", " BRD-K01265221__VCAP__trt_cp \n", " 1 \n", " BRD-K01477275__NPC__trt_cp \n", " 1 \n", " BRD-K02025760__PC3__trt_cp \n", " 1 \n", " BRD-K02117849__NEU__trt_cp \n", " 1 \n", " BRD-K02223034__A549__trt_cp \n", " 1 \n", " BRD-K02223034__SKB__trt_cp \n", " 1 \n", " BRD-K03358980__VCAP__trt_cp \n", " 1 \n", " BRD-K03601405__VCAP__trt_cp \n", " 1 \n", " BRD-K04534322__PHH__trt_cp \n", " 1 \n", " BRD-K04534322__SKB__trt_cp \n", " 1 \n", " BRD-K04676863__MCF7__trt_cp \n", " 1 \n", " BRD-K05002121__A375__trt_cp \n", " 1 \n", " BRD-K05353139__HT29__trt_cp \n", " 1 \n", " BRD-K05402890__HA1E__trt_cp \n", " 1 \n", " BRD-K06592610__VCAP__trt_cp \n", " 1 \n", " BRD-K07061353__VCAP__trt_cp \n", " 1 \n", " BRD-K07161233__NEU__trt_cp \n", " 1 \n", " BRD-K07259155__MCF7__trt_cp \n", " 1 \n", " BRD-K07877311__PC3__trt_cp \n", " 1 \n", " BRD-K08438429__A549__trt_cp \n", " 1 \n", " BRD-K09460252__SKB__trt_cp \n", " 1 \n", " BRD-K10361096__A375__trt_cp \n", " 1 \n", " BRD-K10846167__PC3__trt_cp \n", " 1 \n", " BRD-K13146765__HA1E__trt_cp \n", " 1 \n", " BRD-K13872703__ASC__trt_cp \n", " 1 \n", " BRD-K14316227__NPC__trt_cp \n", " 1 \n", " BRD-K14704318__MCF7__trt_cp \n", " 1 \n", " BRD-K14842454__NEU__trt_cp \n", " 1 \n", " BRD-K15524596__NEU__trt_cp \n", " 1 \n", " BRD-K16346331__PHH__trt_cp \n", " 1 \n", " BRD-K16410418__HT29__trt_cp \n", " 1 \n", " BRD-K17203693__HA1E__trt_cp \n", " 1 \n", " BRD-K18163752__VCAP__trt_cp \n", " 1 \n", " BRD-K18545493__VCAP__trt_cp \n", " 1 \n", " BRD-K18722736__NEU__trt_cp \n", " 1 \n", " BRD-K18726304__MCF7__trt_cp \n", " 1 \n", " BRD-K19290969__A549__trt_cp \n", " 1 \n", " BRD-K19433082__HT29__trt_cp \n", " 1 \n", " BRD-K19653414__FIBRNPC__trt_cp \n", " 1 \n", " BRD-K19696793__MCF7__trt_cp \n", " 1 \n", " BRD-K19735876__A375__trt_cp \n", " 1 \n", " BRD-K20401833__MCF7__trt_cp \n", " 1 \n", " BRD-K21064560__VCAP__trt_cp \n", " 1 \n", " BRD-K21672423__SKB__trt_cp \n", " 1 \n", " BRD-K22006123__HA1E__trt_cp \n", " 1 \n", " BRD-K22261046__NEU__trt_cp \n", " 1 \n", " BRD-K23027438__A549__trt_cp \n", " 1 \n", " BRD-K23165181__VCAP__trt_cp \n", " 1 \n", " BRD-K23985857__HT29__trt_cp \n", " 1 \n", " BRD-K24053449__A549__trt_cp \n", " 1 \n", " BRD-K24053449__MCF7__trt_cp \n", " 1 \n", " BRD-K24156250__VCAP__trt_cp \n", " 1 \n", " BRD-K24205443__VCAP__trt_cp \n", " 1 \n", " BRD-K24754728__A549__trt_cp \n", " 1 \n", " BRD-K25731886__ASC__trt_cp \n", " 1 \n", " BRD-K25731886__PHH__trt_cp \n", " 1 \n", " BRD-K26510616__PC3__trt_cp \n", " 1 \n", " BRD-K26767475__HT29__trt_cp \n", " 1 \n", " BRD-K28452084__VCAP__trt_cp \n", " 1 \n", " BRD-K28772322__VCAP__trt_cp \n", " 1 \n", " BRD-K28841686__NEU__trt_cp \n", " 1 \n", " BRD-K29423519__A549__trt_cp \n", " 1 \n", " BRD-K30126976__A375__trt_cp \n", " 1 \n", " BRD-K30704475__NEU__trt_cp \n", " 1 \n", " BRD-K31290914__A375__trt_cp \n", " 1 \n", " BRD-K31600199__A549__trt_cp \n", " 1 \n", " BRD-K32598858__PHH__trt_cp \n", " 1 \n", " BRD-K32827536__PC3__trt_cp \n", " 1 \n", " BRD-K32896438__MCF7__trt_cp \n", " 1 \n", " BRD-K33182644__MCF7__trt_cp \n", " 1 \n", " BRD-K33676730__PHH__trt_cp \n", " 1 \n", " BRD-K33743361__VCAP__trt_cp \n", " 1 \n", " BRD-K34547533__PC3__trt_cp \n", " 1 \n", " BRD-K35254025__A549__trt_cp \n", " 1 \n", " BRD-K35568648__PHH__trt_cp \n", " 1 \n", " BRD-K35568648__SKB__trt_cp \n", " 1 \n", " BRD-K35716340__HT29__trt_cp \n", " 1 \n", " BRD-K36354764__MCF7__trt_cp \n", " 1 \n", " BRD-K36620425__VCAP__trt_cp \n", " 1 \n", " BRD-K36767861__PHH__trt_cp \n", " 1 \n", " BRD-K36864553__HT29__trt_cp \n", " 1 \n", " BRD-K37340241__A549__trt_cp \n", " 1 \n", " BRD-K37340241__NPC__trt_cp \n", " 1 \n", " BRD-K37724988__PC3__trt_cp \n", " 1 \n", " BRD-K37762845__NEU__trt_cp \n", " 1 \n", " BRD-K38294617__NEU__trt_cp \n", " 1 \n", " BRD-K39345836__HT29__trt_cp \n", " 1 \n", " BRD-K39799535__A549__trt_cp \n", " 1 \n", " BRD-K40185230__A549__trt_cp \n", " 1 \n", " BRD-K40758391__HA1E__trt_cp \n", " 1 \n", " BRD-K41925105__PC3__trt_cp \n", " 1 \n", " BRD-K43253317__NEU__trt_cp \n", " 1 \n", " BRD-K43267173__A549__trt_cp \n", " 1 \n", " BRD-K44261129__HT29__trt_cp \n", " 1 \n", " BRD-K44366801__VCAP__trt_cp \n", " 1 \n", " BRD-K44575778__A549__trt_cp \n", " 1 \n", " BRD-K45114207__A549__trt_cp \n", " 1 \n", " BRD-K45114207__NEU__trt_cp \n", " 1 \n", " BRD-K45205755__A549__trt_cp \n", " 1 \n", " BRD-K45230579__A549__trt_cp \n", " 1 \n", " BRD-K45627302__MCF7__trt_cp \n", " 1 \n", " BRD-K45842176__NEU__trt_cp \n", " 1 \n", " BRD-K46814258__VCAP__trt_cp \n", " 1 \n", " BRD-K47512679__NPC__trt_cp \n", " 1 \n", " BRD-K48199208__HA1E__trt_cp \n", " 1 \n", " BRD-K48598367__NEU__trt_cp \n", " 1 \n", " BRD-K48673964__NEU__trt_cp \n", " 1 \n", " BRD-K48844671__PC3__trt_cp \n", " 1 \n", " BRD-K49403449__VCAP__trt_cp \n", " 1 \n", " BRD-K49562544__HA1E__trt_cp \n", " 1 \n", " BRD-K49861754__NEU__trt_cp \n", " 1 \n", " BRD-K50748030__MCF7__trt_cp \n", " 1 \n", " BRD-K51696048__ASC__trt_cp \n", " 1 \n", " BRD-K53335770__MCF7__trt_cp \n", " 1 \n", " BRD-K53833301__HA1E__trt_cp \n", " 1 \n", " BRD-K54159704__NEU__trt_cp \n", " 1 \n", " BRD-K54558492__VCAP__trt_cp \n", " 1 \n", " BRD-K57064803__MCF7__trt_cp \n", " 1 \n", " BRD-K57353465__A375__trt_cp \n", " 1 \n", " BRD-K59472190__MCF7__trt_cp \n", " 1 \n", " BRD-K60379529__A549__trt_cp \n", " 1 \n", " BRD-K60870698__A375__trt_cp \n", " 1 \n", " BRD-K60870698__A549__trt_cp \n", " 1 \n", " BRD-K60870698__HA1E__trt_cp \n", " 1 \n", " BRD-K61359235__PC3__trt_cp \n", " 1 \n", " BRD-K62056344__HUH7__trt_cp \n", " 1 \n", " BRD-K62242359__HT29__trt_cp \n", " 1 \n", " BRD-K62578746__MCF7__trt_cp \n", " 1 \n", " BRD-K63000292__MCF7__trt_cp \n", " 1 \n", " BRD-K63770300__HA1E__trt_cp \n", " 1 \n", " BRD-K64985742__A549__trt_cp \n", " 1 \n", " BRD-K66426634__A549__trt_cp \n", " 1 \n", " BRD-K66658536__NEU__trt_cp \n", " 1 \n", " BRD-K66884694__MCF7__trt_cp \n", " 1 \n", " BRD-K66884694__VCAP__trt_cp \n", " 1 \n", " BRD-K67010098__NEU__trt_cp \n", " 1 \n", " BRD-K67118123__PC3__trt_cp \n", " 1 \n", " BRD-K67470788__NEU__trt_cp \n", " 1 \n", " BRD-K67514995__NEU__trt_cp \n", " 1 \n", " BRD-K67774729__HA1E__trt_cp \n", " 1 \n", " BRD-K67925802__VCAP__trt_cp \n", " 1 \n", " BRD-K68504618__NPC__trt_cp \n", " 1 \n", " BRD-K69406317__NEU__trt_cp \n", " 1 \n", " BRD-K69516039__MCF7__trt_cp \n", " 1 \n", " BRD-K69795440__A549__trt_cp \n", " 1 \n", " BRD-K70891562__A549__trt_cp \n", " 1 \n", " BRD-K70917163__VCAP__trt_cp \n", " 1 \n", " BRD-K71265179__HT29__trt_cp \n", " 1 \n", " BRD-K71292008__ASC__trt_cp \n", " 1 \n", " BRD-K73125384__A549__trt_cp \n", " 1 \n", " BRD-K73143528__HT29__trt_cp \n", " 1 \n", " BRD-K73276569__A549__trt_cp \n", " 1 \n", " BRD-K74109131__A549__trt_cp \n", " 1 \n", " BRD-K74109131__NEU__trt_cp \n", " 1 \n", " BRD-K74534237__PHH__trt_cp \n", " 1 \n", " BRD-K75264577__NEU__trt_cp \n", " 1 \n", " BRD-K75329208__NEU__trt_cp \n", " 1 \n", " BRD-K75641083__A549__trt_cp \n", " 1 \n", " BRD-K76079827__PC3__trt_cp \n", " 1 \n", " BRD-K76236182__NEU__trt_cp \n", " 1 \n", " BRD-K76264608__HT29__trt_cp \n", " 1 \n", " BRD-K76691125__VCAP__trt_cp \n", " 1 \n", " BRD-K76926998__PHH__trt_cp \n", " 1 \n", " BRD-K77547920__VCAP__trt_cp \n", " 1 \n", " BRD-K78062244__NEU__trt_cp \n", " 1 \n", " BRD-K78133682__A375__trt_cp \n", " 1 \n", " BRD-K78133682__HT29__trt_cp \n", " 1 \n", " BRD-K79532217__NEU__trt_cp \n", " 1 \n", " BRD-K79657514__NPC__trt_cp \n", " 1 \n", " BRD-K80169513__NPC__trt_cp \n", " 1 \n", " BRD-K80962769__MCF7__trt_cp \n", " 1 \n", " BRD-K81408913__NPC__trt_cp \n", " 1 \n", " BRD-K82732294__A549__trt_cp \n", " 1 \n", " BRD-K82732294__MCF7__trt_cp \n", " 1 \n", " BRD-K82732294__VCAP__trt_cp \n", " 1 \n", " BRD-K82971429__PHH__trt_cp \n", " 1 \n", " BRD-K83589469__HA1E__trt_cp \n", " 1 \n", " BRD-K83694683__HEPG2__trt_cp \n", " 1 \n", " BRD-K83694683__MCF7__trt_cp \n", " 1 \n", " BRD-K84203638__A375__trt_cp \n", " 1 \n", " BRD-K85174275__MCF7__trt_cp \n", " 1 \n", " BRD-K85205404__NPC__trt_cp \n", " 1 \n", " BRD-K85266146__NEU__trt_cp \n", " 1 \n", " BRD-K85275009__A549__trt_cp \n", " 1 \n", " BRD-K85694079__NEU__trt_cp \n", " 1 \n", " BRD-K86048057__NPC__trt_cp \n", " 1 \n", " BRD-K86671899__A375__trt_cp \n", " 1 \n", " BRD-K88373420__NEU__trt_cp \n", " 1 \n", " BRD-K88542532__VCAP__trt_cp \n", " 1 \n", " BRD-K88556033__A549__trt_cp \n", " 1 \n", " BRD-K88822846__NEU__trt_cp \n", " 1 \n", " BRD-K88899793__NEU__trt_cp \n", " 1 \n", " BRD-K89107430__VCAP__trt_cp \n", " 1 \n", " BRD-K89224880__VCAP__trt_cp \n", " 1 \n", " BRD-K89326053__VCAP__trt_cp \n", " 1 \n", " BRD-K90734091__HT29__trt_cp \n", " 1 \n", " BRD-K91691979__PC3__trt_cp \n", " 1 \n", " BRD-K91781484__A549__trt_cp \n", " 1 \n", " BRD-K91781484__NEU__trt_cp \n", " 1 \n", " BRD-K92033419__A549__trt_cp \n", " 1 \n", " BRD-K92202821__PC3__trt_cp \n", " 1 \n", " BRD-K92302554__MCF7__trt_cp \n", " 1 \n", " BRD-K93541117__NEU__trt_cp \n", " 1 \n", " BRD-K93610587__HT29__trt_cp \n", " 1 \n", " BRD-K93760529__A549__trt_cp \n", " 1 \n", " BRD-K95037415__VCAP__trt_cp \n", " 1 \n", " BRD-K95352812__HA1E__trt_cp \n", " 1 \n", " BRD-K95482240__A549__trt_cp \n", " 1 \n", " BRD-K95789946__HA1E__trt_cp \n", " 1 \n", " BRD-K95895342__ASC__trt_cp \n", " 1 \n", " BRD-K96041907__HT29__trt_cp \n", " 1 \n", " BRD-K96194181__A549__trt_cp \n", " 1 \n", " BRD-K96703623__HT29__trt_cp \n", " 1 \n", " BRD-K97149069__SKB__trt_cp \n", " 1 \n", " BRD-K97255584__VCAP__trt_cp \n", " 1 \n", " BRD-K97936712__VCAP__trt_cp \n", " 1 \n", " BRD-K98645985__A549__trt_cp \n", " 1 \n", " BRD-K98731749__VCAP__trt_cp \n", " 1 \n", " BRD-K98945308__NEU__trt_cp \n", " 1 \n", " BRD-K98991361__A549__trt_cp \n", " 1 \n", " BRD-K99636700__HCC515__trt_cp \n", " 1 \n", " BRD-K99737413__A375__trt_cp \n", " 1 \n", " BRD-K99756483__PC3__trt_cp \n", " 1 \n", " brefeldin-a__MCF7__trt_cp \n", " 1 \n", " brefeldin-a__PC3__trt_cp \n", " 1 \n", " BRL-37344__HA1E__trt_cp \n", " 1 \n", " brucine__PC3__trt_cp \n", " 1 \n", " budesonide__HCC515__trt_cp \n", " 1 \n", " bufalin__HA1E__trt_cp \n", " 1 \n", " buphenine__HCC515__trt_cp \n", " 1 \n", " butoconazole__HCC515__trt_cp \n", " 1 \n", " butoconazole__PHH__trt_cp \n", " 1 \n", " BX-795__HT29__trt_cp \n", " 1 \n", " C2-dihydroceramide__NEU__trt_cp \n", " 1 \n", " CA-074-Me__A375__trt_cp \n", " 1 \n", " caffeic-acid__NEU__trt_cp \n", " 1 \n", " calmidazolium__ASC__trt_cp \n", " 1 \n", " calycanthine__A549__trt_cp \n", " 1 \n", " camptothecin__MCF7__trt_cp \n", " 1 \n", " carbetocin__VCAP__trt_cp \n", " 1 \n", " CAY-10415__VCAP__trt_cp \n", " 1 \n", " CCMQ__ASC__trt_cp \n", " 1 \n", " cefotiam__MCF7__trt_cp \n", " 1 \n", " celecoxib__A549__trt_cp \n", " 1 \n", " cephaeline__HA1E__trt_cp \n", " 1 \n", " cerivastatin__PC3__trt_cp \n", " 1 \n", " CFM-1571__HCC515__trt_cp \n", " 1 \n", " CGS-21680__ASC__trt_cp \n", " 1 \n", " chelidonine__HT29__trt_cp \n", " 1 \n", " chloroxine__ASC__trt_cp \n", " 1 \n", " chloroxine__HA1E__trt_cp \n", " 1 \n", " ciglitazone__SKB__trt_cp \n", " 1 \n", " cinalukast__PHH__trt_cp \n", " 1 \n", " cinobufagin__HA1E__trt_cp \n", " 1 \n", " CL-82198__MCF7__trt_cp \n", " 1 \n", " clioquinol__HT29__trt_cp \n", " 1 \n", " CMPD-1__A375__trt_cp \n", " 1 \n", " cortisone-acetate__PC3__trt_cp \n", " 1 \n", " crizotinib__NPC__trt_cp \n", " 1 \n", " CS-110266__ASC__trt_cp \n", " 1 \n", " CT-200783__VCAP__trt_cp \n", " 1 \n", " cucurbitacin-i__HT29__trt_cp \n", " 1 \n", " cycloheximide__ASC__trt_cp \n", " 1 \n", " cycloheximide__NEU__trt_cp \n", " 1 \n", " cycloheximide__SKB__trt_cp \n", " 1 \n", " cyclopentene__A549__trt_cp \n", " 1 \n", " cymarin__HA1E__trt_cp \n", " 1 \n", " cymarin__NPC__trt_cp \n", " 1 \n", " cyproterone__HCC515__trt_cp \n", " 1 \n", " cytochalasin-d__MCF7__trt_cp \n", " 1 \n", " dactinomycin__VCAP__trt_cp \n", " 1 \n", " dantrolene__PHH__trt_cp \n", " 1 \n", " danusertib__NEU__trt_cp \n", " 1 \n", " daunorubicin__NEU__trt_cp \n", " 1 \n", " daunorubicin__NPC__trt_cp \n", " 1 \n", " DCEBIO__PHH__trt_cp \n", " 1 \n", " decitabine__NPC__trt_cp \n", " 1 \n", " dehydrocholate__SKB__trt_cp \n", " 1 \n", " desoxycortone__NEU__trt_cp \n", " 1 \n", " desoxycortone__SKB__trt_cp \n", " 1 \n", " dexamethasone__PHH__trt_cp \n", " 1 \n", " dexrazoxane__PHH__trt_cp \n", " 1 \n", " dextromethorphan__NPC__trt_cp \n", " 1 \n", " dibutyrylcyclic-gmp__A549__trt_cp \n", " 1 \n", " dicyclohexylurea__SKB__trt_cp \n", " 1 \n", " digitoxigenin__HA1E__trt_cp \n", " 1 \n", " digoxigenin__HA1E__trt_cp \n", " 1 \n", " digoxin__HA1E__trt_cp \n", " 1 \n", " dihydroergocristine__HA1E__trt_cp \n", " 1 \n", " dihydroergotamine__PHH__trt_cp \n", " 1 \n", " diltiazem__ASC__trt_cp \n", " 1 \n", " diosmin__PC3__trt_cp \n", " 1 \n", " diphenyleneiodonium__MCF7__trt_cp \n", " 1 \n", " dipyridamole__PHH__trt_cp \n", " 1 \n", " dorsomorphin__HCC515__trt_cp \n", " 1 \n", " doxercalciferol__NEU__trt_cp \n", " 1 \n", " doxorubicin__VCAP__trt_cp \n", " 1 \n", " doxylamine__MCF7__trt_cp \n", " 1 \n", " doxylamine__VCAP__trt_cp \n", " 1 \n", " EI-231__NEU__trt_cp \n", " 1 \n", " EMF-bca1-16__VCAP__trt_cp \n", " 1 \n", " EMF-sumo1-9__ASC__trt_cp \n", " 1 \n", " emodic-acid__HA1E__trt_cp \n", " 1 \n", " ENMD-2076__A375__trt_cp \n", " 1 \n", " entinostat__HEPG2__trt_cp \n", " 1 \n", " ephedrine__FIBRNPC__trt_cp \n", " 1 \n", " epitestosterone__VCAP__trt_cp \n", " 1 \n", " eplerenone__SKB__trt_cp \n", " 1 \n", " ER-27319__NPC__trt_cp \n", " 1 \n", " ER-27319__PHH__trt_cp \n", " 1 \n", " esculin__SKB__trt_cp \n", " 1 \n", " everolimus__A549__trt_cp \n", " 1 \n", " evodiamine__HT29__trt_cp \n", " 1 \n", " F-1061-0166__NEU__trt_cp \n", " 1 \n", " FCCP__HCC515__trt_cp \n", " 1 \n", " FCCP__MCF7__trt_cp \n", " 1 \n", " fenoterol__HA1E__trt_cp \n", " 1 \n", " fenretinide__A549__trt_cp \n", " 1 \n", " fenretinide__NPC__trt_cp \n", " 1 \n", " fluconazole__HCC515__trt_cp \n", " 1 \n", " fludarabine__NEU__trt_cp \n", " 1 \n", " fludrocortisone-acetate__A375__trt_cp \n", " 1 \n", " fluocinolone-acetonide__HT29__trt_cp \n", " 1 \n", " fluprostenol__VCAP__trt_cp \n", " 1 \n", " formestane__VCAP__trt_cp \n", " 1 \n", " formoterol__SKB__trt_cp \n", " 1 \n", " FPL-64176__PHH__trt_cp \n", " 1 \n", " gitoxigenin__NPC__trt_cp \n", " 1 \n", " glycocholic-acid__PHH__trt_cp \n", " 1 \n", " glycodeoxycholic-acid__NEU__trt_cp \n", " 1 \n", " GR-159897__HCC515__trt_cp \n", " 1 \n", " GR-206__ASC__trt_cp \n", " 1 \n", " GR-235__NEU__trt_cp \n", " 1 \n", " GSK-3-inhibitor-II__HA1E__trt_cp \n", " 1 \n", " GSK-3-inhibitor-IX__SKBR3__trt_cp \n", " 1 \n", " GSK-429286A__HS578T__trt_cp \n", " 1 \n", " GSK-461364__VCAP__trt_cp \n", " 1 \n", " GW-1929__NPC__trt_cp \n", " 1 \n", " GW-1929__VCAP__trt_cp \n", " 1 \n", " GW-7647__ASC__trt_cp \n", " 1 \n", " GW-9508__HA1E__trt_cp \n", " 1 \n", " HA-14-1__NEU__trt_cp \n", " 1 \n", " hexamethyleneamiloride__PHH__trt_cp \n", " 1 \n", " HO-013__A549__trt_cp \n", " 1 \n", " HO-013__SKB__trt_cp \n", " 1 \n", " homoharringtonine__SKB__trt_cp \n", " 1 \n", " HU-211__NPC__trt_cp \n", " 1 \n", " hydrocortisone-valerate__ASC__trt_cp \n", " 1 \n", " icilin__NPC__trt_cp \n", " 1 \n", " IKK-16__HCC515__trt_cp \n", " 1 \n", " IKK-2-inhibitor-V__HEPG2__trt_cp \n", " 1 \n", " IKK-2-inhibitor-V__HUH7__trt_cp \n", " 1 \n", " ipratropium__A549__trt_cp \n", " 1 \n", " ipratropium__NPC__trt_cp \n", " 1 \n", " irsogladine__HA1E__trt_cp \n", " 1 \n", " isocarboxazid__HCC515__trt_cp \n", " 1 \n", " ixazomib__NKDBA__trt_cp \n", " 1 \n", " J-104129__HCC515__trt_cp \n", " 1 \n", " JAS07-005__VCAP__trt_cp \n", " 1 \n", " JX-401__PHH__trt_cp \n", " 1 \n", " KF-38789__NPC__trt_cp \n", " 1 \n", " khellin__PC3__trt_cp \n", " 1 \n", " KI-8751__HA1E__trt_cp \n", " 1 \n", " KI-8751__PHH__trt_cp \n", " 1 \n", " kinetin-riboside__A375__trt_cp \n", " 1 \n", " KM-00799__A549__trt_cp \n", " 1 \n", " KM-00927__MCF7__trt_cp \n", " 1 \n", " KM-01366__A549__trt_cp \n", " 1 \n", " KM-04644SC__A549__trt_cp \n", " 1 \n", " KU-0060648__HCC515__trt_cp \n", " 1 \n", " KU-0060648__PC3__trt_cp \n", " 1 \n", " KU-C103656__A549__trt_cp \n", " 1 \n", " KU-C103898N__A549__trt_cp \n", " 1 \n", " KU-C104140__A549__trt_cp \n", " 1 \n", " KUC103424N__A549__trt_cp \n", " 1 \n", " L-161982__PHH__trt_cp \n", " 1 \n", " L-168049__VCAP__trt_cp \n", " 1 \n", " L-701252__ASC__trt_cp \n", " 1 \n", " lamotrigine__NEU__trt_cp \n", " 1 \n", " lanatoside-c__VCAP__trt_cp \n", " 1 \n", " lasalocid__ASC__trt_cp \n", " 1 \n", " latrunculin-b__A549__trt_cp \n", " 1 \n", " LBH-589__NEU__trt_cp \n", " 1 \n", " LBH-589__NPC__trt_cp \n", " 1 \n", " LDN-193189__MCF10A__trt_cp \n", " 1 \n", " letrozole__A549__trt_cp \n", " 1 \n", " leucodin__HA1E__trt_cp \n", " 1 \n", " linifanib__PHH__trt_cp \n", " 1 \n", " lobeline__MCF7__trt_cp \n", " 1 \n", " lobendazole__PHH__trt_cp \n", " 1 \n", " lobendazole__SKB__trt_cp \n", " 1 \n", " LY-165163__NEU__trt_cp \n", " 1 \n", " LY-2140023__VCAP__trt_cp \n", " 1 \n", " LY-2183240__HT29__trt_cp \n", " 1 \n", " LY-2183240__NPC__trt_cp \n", " 1 \n", " LY-225910__VCAP__trt_cp \n", " 1 \n", " LY-341495__HA1E__trt_cp \n", " 1 \n", " M-344__NPC__trt_cp \n", " 1 \n", " m-3M3FBS__A549__trt_cp \n", " 1 \n", " mafenide__A549__trt_cp \n", " 1 \n", " malonoben__HA1E__trt_cp \n", " 1 \n", " MAZ-51__HT29__trt_cp \n", " 1 \n", " MD-II-038__NPC__trt_cp \n", " 1 \n", " meclizine__NPC__trt_cp \n", " 1 \n", " mefenamic-acid__PHH__trt_cp \n", " 1 \n", " mefenamic-acid__VCAP__trt_cp \n", " 1 \n", " melperone__HCC515__trt_cp \n", " 1 \n", " mepenzolate__PC3__trt_cp \n", " 1 \n", " methyl-2,5-dihydroxycinnamate__HA1E__trt_cp \n", " 1 \n", " methyl-2,5-dihydroxycinnamate__NPC__trt_cp \n", " 1 \n", " methylene-blue__HA1E__trt_cp \n", " 1 \n", " mevastatin__A549__trt_cp \n", " 1 \n", " mexiletine__HA1E__trt_cp \n", " 1 \n", " MG-132__VCAP__trt_cp \n", " 1 \n", " mifepristone__MCF7__trt_cp \n", " 1 \n", " milrinone__PHH__trt_cp \n", " 1 \n", " mirin__VCAP__trt_cp \n", " 1 \n", " mirtazapine__SKB__trt_cp \n", " 1 \n", " mitoxantrone__HT29__trt_cp \n", " 1 \n", " MK-1775__HT29__trt_cp \n", " 1 \n", " mocetinostat__ASC__trt_cp \n", " 1 \n", " mocimycin__A549__trt_cp \n", " 1 \n", " mometasone__PHH__trt_cp \n", " 1 \n", " monensin__PC3__trt_cp \n", " 1 \n", " motesanib__HS578T__trt_cp \n", " 1 \n", " MPEP__FIBRNPC__trt_cp \n", " 1 \n", " MRS-1220__HA1E__trt_cp \n", " 1 \n", " MRS-1845__HCC515__trt_cp \n", " 1 \n", " n-bromoacetyltryptamine__FIBRNPC__trt_cp \n", " 1 \n", " napelline__HT29__trt_cp \n", " 1 \n", " naproxen__PC3__trt_cp \n", " 1 \n", " narciclasine__A375__trt_cp \n", " 1 \n", " narciclasine__HA1E__trt_cp \n", " 1 \n", " narciclasine__HT29__trt_cp \n", " 1 \n", " nateglinide__PHH__trt_cp \n", " 1 \n", " NCH-51__NPC__trt_cp \n", " 1 \n", " NGB-2904__SKB__trt_cp \n", " 1 \n", " nicergoline__A549__trt_cp \n", " 1 \n", " niclosamide__HCC515__trt_cp \n", " 1 \n", " nimesulide__NEU__trt_cp \n", " 1 \n", " NNC-711__VCAP__trt_cp \n", " 1 \n", " nocodazole__FIBRNPC__trt_cp \n", " 1 \n", " nocodazole__NPC__trt_cp \n", " 1 \n", " NS-3694__VCAP__trt_cp \n", " 1 \n", " NSC-3852__HA1E__trt_cp \n", " 1 \n", " NSC-632839__VCAP__trt_cp \n", " 1 \n", " NSC-663284__HA1E__trt_cp \n", " 1 \n", " NSC-94258__MCF7__trt_cp \n", " 1 \n", " ofloxacin__VCAP__trt_cp \n", " 1 \n", " ON-01910__BT20__trt_cp \n", " 1 \n", " ON-01910__VCAP__trt_cp \n", " 1 \n", " orphenadrine__HCC515__trt_cp \n", " 1 \n", " ouabain__HA1E__trt_cp \n", " 1 \n", " ouabain__NEU__trt_cp \n", " 1 \n", " oxamflatin__NEU__trt_cp \n", " 1 \n", " oxamflatin__NPC__trt_cp \n", " 1 \n", " oxcarbazepine__MCF7__trt_cp \n", " 1 \n", " PAC-1__A375__trt_cp \n", " 1 \n", " palmitoylethanolamide__NPC__trt_cp \n", " 1 \n", " panobinostat__ASC__trt_cp \n", " 1 \n", " panobinostat__HCC515__trt_cp \n", " 1 \n", " panobinostat__MCF7__trt_cp \n", " 1 \n", " parecoxib__VCAP__trt_cp \n", " 1 \n", " paroxetine__PHH__trt_cp \n", " 1 \n", " PCI-24781__HCC515__trt_cp \n", " 1 \n", " PCI-34051__NEU__trt_cp \n", " 1 \n", " PD-0325901__BT20__trt_cp \n", " 1 \n", " PD-0325901__HS578T__trt_cp \n", " 1 \n", " PD-0325901__MDAMB231__trt_cp \n", " 1 \n", " PD-198306__HA1E__trt_cp \n", " 1 \n", " PD-407824__HA1E__trt_cp \n", " 1 \n", " PD-407824__PHH__trt_cp \n", " 1 \n", " penfluridol__NPC__trt_cp \n", " 1 \n", " perindopril__PHH__trt_cp \n", " 1 \n", " periplocymarin__HA1E__trt_cp \n", " 1 \n", " peruvoside__VCAP__trt_cp \n", " 1 \n", " PHA-665752__MCF10A__trt_cp \n", " 1 \n", " phentolamine__A549__trt_cp \n", " 1 \n", " phenylbutazone__HCC515__trt_cp \n", " 1 \n", " physostigmine__PHH__trt_cp \n", " 1 \n", " PIK-75__PHH__trt_cp \n", " 1 \n", " pirarubicin__NEU__trt_cp \n", " 1 \n", " pivmecillinam__A549__trt_cp \n", " 1 \n", " PNU-22394__VCAP__trt_cp \n", " 1 \n", " podophyllotoxin__NPC__trt_cp \n", " 1 \n", " prednisolone__PHH__trt_cp \n", " 1 \n", " proadifen__ASC__trt_cp \n", " 1 \n", " proadifen__NEU__trt_cp \n", " 1 \n", " proadifen__NPC__trt_cp \n", " 1 \n", " probucol__VCAP__trt_cp \n", " 1 \n", " procainamide__VCAP__trt_cp \n", " 1 \n", " procaterol__HCC515__trt_cp \n", " 1 \n", " PSH-003__HT29__trt_cp \n", " 1 \n", " puromycin__VCAP__trt_cp \n", " 1 \n", " pyrvinium__MCF7__trt_cp \n", " 1 \n", " QL-X-138__MCF10A__trt_cp \n", " 1 \n", " QL-X-138__NEU__trt_cp \n", " 1 \n", " quinapril__NEU__trt_cp \n", " 1 \n", " quinapril__NPC__trt_cp \n", " 1 \n", " R-59022__HA1E__trt_cp \n", " 1 \n", " ramipril__A549__trt_cp \n", " 1 \n", " RDR-01440SC__VCAP__trt_cp \n", " 1 \n", " remoxipride__A549__trt_cp \n", " 1 \n", " resmethrin__HT29__trt_cp \n", " 1 \n", " rifapentine__VCAP__trt_cp \n", " 1 \n", " rizatriptan__SKB__trt_cp \n", " 1 \n", " Ro-08-2750__HA1E__trt_cp \n", " 1 \n", " Ro-15-4513__VCAP__trt_cp \n", " 1 \n", " Ro-19-4605__HCC515__trt_cp \n", " 1 \n", " rosmarinic-acid__NPC__trt_cp \n", " 1 \n", " RS-45041-190__VCAP__trt_cp \n", " 1 \n", " RU-28318__HA1E__trt_cp \n", " 1 \n", " ryuvidine__NPC__trt_cp \n", " 1 \n", " SA-1447005__A549__trt_cp \n", " 1 \n", " SA-1447005__VCAP__trt_cp \n", " 1 \n", " SA-1456456__NKDBA__trt_cp \n", " 1 \n", " SA-1457415__NKDBA__trt_cp \n", " 1 \n", " SA-1921617__NEU__trt_cp \n", " 1 \n", " SA-1925610__MCF7__trt_cp \n", " 1 \n", " SA-3676__NKDBA__trt_cp \n", " 1 \n", " SA-419083__NPC__trt_cp \n", " 1 \n", " SA-89068__A549__trt_cp \n", " 1 \n", " sarmentogenin__HA1E__trt_cp \n", " 1 \n", " SB-218078__HA1E__trt_cp \n", " 1 \n", " SB-239063__NPC__trt_cp \n", " 1 \n", " SB-239063__SKB__trt_cp \n", " 1 \n", " SB-415286__SKB__trt_cp \n", " 1 \n", " SB-431542__NPC__trt_cp \n", " 1 \n", " SB-590885__NPC__trt_cp \n", " 1 \n", " SCH-79797__MCF7__trt_cp \n", " 1 \n", " scoulerine__PHH__trt_cp \n", " 1 \n", " scriptaid__FIBRNPC__trt_cp \n", " 1 \n", " securinine__U937__trt_cp \n", " 1 \n", " sertaconazole__HA1E__trt_cp \n", " 1 \n", " SKI-II__A549__trt_cp \n", " 1 \n", " somatostatin__NEU__trt_cp \n", " 1 \n", " sorafenib__HEK293T__trt_cp \n", " 1 \n", " sorafenib__VCAP__trt_cp \n", " 1 \n", " sphingosine__PC3__trt_cp \n", " 1 \n", " spiramide__HEPG2__trt_cp \n", " 1 \n", " SR-12813__NEU__trt_cp \n", " 1 \n", " SR-142948__ASC__trt_cp \n", " 1 \n", " SR-142948__SKB__trt_cp \n", " 1 \n", " ST-4029010__NEU__trt_cp \n", " 1 \n", " ST-638__HA1E__trt_cp \n", " 1 \n", " staurosporine__A375__trt_cp \n", " 1 \n", " STK-397047__NEU__trt_cp \n", " 1 \n", " strophanthidin__HA1E__trt_cp \n", " 1 \n", " SU-1498__NPC__trt_cp \n", " 1 \n", " sunitinib__A549__trt_cp \n", " 1 \n", " SYK-inhibitor__HA1E__trt_cp \n", " 1 \n", " SYK-inhibitor__HS578T__trt_cp \n", " 1 \n", " SYK-inhibitor__NPC__trt_cp \n", " 1 \n", " SYK-inhibitor__SKBR3__trt_cp \n", " 1 \n", " tacrolimus__NEU__trt_cp \n", " 1 \n", " tangeritin__PHH__trt_cp \n", " 1 \n", " tegafur__A549__trt_cp \n", " 1 \n", " temozolomide__NEU__trt_cp \n", " 1 \n", " teniposide__NPC__trt_cp \n", " 1 \n", " tert-butylhydroquinone__MCF7__trt_cp \n", " 1 \n", " tetrabenazine__NEU__trt_cp \n", " 1 \n", "tetrahydrocannabinol-7-oic-acid__HA1E__trt_cp \n", " 1 \n", " thalidomide__HA1E__trt_cp \n", " 1 \n", " thapsigargin__HA1E__trt_cp \n", " 1 \n", " thioproperazine__VCAP__trt_cp \n", " 1 \n", " thiorphan__ASC__trt_cp \n", " 1 \n", " tolcapone__FIBRNPC__trt_cp \n", " 1 \n", " tolmetin__ASC__trt_cp \n", " 1 \n", " tolterodine__VCAP__trt_cp \n", " 1 \n", " toremifene__MCF7__trt_cp \n", " 1 \n", " torin-2__PHH__trt_cp \n", " 1 \n", " tranilast__PHH__trt_cp \n", " 1 \n", " triamcinolone__HCC515__trt_cp \n", " 1 \n", " tributyltin__HA1E__trt_cp \n", " 1 \n", " trichostatin-a__HCC515__trt_cp \n", " 1 \n", " trichostatin-a__NPC__trt_cp \n", " 1 \n", " trimetozine__HA1E__trt_cp \n", " 1 \n", " triphenyl-tin__HA1E__trt_cp \n", " 1 \n", " tubacin__PC3__trt_cp \n", " 1 \n", " tyrphostin-A9__HUH7__trt_cp \n", " 1 \n", " tyrphostin-AG-825__MCF7__trt_cp \n", " 1 \n", " U-0126__HEPG2__trt_cp \n", " 1 \n", " ubenimex__VCAP__trt_cp \n", " 1 \n", " vinblastine__HUH7__trt_cp \n", " 1 \n", " vinblastine__NEU__trt_cp \n", " 1 \n", " vorinostat__NEU__trt_cp \n", " 1 \n", " vorinostat__NPC__trt_cp \n", " 1 \n", " VU-0400071-3__A549__trt_cp \n", " 1 \n", " VU-0420363-1__VCAP__trt_cp \n", " 1 \n", " VU-0447127-2__MCF7__trt_cp \n", " 1 \n", " WAY-213613__A549__trt_cp \n", " 1 \n", " WH-4025__ASC__trt_cp \n", " 1 \n", " WHI-P154__PHH__trt_cp \n", " 1 \n", " WT-171__PHH__trt_cp \n", " 1 \n", " WYE-125132__MCF7__trt_cp \n", " 1 \n", " WYE-354__ASC__trt_cp \n", " 1 \n", " WZ-3105__NPC__trt_cp \n", " 1 \n", " YK-4279__HT29__trt_cp \n", " 1 \n", " YM-155__NEU__trt_cp \n", " 1 \n", " zaprinast__HA1E__trt_cp \n", " 1 \n", " zebularine__FIBRNPC__trt_cp \n", " 1 \n", " zosuquidar__PHH__trt_cp \n", " 1 " ] }, "metadata": {}, "output_type": "display_data" } ], "source": [ "#### which drug can target multiple TFs at the one experiment\n", "multi.TFs <- sapply(drug.lists, function(x){\n", " return(rownames(x))\n", "})\n", "drugs <- unlist(multi.TFs)\n", "sort(table(drugs),decreasing = T)" ] }, { "cell_type": "code", "execution_count": 34, "id": "a4eda857-0d7a-4a50-bf1b-14d50537f4a8", "metadata": { "execution": { "iopub.execute_input": "2021-09-23T06:22:32.923192Z", "iopub.status.busy": "2021-09-23T06:22:32.919656Z", "iopub.status.idle": "2021-09-23T06:22:33.015687Z", "shell.execute_reply": "2021-09-23T06:22:33.014391Z" }, "tags": [], "vscode": { "languageId": "r" } }, "outputs": [ { "data": { "text/html": [ "\n", "\n", "\n", "\t\n", "\t\n", "\n", "\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", 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A data.frame: 326 × 5
DrugTFZSCOREDrug.namecellLine
<chr><chr><dbl><fct><chr>
alpha-tocopherol__MCF7__trt_cpISL1 -2.502400alpha-tocopherolMCF7
alpha-tocopherol__PC3__trt_cp ISL1 -2.310900alpha-tocopherolPC3
anisomycin__NEU__trt_cp HOXC5-2.530992anisomycin NEU
anisomycin__ASC__trt_cp ISL1 -2.111786anisomycin ASC
apicidin__HEPG2__trt_cp HOXC5-2.335700apicidin HEPG2
apicidin__A375__trt_cp ISL1 -2.681550apicidin A375
BG-1003__NEU__trt_cp ISL1 -2.279669BG-1003 NEU
BG-1003__NPC__trt_cp ISL1 -2.050464BG-1003 NPC
BG-1025__NEU__trt_cp ISL1 -2.330200BG-1025 NEU
BG-1025__NPC__trt_cp ISL1 -2.107575BG-1025 NPC
BML-257__NEU__trt_cp ISL1 -5.686600BML-257 NEU
BML-257__NEU__trt_cp VENTX-3.350300BML-257 NEU
BMY-14802__NPC__trt_cp ISL1 -2.252357BMY-14802 NPC
BMY-14802__PHH__trt_cp ISL1 -2.118578BMY-14802 PHH
BRD-A68274214__NEU__trt_cp ISL1 -2.049750BRD-A68274214 NEU
BRD-A68274214__VCAP__trt_cp VENTX-2.685372BRD-A68274214 VCAP
BRD-K02223034__A549__trt_cp ISL1 -2.238800BRD-K02223034 A549
BRD-K02223034__SKB__trt_cp ISL1 -2.220776BRD-K02223034 SKB
BRD-K25731886__A549__trt_cp ISL1 -4.073600BRD-K25731886 A549
BRD-K25731886__NEU__trt_cp ISL1 -2.935900BRD-K25731886 NEU
BRD-K44893543__NEU__trt_cp HOXC5-2.403568BRD-K44893543 NEU
BRD-K44893543__NEU__trt_cp VENTX-2.608974BRD-K44893543 NEU
BRD-K66884694__MCF7__trt_cp ISL1 -2.475050BRD-K66884694 MCF7
BRD-K66884694__VCAP__trt_cp ISL1 -2.011937BRD-K66884694 VCAP
BRD-K98731749__NEU__trt_cp ISL1 -3.041465BRD-K98731749 NEU
BRD-K98731749__VCAP__trt_cp VENTX-2.255098BRD-K98731749 VCAP
butoconazole__PHH__trt_cp ISL1 -2.217050butoconazole PHH
butoconazole__HCC515__trt_cp VENTX-2.043097butoconazole HCC515
cucurbitacin-i__MCF7__trt_cp HOXC5-2.504937cucurbitacin-i MCF7
cucurbitacin-i__MCF7__trt_cp ISL1 -2.131572cucurbitacin-i MCF7
SEW-05685__VCAP__trt_cp VENTX-2.412868SEW-05685 VCAP
SJ-172550__VCAP__trt_cp VENTX-2.893954SJ-172550 VCAP
sorafenib__VCAP__trt_cp HOXC5-2.387828sorafenib VCAP
SQ-22536__NPC__trt_cp HOXC5-2.024650SQ-22536 NPC
SR-12813__NEU__trt_cp ISL1 -2.061450SR-12813 NEU
ST-4029010__NEU__trt_cp HOXC5-2.160550ST-4029010 NEU
ST-638__HA1E__trt_cp ISL1 -2.139165ST-638 HA1E
staurosporine__A375__trt_cp ISL1 -3.507200staurosporine A375
STK-397047__NEU__trt_cp ISL1 -2.067650STK-397047 NEU
STOCK1S-03920__MCF7__trt_cp ISL1 -2.238906STOCK1S-03920 MCF7
temozolomide__NEU__trt_cp ISL1 -2.358148temozolomide NEU
teniposide__NPC__trt_cp ISL1 -2.629349teniposide NPC
tert-butylhydroquinone__MCF7__trt_cpISL1 -3.080953tert-butylhydroquinoneMCF7
toremifene__MCF7__trt_cp HOXC5-2.111762toremifene MCF7
torin-2__PHH__trt_cp ISL1 -2.098830torin-2 PHH
tranilast__PHH__trt_cp ISL1 -3.020363tranilast PHH
treprostinil__PHH__trt_cp VENTX-2.756694treprostinil PHH
tributyltin__HA1E__trt_cp ISL1 -3.094550tributyltin HA1E
triphenyl-tin__HA1E__trt_cp ISL1 -2.005953triphenyl-tin HA1E
tubacin__VCAP__trt_cp VENTX-3.499640tubacin VCAP
tyrphostin-AG-825__MCF7__trt_cp VENTX-2.394913tyrphostin-AG-825 MCF7
ubenimex__VCAP__trt_cp ISL1 -2.167702ubenimex VCAP
verrucarin-a__NEU__trt_cp HOXC5-2.535550verrucarin-a NEU
verteporfin__VCAP__trt_cp VENTX-2.372383verteporfin VCAP
vinblastine__PHH__trt_cp ISL1 -2.215100vinblastine PHH
WYE-125132__MCF7__trt_cp HOXC5-2.019033WYE-125132 MCF7
WYE-354__ASC__trt_cp HOXC5-2.030976WYE-354 ASC
WZ-3105__NPC__trt_cp ISL1 -2.444200WZ-3105 NPC
YM-155__NPC__trt_cp ISL1 -2.259500YM-155 NPC
zoxazolamine__PHH__trt_cp VENTX-2.148100zoxazolamine PHH
\n" ], "text/latex": [ "A data.frame: 326 × 5\n", "\\begin{tabular}{lllll}\n", " Drug & TF & ZSCORE & Drug.name & cellLine\\\\\n", " & & & & \\\\\n", "\\hline\n", "\t alpha-tocopherol\\_\\_MCF7\\_\\_trt\\_cp & ISL1 & -2.502400 & alpha-tocopherol & MCF7 \\\\\n", "\t alpha-tocopherol\\_\\_PC3\\_\\_trt\\_cp & ISL1 & -2.310900 & alpha-tocopherol & PC3 \\\\\n", "\t anisomycin\\_\\_NEU\\_\\_trt\\_cp & HOXC5 & -2.530992 & anisomycin & NEU \\\\\n", "\t anisomycin\\_\\_ASC\\_\\_trt\\_cp & ISL1 & -2.111786 & anisomycin & ASC \\\\\n", "\t apicidin\\_\\_HEPG2\\_\\_trt\\_cp & HOXC5 & -2.335700 & apicidin & HEPG2 \\\\\n", "\t apicidin\\_\\_A375\\_\\_trt\\_cp & ISL1 & -2.681550 & apicidin & A375 \\\\\n", "\t BG-1003\\_\\_NEU\\_\\_trt\\_cp & ISL1 & -2.279669 & BG-1003 & NEU \\\\\n", "\t BG-1003\\_\\_NPC\\_\\_trt\\_cp & ISL1 & -2.050464 & BG-1003 & NPC \\\\\n", "\t BG-1025\\_\\_NEU\\_\\_trt\\_cp & ISL1 & -2.330200 & BG-1025 & NEU \\\\\n", "\t BG-1025\\_\\_NPC\\_\\_trt\\_cp & ISL1 & -2.107575 & BG-1025 & NPC \\\\\n", "\t BML-257\\_\\_NEU\\_\\_trt\\_cp & ISL1 & -5.686600 & BML-257 & NEU \\\\\n", "\t BML-257\\_\\_NEU\\_\\_trt\\_cp & VENTX & -3.350300 & BML-257 & NEU \\\\\n", "\t BMY-14802\\_\\_NPC\\_\\_trt\\_cp & ISL1 & -2.252357 & BMY-14802 & NPC \\\\\n", "\t BMY-14802\\_\\_PHH\\_\\_trt\\_cp & ISL1 & -2.118578 & BMY-14802 & PHH \\\\\n", "\t BRD-A68274214\\_\\_NEU\\_\\_trt\\_cp & ISL1 & -2.049750 & BRD-A68274214 & NEU \\\\\n", "\t BRD-A68274214\\_\\_VCAP\\_\\_trt\\_cp & VENTX & -2.685372 & BRD-A68274214 & VCAP \\\\\n", "\t BRD-K02223034\\_\\_A549\\_\\_trt\\_cp & ISL1 & -2.238800 & BRD-K02223034 & A549 \\\\\n", "\t BRD-K02223034\\_\\_SKB\\_\\_trt\\_cp & ISL1 & -2.220776 & BRD-K02223034 & SKB \\\\\n", "\t BRD-K25731886\\_\\_A549\\_\\_trt\\_cp & ISL1 & -4.073600 & BRD-K25731886 & A549 \\\\\n", "\t BRD-K25731886\\_\\_NEU\\_\\_trt\\_cp & ISL1 & -2.935900 & BRD-K25731886 & NEU \\\\\n", "\t BRD-K44893543\\_\\_NEU\\_\\_trt\\_cp & HOXC5 & -2.403568 & BRD-K44893543 & NEU \\\\\n", "\t BRD-K44893543\\_\\_NEU\\_\\_trt\\_cp & VENTX & -2.608974 & BRD-K44893543 & NEU \\\\\n", "\t BRD-K66884694\\_\\_MCF7\\_\\_trt\\_cp & ISL1 & -2.475050 & BRD-K66884694 & MCF7 \\\\\n", "\t BRD-K66884694\\_\\_VCAP\\_\\_trt\\_cp & ISL1 & -2.011937 & BRD-K66884694 & VCAP \\\\\n", "\t BRD-K98731749\\_\\_NEU\\_\\_trt\\_cp & ISL1 & -3.041465 & BRD-K98731749 & NEU \\\\\n", "\t BRD-K98731749\\_\\_VCAP\\_\\_trt\\_cp & VENTX & -2.255098 & BRD-K98731749 & VCAP \\\\\n", "\t butoconazole\\_\\_PHH\\_\\_trt\\_cp & ISL1 & -2.217050 & butoconazole & PHH \\\\\n", "\t butoconazole\\_\\_HCC515\\_\\_trt\\_cp & VENTX & -2.043097 & butoconazole & HCC515\\\\\n", "\t cucurbitacin-i\\_\\_MCF7\\_\\_trt\\_cp & HOXC5 & -2.504937 & cucurbitacin-i & MCF7 \\\\\n", "\t cucurbitacin-i\\_\\_MCF7\\_\\_trt\\_cp & ISL1 & -2.131572 & cucurbitacin-i & MCF7 \\\\\n", "\t ⋮ & ⋮ & ⋮ & ⋮ & ⋮\\\\\n", "\t SEW-05685\\_\\_VCAP\\_\\_trt\\_cp & VENTX & -2.412868 & SEW-05685 & VCAP\\\\\n", "\t SJ-172550\\_\\_VCAP\\_\\_trt\\_cp & VENTX & -2.893954 & SJ-172550 & VCAP\\\\\n", "\t sorafenib\\_\\_VCAP\\_\\_trt\\_cp & HOXC5 & -2.387828 & sorafenib & VCAP\\\\\n", "\t SQ-22536\\_\\_NPC\\_\\_trt\\_cp & HOXC5 & -2.024650 & SQ-22536 & NPC \\\\\n", "\t SR-12813\\_\\_NEU\\_\\_trt\\_cp & ISL1 & -2.061450 & SR-12813 & NEU \\\\\n", "\t ST-4029010\\_\\_NEU\\_\\_trt\\_cp & HOXC5 & -2.160550 & ST-4029010 & NEU \\\\\n", "\t ST-638\\_\\_HA1E\\_\\_trt\\_cp & ISL1 & -2.139165 & ST-638 & HA1E\\\\\n", "\t staurosporine\\_\\_A375\\_\\_trt\\_cp & ISL1 & -3.507200 & staurosporine & A375\\\\\n", "\t STK-397047\\_\\_NEU\\_\\_trt\\_cp & ISL1 & -2.067650 & STK-397047 & NEU \\\\\n", "\t STOCK1S-03920\\_\\_MCF7\\_\\_trt\\_cp & ISL1 & -2.238906 & STOCK1S-03920 & MCF7\\\\\n", "\t temozolomide\\_\\_NEU\\_\\_trt\\_cp & ISL1 & -2.358148 & temozolomide & NEU \\\\\n", "\t teniposide\\_\\_NPC\\_\\_trt\\_cp & ISL1 & -2.629349 & teniposide & NPC \\\\\n", "\t tert-butylhydroquinone\\_\\_MCF7\\_\\_trt\\_cp & ISL1 & -3.080953 & tert-butylhydroquinone & MCF7\\\\\n", "\t toremifene\\_\\_MCF7\\_\\_trt\\_cp & HOXC5 & -2.111762 & toremifene & MCF7\\\\\n", "\t torin-2\\_\\_PHH\\_\\_trt\\_cp & ISL1 & -2.098830 & torin-2 & PHH \\\\\n", "\t tranilast\\_\\_PHH\\_\\_trt\\_cp & ISL1 & -3.020363 & tranilast & PHH \\\\\n", "\t treprostinil\\_\\_PHH\\_\\_trt\\_cp & VENTX & -2.756694 & treprostinil & PHH \\\\\n", "\t tributyltin\\_\\_HA1E\\_\\_trt\\_cp & ISL1 & -3.094550 & tributyltin & HA1E\\\\\n", "\t triphenyl-tin\\_\\_HA1E\\_\\_trt\\_cp & ISL1 & -2.005953 & triphenyl-tin & HA1E\\\\\n", "\t tubacin\\_\\_VCAP\\_\\_trt\\_cp & VENTX & -3.499640 & tubacin & VCAP\\\\\n", "\t tyrphostin-AG-825\\_\\_MCF7\\_\\_trt\\_cp & VENTX & -2.394913 & tyrphostin-AG-825 & MCF7\\\\\n", "\t ubenimex\\_\\_VCAP\\_\\_trt\\_cp & ISL1 & -2.167702 & ubenimex & VCAP\\\\\n", "\t verrucarin-a\\_\\_NEU\\_\\_trt\\_cp & HOXC5 & -2.535550 & verrucarin-a & NEU \\\\\n", "\t verteporfin\\_\\_VCAP\\_\\_trt\\_cp & VENTX & -2.372383 & verteporfin & VCAP\\\\\n", "\t vinblastine\\_\\_PHH\\_\\_trt\\_cp & ISL1 & -2.215100 & vinblastine & PHH \\\\\n", "\t WYE-125132\\_\\_MCF7\\_\\_trt\\_cp & HOXC5 & -2.019033 & WYE-125132 & MCF7\\\\\n", "\t WYE-354\\_\\_ASC\\_\\_trt\\_cp & HOXC5 & -2.030976 & WYE-354 & ASC \\\\\n", "\t WZ-3105\\_\\_NPC\\_\\_trt\\_cp & ISL1 & -2.444200 & WZ-3105 & NPC \\\\\n", "\t YM-155\\_\\_NPC\\_\\_trt\\_cp & ISL1 & -2.259500 & YM-155 & NPC \\\\\n", "\t zoxazolamine\\_\\_PHH\\_\\_trt\\_cp & VENTX & -2.148100 & zoxazolamine & PHH \\\\\n", "\\end{tabular}\n" ], "text/markdown": [ "\n", "A data.frame: 326 × 5\n", "\n", "| Drug <chr> | TF <chr> | ZSCORE <dbl> | Drug.name <fct> | cellLine <chr> |\n", "|---|---|---|---|---|\n", "| alpha-tocopherol__MCF7__trt_cp | ISL1 | -2.502400 | alpha-tocopherol | MCF7 |\n", "| alpha-tocopherol__PC3__trt_cp | ISL1 | -2.310900 | alpha-tocopherol | PC3 |\n", "| anisomycin__NEU__trt_cp | HOXC5 | -2.530992 | anisomycin | NEU |\n", "| anisomycin__ASC__trt_cp | ISL1 | -2.111786 | anisomycin | ASC |\n", "| apicidin__HEPG2__trt_cp | HOXC5 | -2.335700 | apicidin | HEPG2 |\n", "| apicidin__A375__trt_cp | ISL1 | -2.681550 | apicidin | A375 |\n", "| BG-1003__NEU__trt_cp | ISL1 | -2.279669 | BG-1003 | NEU |\n", "| BG-1003__NPC__trt_cp | ISL1 | -2.050464 | BG-1003 | NPC |\n", "| BG-1025__NEU__trt_cp | ISL1 | -2.330200 | BG-1025 | NEU |\n", "| BG-1025__NPC__trt_cp | ISL1 | -2.107575 | BG-1025 | NPC |\n", "| BML-257__NEU__trt_cp | ISL1 | -5.686600 | BML-257 | NEU |\n", "| BML-257__NEU__trt_cp | VENTX | -3.350300 | BML-257 | NEU |\n", "| BMY-14802__NPC__trt_cp | ISL1 | -2.252357 | BMY-14802 | NPC |\n", "| BMY-14802__PHH__trt_cp | ISL1 | -2.118578 | BMY-14802 | PHH |\n", "| BRD-A68274214__NEU__trt_cp | ISL1 | -2.049750 | BRD-A68274214 | NEU |\n", "| BRD-A68274214__VCAP__trt_cp | VENTX | -2.685372 | BRD-A68274214 | VCAP |\n", "| BRD-K02223034__A549__trt_cp | ISL1 | -2.238800 | BRD-K02223034 | A549 |\n", "| BRD-K02223034__SKB__trt_cp | ISL1 | -2.220776 | BRD-K02223034 | SKB |\n", "| BRD-K25731886__A549__trt_cp | ISL1 | -4.073600 | BRD-K25731886 | A549 |\n", "| BRD-K25731886__NEU__trt_cp | ISL1 | -2.935900 | BRD-K25731886 | NEU |\n", "| BRD-K44893543__NEU__trt_cp | HOXC5 | -2.403568 | BRD-K44893543 | NEU |\n", "| BRD-K44893543__NEU__trt_cp | VENTX | -2.608974 | BRD-K44893543 | NEU |\n", "| BRD-K66884694__MCF7__trt_cp | ISL1 | -2.475050 | BRD-K66884694 | MCF7 |\n", "| BRD-K66884694__VCAP__trt_cp | ISL1 | -2.011937 | BRD-K66884694 | VCAP |\n", "| BRD-K98731749__NEU__trt_cp | ISL1 | -3.041465 | BRD-K98731749 | NEU |\n", "| BRD-K98731749__VCAP__trt_cp | VENTX | -2.255098 | BRD-K98731749 | VCAP |\n", "| butoconazole__PHH__trt_cp | ISL1 | -2.217050 | butoconazole | PHH |\n", "| butoconazole__HCC515__trt_cp | VENTX | -2.043097 | butoconazole | HCC515 |\n", "| cucurbitacin-i__MCF7__trt_cp | HOXC5 | -2.504937 | cucurbitacin-i | MCF7 |\n", "| cucurbitacin-i__MCF7__trt_cp | ISL1 | -2.131572 | cucurbitacin-i | MCF7 |\n", "| ⋮ | ⋮ | ⋮ | ⋮ | ⋮ |\n", "| SEW-05685__VCAP__trt_cp | VENTX | -2.412868 | SEW-05685 | VCAP |\n", "| SJ-172550__VCAP__trt_cp | VENTX | -2.893954 | SJ-172550 | VCAP |\n", "| sorafenib__VCAP__trt_cp | HOXC5 | -2.387828 | sorafenib | VCAP |\n", "| SQ-22536__NPC__trt_cp | HOXC5 | -2.024650 | SQ-22536 | NPC |\n", "| SR-12813__NEU__trt_cp | ISL1 | -2.061450 | SR-12813 | NEU |\n", "| ST-4029010__NEU__trt_cp | HOXC5 | -2.160550 | ST-4029010 | NEU |\n", "| ST-638__HA1E__trt_cp | ISL1 | -2.139165 | ST-638 | HA1E |\n", "| staurosporine__A375__trt_cp | ISL1 | -3.507200 | staurosporine | A375 |\n", "| STK-397047__NEU__trt_cp | ISL1 | -2.067650 | STK-397047 | NEU |\n", "| STOCK1S-03920__MCF7__trt_cp | ISL1 | -2.238906 | STOCK1S-03920 | MCF7 |\n", "| temozolomide__NEU__trt_cp | ISL1 | -2.358148 | temozolomide | NEU |\n", "| teniposide__NPC__trt_cp | ISL1 | -2.629349 | teniposide | NPC |\n", "| tert-butylhydroquinone__MCF7__trt_cp | ISL1 | -3.080953 | tert-butylhydroquinone | MCF7 |\n", "| toremifene__MCF7__trt_cp | HOXC5 | -2.111762 | toremifene | MCF7 |\n", "| torin-2__PHH__trt_cp | ISL1 | -2.098830 | torin-2 | PHH |\n", "| tranilast__PHH__trt_cp | ISL1 | -3.020363 | tranilast | PHH |\n", "| treprostinil__PHH__trt_cp | VENTX | -2.756694 | treprostinil | PHH |\n", "| tributyltin__HA1E__trt_cp | ISL1 | -3.094550 | tributyltin | HA1E |\n", "| triphenyl-tin__HA1E__trt_cp | ISL1 | -2.005953 | triphenyl-tin | HA1E |\n", "| tubacin__VCAP__trt_cp | VENTX | -3.499640 | tubacin | VCAP |\n", "| tyrphostin-AG-825__MCF7__trt_cp | VENTX | -2.394913 | tyrphostin-AG-825 | MCF7 |\n", "| ubenimex__VCAP__trt_cp | ISL1 | -2.167702 | ubenimex | VCAP |\n", "| verrucarin-a__NEU__trt_cp | HOXC5 | -2.535550 | verrucarin-a | NEU |\n", "| verteporfin__VCAP__trt_cp | VENTX | -2.372383 | verteporfin | VCAP |\n", "| vinblastine__PHH__trt_cp | ISL1 | -2.215100 | vinblastine | PHH |\n", "| WYE-125132__MCF7__trt_cp | HOXC5 | -2.019033 | WYE-125132 | MCF7 |\n", "| WYE-354__ASC__trt_cp | HOXC5 | -2.030976 | WYE-354 | ASC |\n", "| WZ-3105__NPC__trt_cp | ISL1 | -2.444200 | WZ-3105 | NPC |\n", "| YM-155__NPC__trt_cp | ISL1 | -2.259500 | YM-155 | NPC |\n", "| zoxazolamine__PHH__trt_cp | VENTX | -2.148100 | zoxazolamine | PHH |\n", "\n" ], "text/plain": [ " Drug TF ZSCORE Drug.name \n", "1 alpha-tocopherol__MCF7__trt_cp ISL1 -2.502400 alpha-tocopherol \n", "2 alpha-tocopherol__PC3__trt_cp ISL1 -2.310900 alpha-tocopherol \n", "3 anisomycin__NEU__trt_cp HOXC5 -2.530992 anisomycin \n", "4 anisomycin__ASC__trt_cp ISL1 -2.111786 anisomycin \n", "5 apicidin__HEPG2__trt_cp HOXC5 -2.335700 apicidin \n", "6 apicidin__A375__trt_cp ISL1 -2.681550 apicidin \n", "7 BG-1003__NEU__trt_cp ISL1 -2.279669 BG-1003 \n", "8 BG-1003__NPC__trt_cp ISL1 -2.050464 BG-1003 \n", "9 BG-1025__NEU__trt_cp ISL1 -2.330200 BG-1025 \n", "10 BG-1025__NPC__trt_cp ISL1 -2.107575 BG-1025 \n", "11 BML-257__NEU__trt_cp ISL1 -5.686600 BML-257 \n", "12 BML-257__NEU__trt_cp VENTX -3.350300 BML-257 \n", "13 BMY-14802__NPC__trt_cp ISL1 -2.252357 BMY-14802 \n", "14 BMY-14802__PHH__trt_cp ISL1 -2.118578 BMY-14802 \n", "15 BRD-A68274214__NEU__trt_cp ISL1 -2.049750 BRD-A68274214 \n", "16 BRD-A68274214__VCAP__trt_cp VENTX -2.685372 BRD-A68274214 \n", "17 BRD-K02223034__A549__trt_cp ISL1 -2.238800 BRD-K02223034 \n", "18 BRD-K02223034__SKB__trt_cp ISL1 -2.220776 BRD-K02223034 \n", "19 BRD-K25731886__A549__trt_cp ISL1 -4.073600 BRD-K25731886 \n", "20 BRD-K25731886__NEU__trt_cp ISL1 -2.935900 BRD-K25731886 \n", "21 BRD-K44893543__NEU__trt_cp HOXC5 -2.403568 BRD-K44893543 \n", "22 BRD-K44893543__NEU__trt_cp VENTX -2.608974 BRD-K44893543 \n", "23 BRD-K66884694__MCF7__trt_cp ISL1 -2.475050 BRD-K66884694 \n", "24 BRD-K66884694__VCAP__trt_cp ISL1 -2.011937 BRD-K66884694 \n", "25 BRD-K98731749__NEU__trt_cp ISL1 -3.041465 BRD-K98731749 \n", "26 BRD-K98731749__VCAP__trt_cp VENTX -2.255098 BRD-K98731749 \n", "27 butoconazole__PHH__trt_cp ISL1 -2.217050 butoconazole \n", "28 butoconazole__HCC515__trt_cp VENTX -2.043097 butoconazole \n", "29 cucurbitacin-i__MCF7__trt_cp HOXC5 -2.504937 cucurbitacin-i \n", "30 cucurbitacin-i__MCF7__trt_cp ISL1 -2.131572 cucurbitacin-i \n", "⋮ ⋮ ⋮ ⋮ ⋮ \n", "297 SEW-05685__VCAP__trt_cp VENTX -2.412868 SEW-05685 \n", "298 SJ-172550__VCAP__trt_cp VENTX -2.893954 SJ-172550 \n", "299 sorafenib__VCAP__trt_cp HOXC5 -2.387828 sorafenib \n", "300 SQ-22536__NPC__trt_cp HOXC5 -2.024650 SQ-22536 \n", "301 SR-12813__NEU__trt_cp ISL1 -2.061450 SR-12813 \n", "302 ST-4029010__NEU__trt_cp HOXC5 -2.160550 ST-4029010 \n", "303 ST-638__HA1E__trt_cp ISL1 -2.139165 ST-638 \n", "304 staurosporine__A375__trt_cp ISL1 -3.507200 staurosporine \n", "305 STK-397047__NEU__trt_cp ISL1 -2.067650 STK-397047 \n", "306 STOCK1S-03920__MCF7__trt_cp ISL1 -2.238906 STOCK1S-03920 \n", "307 temozolomide__NEU__trt_cp ISL1 -2.358148 temozolomide \n", "308 teniposide__NPC__trt_cp ISL1 -2.629349 teniposide \n", "309 tert-butylhydroquinone__MCF7__trt_cp ISL1 -3.080953 tert-butylhydroquinone\n", "310 toremifene__MCF7__trt_cp HOXC5 -2.111762 toremifene \n", "311 torin-2__PHH__trt_cp ISL1 -2.098830 torin-2 \n", "312 tranilast__PHH__trt_cp ISL1 -3.020363 tranilast \n", "313 treprostinil__PHH__trt_cp VENTX -2.756694 treprostinil \n", "314 tributyltin__HA1E__trt_cp ISL1 -3.094550 tributyltin \n", "315 triphenyl-tin__HA1E__trt_cp ISL1 -2.005953 triphenyl-tin \n", "316 tubacin__VCAP__trt_cp VENTX -3.499640 tubacin \n", "317 tyrphostin-AG-825__MCF7__trt_cp VENTX -2.394913 tyrphostin-AG-825 \n", "318 ubenimex__VCAP__trt_cp ISL1 -2.167702 ubenimex \n", "319 verrucarin-a__NEU__trt_cp HOXC5 -2.535550 verrucarin-a \n", "320 verteporfin__VCAP__trt_cp VENTX -2.372383 verteporfin \n", "321 vinblastine__PHH__trt_cp ISL1 -2.215100 vinblastine \n", "322 WYE-125132__MCF7__trt_cp HOXC5 -2.019033 WYE-125132 \n", "323 WYE-354__ASC__trt_cp HOXC5 -2.030976 WYE-354 \n", "324 WZ-3105__NPC__trt_cp ISL1 -2.444200 WZ-3105 \n", "325 YM-155__NPC__trt_cp ISL1 -2.259500 YM-155 \n", "326 zoxazolamine__PHH__trt_cp VENTX -2.148100 zoxazolamine \n", " cellLine\n", "1 MCF7 \n", "2 PC3 \n", "3 NEU \n", "4 ASC \n", "5 HEPG2 \n", "6 A375 \n", "7 NEU \n", "8 NPC \n", "9 NEU \n", "10 NPC \n", "11 NEU \n", "12 NEU \n", "13 NPC \n", "14 PHH \n", "15 NEU \n", "16 VCAP \n", "17 A549 \n", "18 SKB \n", "19 A549 \n", "20 NEU \n", "21 NEU \n", "22 NEU \n", "23 MCF7 \n", "24 VCAP \n", "25 NEU \n", "26 VCAP \n", "27 PHH \n", "28 HCC515 \n", "29 MCF7 \n", "30 MCF7 \n", "⋮ ⋮ \n", "297 VCAP \n", "298 VCAP \n", "299 VCAP \n", "300 NPC \n", "301 NEU \n", "302 NEU \n", "303 HA1E \n", "304 A375 \n", "305 NEU \n", "306 MCF7 \n", "307 NEU \n", "308 NPC \n", "309 MCF7 \n", "310 MCF7 \n", "311 PHH \n", "312 PHH \n", "313 PHH \n", "314 HA1E \n", "315 HA1E \n", "316 VCAP \n", "317 MCF7 \n", "318 VCAP \n", "319 NEU \n", "320 VCAP \n", "321 PHH \n", "322 MCF7 \n", "323 ASC \n", "324 NPC \n", "325 NPC \n", "326 PHH " ] }, "metadata": {}, "output_type": "display_data" } ], "source": [ "####output \n", "library (plyr)\n", "drug.result <- ldply (drug.lists, data.frame)\n", "drug.result <- drug.result[,c(2,1,3)]\n", "colnames(drug.result) <- c(\"Drug\", \"TF\", \"ZSCORE\")\n", "library(writexl)\n", "drug.result$Drug.name <- gsub(\"__.*\", \"\", drug.result$Drug)\n", "drug.result$cellLine <- gsub(\"__trt_cp\", \"\", drug.result$Drug)\n", "drug.result$cellLine <- gsub(\".*__\", \"\", drug.result$cellLine)\n", "drug.idx <- sort(table(drug.result$Drug.name),decreasing = T)\n", "drug.result$Drug.name <- factor(drug.result$Drug.name, levels = names(drug.idx))\n", "drug.result <- arrange(drug.result, Drug.name, TF, Drug)\n", "write_xlsx(drug.result, \"/data/active_data/lzl/RenalTumor-20200713/DataAnalysis-20210803/Drug/LINCS/lincs.TF.negative.drug.result.xlsx\")\n", "drug.result" ] }, { "cell_type": "markdown", "id": "d84ea99d-1cdd-492b-a2c7-8f7f86f2ac1b", "metadata": {}, "source": [ "##### 查看Lincs中的药物信息和细胞系信息" ] }, { "cell_type": "code", "execution_count": 35, "id": "a23c2274-8430-4715-9f07-385ba9e74767", "metadata": { "execution": { "iopub.execute_input": "2021-09-23T06:22:38.342470Z", "iopub.status.busy": "2021-09-23T06:22:38.338912Z", "iopub.status.idle": "2021-09-23T06:22:50.668557Z", "shell.execute_reply": "2021-09-23T06:22:50.667164Z" }, "tags": [], "vscode": { "languageId": "r" } }, "outputs": [ { "data": { "text/html": [ "\n", "\n", "\n", "\t\n", "\t\n", "\n", "\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\n", "
A data.frame: 6 × 35
bead_batchnearest_dosepert_dosepert_dose_unitpert_idosepert_itimepert_timepert_time_unitcell_mfc_namepert_mfc_idsig_idpert_typecell_inamedet_wellsdet_platesdistil_idsbuild_nameproject_codecmap_nameis_ncs_exemplar
<chr><dbl><dbl><chr><chr><chr><dbl><chr><chr><chr><chr><chr><chr><chr><chr><chr><lgl><chr><chr><int>
1b17 NA100.0ug/ml100 ug/ml336 h336hN8 BRD-U44432129MET001_N8_XH:BRD-U44432129:100:336 trt_cpNAMEC8H05|H06|H07|H08MET001_N8_XH_X1_B17 MET001_N8_XH_X1_B17:H05|MET001_N8_XH_X1_B17:H06|MET001_N8_XH_X1_B17:H07|MET001_N8_XH_X1_B17:H08NAMETBRD-U444321290
2b1510.0 10.0uM 10 uM 3 h 3hA549 BRD-K81418486ABY001_A549_XH:BRD-K81418486:10:3 trt_cpA549 L04|L08|L12 ABY001_A549_XH_X1_B15 ABY001_A549_XH_X1_B15:L04|ABY001_A549_XH_X1_B15:L08|ABY001_A549_XH_X1_B15:L12 NAABYvorinostat 0
3b15 2.5 2.5uM 2.5 uM 24 h 24hHT29 BRD-K70511574ABY001_HT29_XH:BRD-K70511574:2.5:24trt_cpHT29 E18|E22 ABY001_HT29_XH_X1_B15 ABY001_HT29_XH_X1_B15:E18|ABY001_HT29_XH_X1_B15:E22 NAABYHMN-214 0
4b1810.0 10.0uM 10 uM 3 h 3hHME1 BRD-K81418486LTC002_HME1_3H:BRD-K81418486:10 trt_cpHME1 F19 LTC002_HME1_3H_X1_B18 LTC002_HME1_3H_X1_B18:F19 NALTCvorinostat 0
5b1510.0 10.0uM 10 uM 3 h 3hH1975BRD-A61304759ABY001_H1975_XH:BRD-A61304759:10:3 trt_cpH1975 P01|P05|P09 ABY001_H1975_XH_X1_B15ABY001_H1975_XH_X1_B15:P01|ABY001_H1975_XH_X1_B15:P05|ABY001_H1975_XH_X1_B15:P09 NAABYtanespimycin 0
6b1510.0 10.0uM 10 uM 24 h 24hH1975BRD-K85606544ABY001_H1975_XH:BRD-K85606544:10:24trt_cpH1975 A15|A19|A23 ABY001_H1975_XH_X1_B15ABY001_H1975_XH_X1_B15:A15|ABY001_H1975_XH_X1_B15:A19|ABY001_H1975_XH_X1_B15:A23 NAABYneratinib 0
\n" ], "text/latex": [ "A data.frame: 6 × 35\n", "\\begin{tabular}{r|lllllllllllllllllllll}\n", " & bead\\_batch & nearest\\_dose & pert\\_dose & pert\\_dose\\_unit & pert\\_idose & pert\\_itime & pert\\_time & pert\\_time\\_unit & cell\\_mfc\\_name & pert\\_mfc\\_id & ⋯ & sig\\_id & pert\\_type & cell\\_iname & det\\_wells & det\\_plates & distil\\_ids & build\\_name & project\\_code & cmap\\_name & is\\_ncs\\_exemplar\\\\\n", " & & & & & & & & & & & ⋯ & & & & & & & & & & \\\\\n", "\\hline\n", "\t1 & b17 & NA & 100.0 & ug/ml & 100 ug/ml & 336 h & 336 & h & N8 & BRD-U44432129 & ⋯ & MET001\\_N8\\_XH:BRD-U44432129:100:336 & trt\\_cp & NAMEC8 & H05\\textbar{}H06\\textbar{}H07\\textbar{}H08 & MET001\\_N8\\_XH\\_X1\\_B17 & MET001\\_N8\\_XH\\_X1\\_B17:H05\\textbar{}MET001\\_N8\\_XH\\_X1\\_B17:H06\\textbar{}MET001\\_N8\\_XH\\_X1\\_B17:H07\\textbar{}MET001\\_N8\\_XH\\_X1\\_B17:H08 & NA & MET & BRD-U44432129 & 0\\\\\n", "\t2 & b15 & 10.0 & 10.0 & uM & 10 uM & 3 h & 3 & h & A549 & BRD-K81418486 & ⋯ & ABY001\\_A549\\_XH:BRD-K81418486:10:3 & trt\\_cp & A549 & L04\\textbar{}L08\\textbar{}L12 & ABY001\\_A549\\_XH\\_X1\\_B15 & ABY001\\_A549\\_XH\\_X1\\_B15:L04\\textbar{}ABY001\\_A549\\_XH\\_X1\\_B15:L08\\textbar{}ABY001\\_A549\\_XH\\_X1\\_B15:L12 & NA & ABY & vorinostat & 0\\\\\n", "\t3 & b15 & 2.5 & 2.5 & uM & 2.5 uM & 24 h & 24 & h & HT29 & BRD-K70511574 & ⋯ & ABY001\\_HT29\\_XH:BRD-K70511574:2.5:24 & trt\\_cp & HT29 & E18\\textbar{}E22 & ABY001\\_HT29\\_XH\\_X1\\_B15 & ABY001\\_HT29\\_XH\\_X1\\_B15:E18\\textbar{}ABY001\\_HT29\\_XH\\_X1\\_B15:E22 & NA & ABY & HMN-214 & 0\\\\\n", "\t4 & b18 & 10.0 & 10.0 & uM & 10 uM & 3 h & 3 & h & HME1 & BRD-K81418486 & ⋯ & LTC002\\_HME1\\_3H:BRD-K81418486:10 & trt\\_cp & HME1 & F19 & LTC002\\_HME1\\_3H\\_X1\\_B18 & LTC002\\_HME1\\_3H\\_X1\\_B18:F19 & NA & LTC & vorinostat & 0\\\\\n", "\t5 & b15 & 10.0 & 10.0 & uM & 10 uM & 3 h & 3 & h & H1975 & BRD-A61304759 & ⋯ & ABY001\\_H1975\\_XH:BRD-A61304759:10:3 & trt\\_cp & H1975 & P01\\textbar{}P05\\textbar{}P09 & ABY001\\_H1975\\_XH\\_X1\\_B15 & ABY001\\_H1975\\_XH\\_X1\\_B15:P01\\textbar{}ABY001\\_H1975\\_XH\\_X1\\_B15:P05\\textbar{}ABY001\\_H1975\\_XH\\_X1\\_B15:P09 & NA & ABY & tanespimycin & 0\\\\\n", "\t6 & b15 & 10.0 & 10.0 & uM & 10 uM & 24 h & 24 & h & H1975 & BRD-K85606544 & ⋯ & ABY001\\_H1975\\_XH:BRD-K85606544:10:24 & trt\\_cp & H1975 & A15\\textbar{}A19\\textbar{}A23 & ABY001\\_H1975\\_XH\\_X1\\_B15 & ABY001\\_H1975\\_XH\\_X1\\_B15:A15\\textbar{}ABY001\\_H1975\\_XH\\_X1\\_B15:A19\\textbar{}ABY001\\_H1975\\_XH\\_X1\\_B15:A23 & NA & ABY & neratinib & 0\\\\\n", "\\end{tabular}\n" ], "text/markdown": [ "\n", "A data.frame: 6 × 35\n", "\n", "| | bead_batch <chr> | nearest_dose <dbl> | pert_dose <dbl> | pert_dose_unit <chr> | pert_idose <chr> | pert_itime <chr> | pert_time <dbl> | pert_time_unit <chr> | cell_mfc_name <chr> | pert_mfc_id <chr> | ⋯ ⋯ | sig_id <chr> | pert_type <chr> | cell_iname <chr> | det_wells <chr> | det_plates <chr> | distil_ids <chr> | build_name <lgl> | project_code <chr> | cmap_name <chr> | is_ncs_exemplar <int> |\n", "|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|\n", "| 1 | b17 | NA | 100.0 | ug/ml | 100 ug/ml | 336 h | 336 | h | N8 | BRD-U44432129 | ⋯ | MET001_N8_XH:BRD-U44432129:100:336 | trt_cp | NAMEC8 | H05|H06|H07|H08 | MET001_N8_XH_X1_B17 | MET001_N8_XH_X1_B17:H05|MET001_N8_XH_X1_B17:H06|MET001_N8_XH_X1_B17:H07|MET001_N8_XH_X1_B17:H08 | NA | MET | BRD-U44432129 | 0 |\n", "| 2 | b15 | 10.0 | 10.0 | uM | 10 uM | 3 h | 3 | h | A549 | BRD-K81418486 | ⋯ | ABY001_A549_XH:BRD-K81418486:10:3 | trt_cp | A549 | L04|L08|L12 | ABY001_A549_XH_X1_B15 | ABY001_A549_XH_X1_B15:L04|ABY001_A549_XH_X1_B15:L08|ABY001_A549_XH_X1_B15:L12 | NA | ABY | vorinostat | 0 |\n", "| 3 | b15 | 2.5 | 2.5 | uM | 2.5 uM | 24 h | 24 | h | HT29 | BRD-K70511574 | ⋯ | ABY001_HT29_XH:BRD-K70511574:2.5:24 | trt_cp | HT29 | E18|E22 | ABY001_HT29_XH_X1_B15 | ABY001_HT29_XH_X1_B15:E18|ABY001_HT29_XH_X1_B15:E22 | NA | ABY | HMN-214 | 0 |\n", "| 4 | b18 | 10.0 | 10.0 | uM | 10 uM | 3 h | 3 | h | HME1 | BRD-K81418486 | ⋯ | LTC002_HME1_3H:BRD-K81418486:10 | trt_cp | HME1 | F19 | LTC002_HME1_3H_X1_B18 | LTC002_HME1_3H_X1_B18:F19 | NA | LTC | vorinostat | 0 |\n", "| 5 | b15 | 10.0 | 10.0 | uM | 10 uM | 3 h | 3 | h | H1975 | BRD-A61304759 | ⋯ | ABY001_H1975_XH:BRD-A61304759:10:3 | trt_cp | H1975 | P01|P05|P09 | ABY001_H1975_XH_X1_B15 | ABY001_H1975_XH_X1_B15:P01|ABY001_H1975_XH_X1_B15:P05|ABY001_H1975_XH_X1_B15:P09 | NA | ABY | tanespimycin | 0 |\n", "| 6 | b15 | 10.0 | 10.0 | uM | 10 uM | 24 h | 24 | h | H1975 | BRD-K85606544 | ⋯ | ABY001_H1975_XH:BRD-K85606544:10:24 | trt_cp | H1975 | A15|A19|A23 | ABY001_H1975_XH_X1_B15 | ABY001_H1975_XH_X1_B15:A15|ABY001_H1975_XH_X1_B15:A19|ABY001_H1975_XH_X1_B15:A23 | NA | ABY | neratinib | 0 |\n", "\n" ], "text/plain": [ " bead_batch nearest_dose pert_dose pert_dose_unit pert_idose pert_itime\n", "1 b17 NA 100.0 ug/ml 100 ug/ml 336 h \n", "2 b15 10.0 10.0 uM 10 uM 3 h \n", "3 b15 2.5 2.5 uM 2.5 uM 24 h \n", "4 b18 10.0 10.0 uM 10 uM 3 h \n", "5 b15 10.0 10.0 uM 10 uM 3 h \n", "6 b15 10.0 10.0 uM 10 uM 24 h \n", " pert_time pert_time_unit cell_mfc_name pert_mfc_id ⋯\n", "1 336 h N8 BRD-U44432129 ⋯\n", "2 3 h A549 BRD-K81418486 ⋯\n", "3 24 h HT29 BRD-K70511574 ⋯\n", "4 3 h HME1 BRD-K81418486 ⋯\n", "5 3 h H1975 BRD-A61304759 ⋯\n", "6 24 h H1975 BRD-K85606544 ⋯\n", " sig_id pert_type cell_iname det_wells \n", "1 MET001_N8_XH:BRD-U44432129:100:336 trt_cp NAMEC8 H05|H06|H07|H08\n", "2 ABY001_A549_XH:BRD-K81418486:10:3 trt_cp A549 L04|L08|L12 \n", "3 ABY001_HT29_XH:BRD-K70511574:2.5:24 trt_cp HT29 E18|E22 \n", "4 LTC002_HME1_3H:BRD-K81418486:10 trt_cp HME1 F19 \n", "5 ABY001_H1975_XH:BRD-A61304759:10:3 trt_cp H1975 P01|P05|P09 \n", "6 ABY001_H1975_XH:BRD-K85606544:10:24 trt_cp H1975 A15|A19|A23 \n", " det_plates \n", "1 MET001_N8_XH_X1_B17 \n", "2 ABY001_A549_XH_X1_B15 \n", "3 ABY001_HT29_XH_X1_B15 \n", "4 LTC002_HME1_3H_X1_B18 \n", "5 ABY001_H1975_XH_X1_B15\n", "6 ABY001_H1975_XH_X1_B15\n", " distil_ids \n", "1 MET001_N8_XH_X1_B17:H05|MET001_N8_XH_X1_B17:H06|MET001_N8_XH_X1_B17:H07|MET001_N8_XH_X1_B17:H08\n", "2 ABY001_A549_XH_X1_B15:L04|ABY001_A549_XH_X1_B15:L08|ABY001_A549_XH_X1_B15:L12 \n", "3 ABY001_HT29_XH_X1_B15:E18|ABY001_HT29_XH_X1_B15:E22 \n", "4 LTC002_HME1_3H_X1_B18:F19 \n", "5 ABY001_H1975_XH_X1_B15:P01|ABY001_H1975_XH_X1_B15:P05|ABY001_H1975_XH_X1_B15:P09 \n", "6 ABY001_H1975_XH_X1_B15:A15|ABY001_H1975_XH_X1_B15:A19|ABY001_H1975_XH_X1_B15:A23 \n", " build_name project_code cmap_name is_ncs_exemplar\n", "1 NA MET BRD-U44432129 0 \n", "2 NA ABY vorinostat 0 \n", "3 NA ABY HMN-214 0 \n", "4 NA LTC vorinostat 0 \n", "5 NA ABY tanespimycin 0 \n", "6 NA ABY neratinib 0 " ] }, "metadata": {}, "output_type": "display_data" } ], "source": [ "####drug information\n", "siginfo_beta <- read.table(file = \"siginfo_beta.txt\", header = T, stringsAsFactors = F, sep = \"\\t\")\n", "head(siginfo_beta)" ] }, { "cell_type": "code", "execution_count": 36, "id": "32fd238a-fb78-4b15-bdfa-e401de3ff7eb", "metadata": { "execution": { "iopub.execute_input": "2021-09-23T06:22:55.046444Z", "iopub.status.busy": "2021-09-23T06:22:55.041761Z", "iopub.status.idle": "2021-09-23T06:22:55.068934Z", "shell.execute_reply": "2021-09-23T06:22:55.067514Z" }, "tags": [], "vscode": { "languageId": "r" } }, "outputs": [ { "data": { "text/html": [ "\n", "
  1. '1HAE'
  2. 'AALE'
  3. 'AG06263_2'
  4. 'AG06840_A'
  5. 'AG078N1_1'
  6. 'C42'
  7. 'CD34'
  8. 'HAP1'
  9. 'HEK293T'
  10. 'HIMG001'
  11. 'HIMG002'
  12. 'HME'
  13. 'HMELZ'
  14. 'HPTEC'
  15. 'HS27A'
  16. 'HUES3'
  17. 'HUH751'
  18. 'HUVEC'
  19. 'IPS-15-2'
  20. 'IPS-3'
  21. 'IPS-ND34732'
  22. 'LHSAR'
  23. 'MCH58'
  24. 'MCLF0067SZ'
  25. 'MCLF015CN'
  26. 'MCLF022CN'
  27. 'MCLF027CN'
  28. 'MCLF033SZ'
  29. 'MCLF035SZ'
  30. 'MCLF037SZ'
  31. 'MCLF040SZ'
  32. 'MCLF051CN'
  33. 'MCLF054CN'
  34. 'MCLF056CN'
  35. 'MCLF076SZ'
  36. 'MCLF100SZ'
  37. 'MCLF117SZ'
  38. 'MCLF123SZ'
  39. 'MCLF126CN'
  40. 'MCLF130CN'
  41. 'MCLF135CN'
  42. 'MCLF137CN'
  43. 'MCLF141SZ'
  44. 'MCLF162SZ'
  45. 'MICROGLIA-PSEN1'
  46. 'MNEU'
  47. 'NAMEC8'
  48. 'ND34732_7'
  49. 'NKDBA'
  50. 'P1A82'
  51. 'P2X2B2'
  52. 'SKB'
  53. 'WA09'
  54. 'XC.500'
  55. 'XC.L10'
  56. 'XC.L100'
  57. 'XC.P026'
  58. 'XC.P031'
  59. 'XC.P033'
  60. 'XC.P091'
  61. 'XC.P092'
  62. 'XC.P901'
  63. 'XC.P904'
  64. 'XC.P905'
  65. 'XC.P906'
  66. 'XC.P907'
  67. 'XC.P908'
  68. 'XC.P909'
  69. 'XC.P910'
  70. 'XC.P911'
  71. 'XC.P912'
  72. 'XC.P914'
  73. 'XC.P915'
  74. 'XC.P922'
  75. 'XC.P930'
  76. 'XC.P931'
  77. 'XC.P932'
  78. 'XC.P933'
  79. 'XC.P934'
  80. 'XC.P935'
  81. 'XC.P936'
  82. 'XC.R10'
  83. 'HME1'
  84. 'BJAB'
  85. 'HBL1'
  86. 'OCILY10'
  87. 'TMD8'
  88. 'TC32'
  89. 'H1299'
  90. 'H1975'
  91. 'HCC515'
  92. 'SALE'
  93. 'SHSY5Y'
  94. '22RV1'
  95. 'HEC1A'
  96. 'NL20'
  97. 'PHH'
  98. 'HA1E'
  99. 'HEK293'
  100. 'HEKTE'
  101. 'NEU'
  102. 'NPC'
  103. 'ASC'
  104. 'U266B1'
  105. 'HL60'
  106. 'K562'
  107. 'TF1'
  108. 'THP1'
  109. 'MINO'
  110. 'U937'
  111. 'A673'
  112. 'SKES1'
  113. 'U2OS'
  114. 'A549'
  115. 'HCC827'
  116. 'NCIH1437'
  117. 'NCIH1563'
  118. 'NCIH1573'
  119. 'NCIH1694'
  120. 'NCIH1781'
  121. 'NCIH1836'
  122. 'NCIH1975'
  123. 'NCIH2073'
  124. 'NCIH2110'
  125. 'NCIH2172'
  126. 'NCIH596'
  127. 'NCIH838'
  128. 'NCIH841'
  129. 'SKLU1'
  130. 'A375'
  131. 'SH4'
  132. 'SKMEL1'
  133. 'SKMEL28'
  134. 'SKMEL3'
  135. 'SKMEL5'
  136. 'LN229'
  137. 'DLD1'
  138. 'HCT116'
  139. 'HT29'
  140. 'LOVO'
  141. 'NCIH508'
  142. 'NCIH716'
  143. 'RKO'
  144. 'SW480'
  145. 'SW620'
  146. 'SW948'
  147. 'HEPG2'
  148. 'BT20'
  149. 'BT474'
  150. 'HS578T'
  151. 'MCF10A'
  152. 'MCF7'
  153. 'MDAMB231'
  154. 'MDAMB468'
  155. 'SKBR3'
  156. 'T47D'
  157. 'ZR751'
  158. 'G401'
  159. 'SKNSH'
  160. '5637'
  161. 'J82'
  162. 'AGS'
  163. 'ES2'
  164. 'HELA'
  165. 'DU145'
  166. 'PC3'
  167. 'RWPE1'
  168. 'VCAP'
  169. 'A204'
  170. 'AN3CA'
  171. 'TOV112D'
  172. 'WI38'
  173. 'JURKAT'
  174. 'NALM6'
  175. 'PL21'
  176. 'OCILY19'
  177. 'SUDHL4'
  178. 'WSUDLCL2'
  179. 'BEN'
  180. 'DV90'
  181. 'HCC15'
  182. 'HCC44'
  183. 'IGR37'
  184. 'MELHO'
  185. 'CL34'
  186. 'BC3C'
  187. 'CAL29'
  188. 'VMCUB1'
  189. 'EFO27'
  190. 'LNCAP'
  191. 'YAPC'
  192. 'MFE319'
  193. 'OC314'
  194. 'OC316'
  195. 'HFL1'
  196. 'IMR90'
  197. 'HCC1588'
  198. 'HCC95'
  199. 'SNU1040'
  200. 'SNU407'
  201. 'SNUC4'
  202. 'SNUC5'
  203. 'CORL23'
  204. 'GP2D'
  205. 'HT115'
  206. 'MDST8'
  207. 'COV434'
  208. 'COV644'
  209. 'OAW28'
  210. 'OV7'
  211. 'BICR6'
  212. 'KMS34'
  213. 'NOMO1'
  214. 'SKM1'
  215. 'U251MG'
  216. 'YH13'
  217. 'HUH7'
  218. 'JHH5'
  219. 'JHH7'
  220. 'IM95'
  221. 'MKN45'
  222. 'OVTOKO'
  223. 'RMGI'
  224. 'RMUGS'
  225. 'TYKNU'
  226. 'HEC108'
  227. 'HEC151'
  228. 'HEC251'
  229. 'HEC265'
  230. 'SNGM'
  231. 'SKL'
  232. 'T3M10'
  233. 'CJM'
  234. 'GI1'
  235. 'CW2'
  236. 'RCC10RGB'
  237. 'OVK18'
  238. 'JHUEM2'
  239. 'OVCAR8'
  240. 'OCILY3'
\n" ], "text/latex": [ "\\begin{enumerate*}\n", "\\item '1HAE'\n", "\\item 'AALE'\n", "\\item 'AG06263\\_2'\n", "\\item 'AG06840\\_A'\n", "\\item 'AG078N1\\_1'\n", "\\item 'C42'\n", "\\item 'CD34'\n", "\\item 'HAP1'\n", "\\item 'HEK293T'\n", "\\item 'HIMG001'\n", "\\item 'HIMG002'\n", "\\item 'HME'\n", "\\item 'HMELZ'\n", "\\item 'HPTEC'\n", "\\item 'HS27A'\n", "\\item 'HUES3'\n", "\\item 'HUH751'\n", "\\item 'HUVEC'\n", "\\item 'IPS-15-2'\n", "\\item 'IPS-3'\n", "\\item 'IPS-ND34732'\n", "\\item 'LHSAR'\n", "\\item 'MCH58'\n", "\\item 'MCLF0067SZ'\n", "\\item 'MCLF015CN'\n", "\\item 'MCLF022CN'\n", "\\item 'MCLF027CN'\n", "\\item 'MCLF033SZ'\n", "\\item 'MCLF035SZ'\n", "\\item 'MCLF037SZ'\n", "\\item 'MCLF040SZ'\n", "\\item 'MCLF051CN'\n", "\\item 'MCLF054CN'\n", "\\item 'MCLF056CN'\n", "\\item 'MCLF076SZ'\n", "\\item 'MCLF100SZ'\n", "\\item 'MCLF117SZ'\n", "\\item 'MCLF123SZ'\n", "\\item 'MCLF126CN'\n", "\\item 'MCLF130CN'\n", "\\item 'MCLF135CN'\n", "\\item 'MCLF137CN'\n", "\\item 'MCLF141SZ'\n", "\\item 'MCLF162SZ'\n", "\\item 'MICROGLIA-PSEN1'\n", "\\item 'MNEU'\n", "\\item 'NAMEC8'\n", "\\item 'ND34732\\_7'\n", "\\item 'NKDBA'\n", "\\item 'P1A82'\n", "\\item 'P2X2B2'\n", "\\item 'SKB'\n", "\\item 'WA09'\n", "\\item 'XC.500'\n", "\\item 'XC.L10'\n", "\\item 'XC.L100'\n", "\\item 'XC.P026'\n", "\\item 'XC.P031'\n", "\\item 'XC.P033'\n", "\\item 'XC.P091'\n", "\\item 'XC.P092'\n", "\\item 'XC.P901'\n", "\\item 'XC.P904'\n", "\\item 'XC.P905'\n", "\\item 'XC.P906'\n", "\\item 'XC.P907'\n", "\\item 'XC.P908'\n", "\\item 'XC.P909'\n", "\\item 'XC.P910'\n", "\\item 'XC.P911'\n", "\\item 'XC.P912'\n", "\\item 'XC.P914'\n", "\\item 'XC.P915'\n", "\\item 'XC.P922'\n", "\\item 'XC.P930'\n", "\\item 'XC.P931'\n", "\\item 'XC.P932'\n", "\\item 'XC.P933'\n", "\\item 'XC.P934'\n", "\\item 'XC.P935'\n", "\\item 'XC.P936'\n", "\\item 'XC.R10'\n", "\\item 'HME1'\n", "\\item 'BJAB'\n", "\\item 'HBL1'\n", "\\item 'OCILY10'\n", "\\item 'TMD8'\n", "\\item 'TC32'\n", "\\item 'H1299'\n", "\\item 'H1975'\n", "\\item 'HCC515'\n", "\\item 'SALE'\n", "\\item 'SHSY5Y'\n", "\\item '22RV1'\n", "\\item 'HEC1A'\n", "\\item 'NL20'\n", "\\item 'PHH'\n", "\\item 'HA1E'\n", "\\item 'HEK293'\n", "\\item 'HEKTE'\n", "\\item 'NEU'\n", "\\item 'NPC'\n", "\\item 'ASC'\n", "\\item 'U266B1'\n", "\\item 'HL60'\n", "\\item 'K562'\n", "\\item 'TF1'\n", "\\item 'THP1'\n", "\\item 'MINO'\n", "\\item 'U937'\n", "\\item 'A673'\n", "\\item 'SKES1'\n", "\\item 'U2OS'\n", "\\item 'A549'\n", "\\item 'HCC827'\n", "\\item 'NCIH1437'\n", "\\item 'NCIH1563'\n", "\\item 'NCIH1573'\n", "\\item 'NCIH1694'\n", "\\item 'NCIH1781'\n", "\\item 'NCIH1836'\n", "\\item 'NCIH1975'\n", "\\item 'NCIH2073'\n", "\\item 'NCIH2110'\n", "\\item 'NCIH2172'\n", "\\item 'NCIH596'\n", "\\item 'NCIH838'\n", "\\item 'NCIH841'\n", "\\item 'SKLU1'\n", "\\item 'A375'\n", "\\item 'SH4'\n", "\\item 'SKMEL1'\n", "\\item 'SKMEL28'\n", "\\item 'SKMEL3'\n", "\\item 'SKMEL5'\n", "\\item 'LN229'\n", "\\item 'DLD1'\n", "\\item 'HCT116'\n", "\\item 'HT29'\n", "\\item 'LOVO'\n", "\\item 'NCIH508'\n", "\\item 'NCIH716'\n", "\\item 'RKO'\n", "\\item 'SW480'\n", "\\item 'SW620'\n", "\\item 'SW948'\n", "\\item 'HEPG2'\n", "\\item 'BT20'\n", "\\item 'BT474'\n", "\\item 'HS578T'\n", "\\item 'MCF10A'\n", "\\item 'MCF7'\n", "\\item 'MDAMB231'\n", "\\item 'MDAMB468'\n", "\\item 'SKBR3'\n", "\\item 'T47D'\n", "\\item 'ZR751'\n", "\\item 'G401'\n", "\\item 'SKNSH'\n", "\\item '5637'\n", "\\item 'J82'\n", "\\item 'AGS'\n", "\\item 'ES2'\n", "\\item 'HELA'\n", "\\item 'DU145'\n", "\\item 'PC3'\n", "\\item 'RWPE1'\n", "\\item 'VCAP'\n", "\\item 'A204'\n", "\\item 'AN3CA'\n", "\\item 'TOV112D'\n", "\\item 'WI38'\n", "\\item 'JURKAT'\n", "\\item 'NALM6'\n", "\\item 'PL21'\n", "\\item 'OCILY19'\n", "\\item 'SUDHL4'\n", "\\item 'WSUDLCL2'\n", "\\item 'BEN'\n", "\\item 'DV90'\n", "\\item 'HCC15'\n", "\\item 'HCC44'\n", "\\item 'IGR37'\n", "\\item 'MELHO'\n", "\\item 'CL34'\n", "\\item 'BC3C'\n", "\\item 'CAL29'\n", "\\item 'VMCUB1'\n", "\\item 'EFO27'\n", "\\item 'LNCAP'\n", "\\item 'YAPC'\n", "\\item 'MFE319'\n", "\\item 'OC314'\n", "\\item 'OC316'\n", "\\item 'HFL1'\n", "\\item 'IMR90'\n", "\\item 'HCC1588'\n", "\\item 'HCC95'\n", "\\item 'SNU1040'\n", "\\item 'SNU407'\n", "\\item 'SNUC4'\n", "\\item 'SNUC5'\n", "\\item 'CORL23'\n", "\\item 'GP2D'\n", "\\item 'HT115'\n", "\\item 'MDST8'\n", "\\item 'COV434'\n", "\\item 'COV644'\n", "\\item 'OAW28'\n", "\\item 'OV7'\n", "\\item 'BICR6'\n", "\\item 'KMS34'\n", "\\item 'NOMO1'\n", "\\item 'SKM1'\n", "\\item 'U251MG'\n", "\\item 'YH13'\n", "\\item 'HUH7'\n", "\\item 'JHH5'\n", "\\item 'JHH7'\n", "\\item 'IM95'\n", "\\item 'MKN45'\n", "\\item 'OVTOKO'\n", "\\item 'RMGI'\n", "\\item 'RMUGS'\n", "\\item 'TYKNU'\n", "\\item 'HEC108'\n", "\\item 'HEC151'\n", "\\item 'HEC251'\n", "\\item 'HEC265'\n", "\\item 'SNGM'\n", "\\item 'SKL'\n", "\\item 'T3M10'\n", "\\item 'CJM'\n", "\\item 'GI1'\n", "\\item 'CW2'\n", "\\item 'RCC10RGB'\n", "\\item 'OVK18'\n", "\\item 'JHUEM2'\n", "\\item 'OVCAR8'\n", "\\item 'OCILY3'\n", "\\end{enumerate*}\n" ], "text/markdown": [ "1. '1HAE'\n", "2. 'AALE'\n", "3. 'AG06263_2'\n", "4. 'AG06840_A'\n", "5. 'AG078N1_1'\n", "6. 'C42'\n", "7. 'CD34'\n", "8. 'HAP1'\n", "9. 'HEK293T'\n", "10. 'HIMG001'\n", "11. 'HIMG002'\n", "12. 'HME'\n", "13. 'HMELZ'\n", "14. 'HPTEC'\n", "15. 'HS27A'\n", "16. 'HUES3'\n", "17. 'HUH751'\n", "18. 'HUVEC'\n", "19. 'IPS-15-2'\n", "20. 'IPS-3'\n", "21. 'IPS-ND34732'\n", "22. 'LHSAR'\n", "23. 'MCH58'\n", "24. 'MCLF0067SZ'\n", "25. 'MCLF015CN'\n", "26. 'MCLF022CN'\n", "27. 'MCLF027CN'\n", "28. 'MCLF033SZ'\n", "29. 'MCLF035SZ'\n", "30. 'MCLF037SZ'\n", "31. 'MCLF040SZ'\n", "32. 'MCLF051CN'\n", "33. 'MCLF054CN'\n", "34. 'MCLF056CN'\n", "35. 'MCLF076SZ'\n", "36. 'MCLF100SZ'\n", "37. 'MCLF117SZ'\n", "38. 'MCLF123SZ'\n", "39. 'MCLF126CN'\n", "40. 'MCLF130CN'\n", "41. 'MCLF135CN'\n", "42. 'MCLF137CN'\n", "43. 'MCLF141SZ'\n", "44. 'MCLF162SZ'\n", "45. 'MICROGLIA-PSEN1'\n", "46. 'MNEU'\n", "47. 'NAMEC8'\n", "48. 'ND34732_7'\n", "49. 'NKDBA'\n", "50. 'P1A82'\n", "51. 'P2X2B2'\n", "52. 'SKB'\n", "53. 'WA09'\n", "54. 'XC.500'\n", "55. 'XC.L10'\n", "56. 'XC.L100'\n", "57. 'XC.P026'\n", "58. 'XC.P031'\n", "59. 'XC.P033'\n", "60. 'XC.P091'\n", "61. 'XC.P092'\n", "62. 'XC.P901'\n", "63. 'XC.P904'\n", "64. 'XC.P905'\n", "65. 'XC.P906'\n", "66. 'XC.P907'\n", "67. 'XC.P908'\n", "68. 'XC.P909'\n", "69. 'XC.P910'\n", "70. 'XC.P911'\n", "71. 'XC.P912'\n", "72. 'XC.P914'\n", "73. 'XC.P915'\n", "74. 'XC.P922'\n", "75. 'XC.P930'\n", "76. 'XC.P931'\n", "77. 'XC.P932'\n", "78. 'XC.P933'\n", "79. 'XC.P934'\n", "80. 'XC.P935'\n", "81. 'XC.P936'\n", "82. 'XC.R10'\n", "83. 'HME1'\n", "84. 'BJAB'\n", "85. 'HBL1'\n", "86. 'OCILY10'\n", "87. 'TMD8'\n", "88. 'TC32'\n", "89. 'H1299'\n", "90. 'H1975'\n", "91. 'HCC515'\n", "92. 'SALE'\n", "93. 'SHSY5Y'\n", "94. '22RV1'\n", "95. 'HEC1A'\n", "96. 'NL20'\n", "97. 'PHH'\n", "98. 'HA1E'\n", "99. 'HEK293'\n", "100. 'HEKTE'\n", "101. 'NEU'\n", "102. 'NPC'\n", "103. 'ASC'\n", "104. 'U266B1'\n", "105. 'HL60'\n", "106. 'K562'\n", "107. 'TF1'\n", "108. 'THP1'\n", "109. 'MINO'\n", "110. 'U937'\n", "111. 'A673'\n", "112. 'SKES1'\n", "113. 'U2OS'\n", "114. 'A549'\n", "115. 'HCC827'\n", "116. 'NCIH1437'\n", "117. 'NCIH1563'\n", "118. 'NCIH1573'\n", "119. 'NCIH1694'\n", "120. 'NCIH1781'\n", "121. 'NCIH1836'\n", "122. 'NCIH1975'\n", "123. 'NCIH2073'\n", "124. 'NCIH2110'\n", "125. 'NCIH2172'\n", "126. 'NCIH596'\n", "127. 'NCIH838'\n", "128. 'NCIH841'\n", "129. 'SKLU1'\n", "130. 'A375'\n", "131. 'SH4'\n", "132. 'SKMEL1'\n", "133. 'SKMEL28'\n", "134. 'SKMEL3'\n", "135. 'SKMEL5'\n", "136. 'LN229'\n", "137. 'DLD1'\n", "138. 'HCT116'\n", "139. 'HT29'\n", "140. 'LOVO'\n", "141. 'NCIH508'\n", "142. 'NCIH716'\n", "143. 'RKO'\n", "144. 'SW480'\n", "145. 'SW620'\n", "146. 'SW948'\n", "147. 'HEPG2'\n", "148. 'BT20'\n", "149. 'BT474'\n", "150. 'HS578T'\n", "151. 'MCF10A'\n", "152. 'MCF7'\n", "153. 'MDAMB231'\n", "154. 'MDAMB468'\n", "155. 'SKBR3'\n", "156. 'T47D'\n", "157. 'ZR751'\n", "158. 'G401'\n", "159. 'SKNSH'\n", "160. '5637'\n", "161. 'J82'\n", "162. 'AGS'\n", "163. 'ES2'\n", "164. 'HELA'\n", "165. 'DU145'\n", "166. 'PC3'\n", "167. 'RWPE1'\n", "168. 'VCAP'\n", "169. 'A204'\n", "170. 'AN3CA'\n", "171. 'TOV112D'\n", "172. 'WI38'\n", "173. 'JURKAT'\n", "174. 'NALM6'\n", "175. 'PL21'\n", "176. 'OCILY19'\n", "177. 'SUDHL4'\n", "178. 'WSUDLCL2'\n", "179. 'BEN'\n", "180. 'DV90'\n", "181. 'HCC15'\n", "182. 'HCC44'\n", "183. 'IGR37'\n", "184. 'MELHO'\n", "185. 'CL34'\n", "186. 'BC3C'\n", "187. 'CAL29'\n", "188. 'VMCUB1'\n", "189. 'EFO27'\n", "190. 'LNCAP'\n", "191. 'YAPC'\n", "192. 'MFE319'\n", "193. 'OC314'\n", "194. 'OC316'\n", "195. 'HFL1'\n", "196. 'IMR90'\n", "197. 'HCC1588'\n", "198. 'HCC95'\n", "199. 'SNU1040'\n", "200. 'SNU407'\n", "201. 'SNUC4'\n", "202. 'SNUC5'\n", "203. 'CORL23'\n", "204. 'GP2D'\n", "205. 'HT115'\n", "206. 'MDST8'\n", "207. 'COV434'\n", "208. 'COV644'\n", "209. 'OAW28'\n", "210. 'OV7'\n", "211. 'BICR6'\n", "212. 'KMS34'\n", "213. 'NOMO1'\n", "214. 'SKM1'\n", "215. 'U251MG'\n", "216. 'YH13'\n", "217. 'HUH7'\n", "218. 'JHH5'\n", "219. 'JHH7'\n", "220. 'IM95'\n", "221. 'MKN45'\n", "222. 'OVTOKO'\n", "223. 'RMGI'\n", "224. 'RMUGS'\n", "225. 'TYKNU'\n", "226. 'HEC108'\n", "227. 'HEC151'\n", "228. 'HEC251'\n", "229. 'HEC265'\n", "230. 'SNGM'\n", "231. 'SKL'\n", "232. 'T3M10'\n", "233. 'CJM'\n", "234. 'GI1'\n", "235. 'CW2'\n", "236. 'RCC10RGB'\n", "237. 'OVK18'\n", "238. 'JHUEM2'\n", "239. 'OVCAR8'\n", "240. 'OCILY3'\n", "\n", "\n" ], "text/plain": [ " [1] \"1HAE\" \"AALE\" \"AG06263_2\" \"AG06840_A\" \n", " [5] \"AG078N1_1\" \"C42\" \"CD34\" \"HAP1\" \n", " [9] \"HEK293T\" \"HIMG001\" \"HIMG002\" \"HME\" \n", " [13] \"HMELZ\" \"HPTEC\" \"HS27A\" \"HUES3\" \n", " [17] \"HUH751\" \"HUVEC\" \"IPS-15-2\" \"IPS-3\" \n", " [21] \"IPS-ND34732\" \"LHSAR\" \"MCH58\" \"MCLF0067SZ\" \n", " [25] \"MCLF015CN\" \"MCLF022CN\" \"MCLF027CN\" \"MCLF033SZ\" \n", " [29] \"MCLF035SZ\" \"MCLF037SZ\" \"MCLF040SZ\" \"MCLF051CN\" \n", " [33] \"MCLF054CN\" \"MCLF056CN\" \"MCLF076SZ\" \"MCLF100SZ\" \n", " [37] \"MCLF117SZ\" \"MCLF123SZ\" \"MCLF126CN\" \"MCLF130CN\" \n", " [41] \"MCLF135CN\" \"MCLF137CN\" \"MCLF141SZ\" \"MCLF162SZ\" \n", " [45] \"MICROGLIA-PSEN1\" \"MNEU\" \"NAMEC8\" \"ND34732_7\" \n", " [49] \"NKDBA\" \"P1A82\" \"P2X2B2\" \"SKB\" \n", " [53] \"WA09\" \"XC.500\" \"XC.L10\" \"XC.L100\" \n", " [57] \"XC.P026\" \"XC.P031\" \"XC.P033\" \"XC.P091\" \n", " [61] \"XC.P092\" \"XC.P901\" \"XC.P904\" \"XC.P905\" \n", " [65] \"XC.P906\" \"XC.P907\" \"XC.P908\" \"XC.P909\" \n", " [69] \"XC.P910\" \"XC.P911\" \"XC.P912\" \"XC.P914\" \n", " [73] \"XC.P915\" \"XC.P922\" \"XC.P930\" \"XC.P931\" \n", " [77] \"XC.P932\" \"XC.P933\" \"XC.P934\" \"XC.P935\" \n", " [81] \"XC.P936\" \"XC.R10\" \"HME1\" \"BJAB\" \n", " [85] \"HBL1\" \"OCILY10\" \"TMD8\" \"TC32\" \n", " [89] \"H1299\" \"H1975\" \"HCC515\" \"SALE\" \n", " [93] \"SHSY5Y\" \"22RV1\" \"HEC1A\" \"NL20\" \n", " [97] \"PHH\" \"HA1E\" \"HEK293\" \"HEKTE\" \n", "[101] \"NEU\" \"NPC\" \"ASC\" \"U266B1\" \n", "[105] \"HL60\" \"K562\" \"TF1\" \"THP1\" \n", "[109] \"MINO\" \"U937\" \"A673\" \"SKES1\" \n", "[113] \"U2OS\" \"A549\" \"HCC827\" \"NCIH1437\" \n", "[117] \"NCIH1563\" \"NCIH1573\" \"NCIH1694\" \"NCIH1781\" \n", "[121] \"NCIH1836\" \"NCIH1975\" \"NCIH2073\" \"NCIH2110\" \n", "[125] \"NCIH2172\" \"NCIH596\" \"NCIH838\" \"NCIH841\" \n", "[129] \"SKLU1\" \"A375\" \"SH4\" \"SKMEL1\" \n", "[133] \"SKMEL28\" \"SKMEL3\" \"SKMEL5\" \"LN229\" \n", "[137] \"DLD1\" \"HCT116\" \"HT29\" \"LOVO\" \n", "[141] \"NCIH508\" \"NCIH716\" \"RKO\" \"SW480\" \n", "[145] \"SW620\" \"SW948\" \"HEPG2\" \"BT20\" \n", "[149] \"BT474\" \"HS578T\" \"MCF10A\" \"MCF7\" \n", "[153] \"MDAMB231\" \"MDAMB468\" \"SKBR3\" \"T47D\" \n", "[157] \"ZR751\" \"G401\" \"SKNSH\" \"5637\" \n", "[161] \"J82\" \"AGS\" \"ES2\" \"HELA\" \n", "[165] \"DU145\" \"PC3\" \"RWPE1\" \"VCAP\" \n", "[169] \"A204\" \"AN3CA\" \"TOV112D\" \"WI38\" \n", "[173] \"JURKAT\" \"NALM6\" \"PL21\" \"OCILY19\" \n", "[177] \"SUDHL4\" \"WSUDLCL2\" \"BEN\" \"DV90\" \n", "[181] \"HCC15\" \"HCC44\" \"IGR37\" \"MELHO\" \n", "[185] \"CL34\" \"BC3C\" \"CAL29\" \"VMCUB1\" \n", "[189] \"EFO27\" \"LNCAP\" \"YAPC\" \"MFE319\" \n", "[193] \"OC314\" \"OC316\" \"HFL1\" \"IMR90\" \n", "[197] \"HCC1588\" \"HCC95\" \"SNU1040\" \"SNU407\" \n", "[201] \"SNUC4\" \"SNUC5\" \"CORL23\" \"GP2D\" \n", "[205] \"HT115\" \"MDST8\" \"COV434\" \"COV644\" \n", "[209] \"OAW28\" \"OV7\" \"BICR6\" \"KMS34\" \n", "[213] \"NOMO1\" \"SKM1\" \"U251MG\" \"YH13\" \n", "[217] \"HUH7\" \"JHH5\" \"JHH7\" \"IM95\" \n", "[221] \"MKN45\" \"OVTOKO\" \"RMGI\" \"RMUGS\" \n", "[225] \"TYKNU\" \"HEC108\" \"HEC151\" \"HEC251\" \n", "[229] \"HEC265\" \"SNGM\" \"SKL\" \"T3M10\" \n", "[233] \"CJM\" \"GI1\" \"CW2\" \"RCC10RGB\" \n", "[237] \"OVK18\" \"JHUEM2\" \"OVCAR8\" \"OCILY3\" " ] }, "metadata": {}, "output_type": "display_data" } ], "source": [ "cellinfo_beta <- read.table(file = \"cellinfo_beta.modify.txt\", header = T, stringsAsFactors = F, sep = \"\\t\", comment.char = \"!\")\n", "cellinfo_beta$cell_iname" ] }, { "cell_type": "code", "execution_count": 37, "id": "16a3c5f4-a7e8-4e7e-bdc1-60c838a2daf5", "metadata": { "execution": { "iopub.execute_input": "2021-09-23T06:22:57.611433Z", "iopub.status.busy": "2021-09-23T06:22:57.607919Z", "iopub.status.idle": "2021-09-23T06:22:57.657961Z", "shell.execute_reply": "2021-09-23T06:22:57.656660Z" }, "tags": [], "vscode": { "languageId": "r" } }, "outputs": [ { "data": { "text/html": [ "\n", "\n", "\n", "\t\n", "\t\n", "\n", "\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\n", "
A data.frame: 5 × 20
cell_inamecellosaurus_iddonor_agedonor_age_deathdonor_disease_age_onsetdoubling_timegrowth_mediumprovider_catalog_idfeature_idcell_typedonor_ethnicitydonor_sexdonor_tumor_phasecell_lineageprimary_diseasesubtypeprovider_namegrowth_patternccle_namecell_alias
<chr><chr><chr><lgl><lgl><chr><chr><chr><chr><chr><chr><chr><chr><chr><chr><chr><chr><chr><chr><chr>
98HA1E NANA60 MEM-ALPHA (Invitrogen A1049001) supplemented with 10% v/v fetal bovine serum (Sigma F4135) and 1% 100X penicillin-streptomycin-glutamine (Invitrogen 10378-016) normalUnknown UnknownUnknownkidney normal kidney samplenormal kidney sample unknown HA1E_KIDNEY
99HEK293 CVCL_0045 NANA24 ATCC-formulated Eagles Minimum Essential Medium, Catalog No. 30-2003. To make the complete growth medium, add the following components to the base medium: fetal bovine serum to a final concentration of 10%. normalUnknown F Unknownkidney normal kidney samplenormal embryonal kidney sample adherent 293
100HEKTE NANA normalUnknown UnknownUnknownkidney normal kidney samplenormal kidney sample unknown HEKTE_KIDNEY HEK TE
158G401 CVCL_02703 monthsNANA48 McCoys5A CRL-1441c-108tumor CaucasianM Primarysoft_tissuekidney cancer carcinoma ATCC adherentG401_SOFT_TISSUEG 401|G-401
236RCC10RGBCVCL_1647 NANA108DMEM+ 1%FBS c-526tumor Unknown M Unknownkidney kidney cancer carcinoma RIKENadherentRCC10RGB_KIDNEY 10RGB
\n" ], "text/latex": [ "A data.frame: 5 × 20\n", "\\begin{tabular}{r|llllllllllllllllllll}\n", " & cell\\_iname & cellosaurus\\_id & donor\\_age & donor\\_age\\_death & donor\\_disease\\_age\\_onset & doubling\\_time & growth\\_medium & provider\\_catalog\\_id & feature\\_id & cell\\_type & donor\\_ethnicity & donor\\_sex & donor\\_tumor\\_phase & cell\\_lineage & primary\\_disease & subtype & provider\\_name & growth\\_pattern & ccle\\_name & cell\\_alias\\\\\n", " & & & & & & & & & & & & & & & & & & & & \\\\\n", "\\hline\n", "\t98 & HA1E & & & NA & NA & 60 & MEM-ALPHA (Invitrogen A1049001) supplemented with 10\\% v/v fetal bovine serum (Sigma F4135) and 1\\% 100X penicillin-streptomycin-glutamine (Invitrogen 10378-016) & & & normal & Unknown & Unknown & Unknown & kidney & normal kidney sample & normal kidney sample & & unknown & HA1E\\_KIDNEY & \\\\\n", "\t99 & HEK293 & CVCL\\_0045 & & NA & NA & 24 & ATCC-formulated Eagles Minimum Essential Medium, Catalog No. 30-2003. To make the complete growth medium, add the following components to the base medium: fetal bovine serum to a final concentration of 10\\%. & & & normal & Unknown & F & Unknown & kidney & normal kidney sample & normal embryonal kidney sample & & adherent & & 293 \\\\\n", "\t100 & HEKTE & & & NA & NA & & & & & normal & Unknown & Unknown & Unknown & kidney & normal kidney sample & normal kidney sample & & unknown & HEKTE\\_KIDNEY & HEK TE \\\\\n", "\t158 & G401 & CVCL\\_0270 & 3 months & NA & NA & 48 & McCoys5A & CRL-1441 & c-108 & tumor & Caucasian & M & Primary & soft\\_tissue & kidney cancer & carcinoma & ATCC & adherent & G401\\_SOFT\\_TISSUE & G 401\\textbar{}G-401\\\\\n", "\t236 & RCC10RGB & CVCL\\_1647 & & NA & NA & 108 & DMEM+ 1\\%FBS & & c-526 & tumor & Unknown & M & Unknown & kidney & kidney cancer & carcinoma & RIKEN & adherent & RCC10RGB\\_KIDNEY & 10RGB \\\\\n", "\\end{tabular}\n" ], "text/markdown": [ "\n", "A data.frame: 5 × 20\n", "\n", "| | cell_iname <chr> | cellosaurus_id <chr> | donor_age <chr> | donor_age_death <lgl> | donor_disease_age_onset <lgl> | doubling_time <chr> | growth_medium <chr> | provider_catalog_id <chr> | feature_id <chr> | cell_type <chr> | donor_ethnicity <chr> | donor_sex <chr> | donor_tumor_phase <chr> | cell_lineage <chr> | primary_disease <chr> | subtype <chr> | provider_name <chr> | growth_pattern <chr> | ccle_name <chr> | cell_alias <chr> |\n", "|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|\n", "| 98 | HA1E | | | NA | NA | 60 | MEM-ALPHA (Invitrogen A1049001) supplemented with 10% v/v fetal bovine serum (Sigma F4135) and 1% 100X penicillin-streptomycin-glutamine (Invitrogen 10378-016) | | | normal | Unknown | Unknown | Unknown | kidney | normal kidney sample | normal kidney sample | | unknown | HA1E_KIDNEY | |\n", "| 99 | HEK293 | CVCL_0045 | | NA | NA | 24 | ATCC-formulated Eagles Minimum Essential Medium, Catalog No. 30-2003. To make the complete growth medium, add the following components to the base medium: fetal bovine serum to a final concentration of 10%. | | | normal | Unknown | F | Unknown | kidney | normal kidney sample | normal embryonal kidney sample | | adherent | | 293 |\n", "| 100 | HEKTE | | | NA | NA | | | | | normal | Unknown | Unknown | Unknown | kidney | normal kidney sample | normal kidney sample | | unknown | HEKTE_KIDNEY | HEK TE |\n", "| 158 | G401 | CVCL_0270 | 3 months | NA | NA | 48 | McCoys5A | CRL-1441 | c-108 | tumor | Caucasian | M | Primary | soft_tissue | kidney cancer | carcinoma | ATCC | adherent | G401_SOFT_TISSUE | G 401|G-401 |\n", "| 236 | RCC10RGB | CVCL_1647 | | NA | NA | 108 | DMEM+ 1%FBS | | c-526 | tumor | Unknown | M | Unknown | kidney | kidney cancer | carcinoma | RIKEN | adherent | RCC10RGB_KIDNEY | 10RGB |\n", "\n" ], "text/plain": [ " cell_iname cellosaurus_id donor_age donor_age_death donor_disease_age_onset\n", "98 HA1E NA NA \n", "99 HEK293 CVCL_0045 NA NA \n", "100 HEKTE NA NA \n", "158 G401 CVCL_0270 3 months NA NA \n", "236 RCC10RGB CVCL_1647 NA NA \n", " doubling_time\n", "98 60 \n", "99 24 \n", "100 \n", "158 48 \n", "236 108 \n", " growth_medium \n", "98 MEM-ALPHA (Invitrogen A1049001) supplemented with 10% v/v fetal bovine serum (Sigma F4135) and 1% 100X penicillin-streptomycin-glutamine (Invitrogen 10378-016) \n", "99 ATCC-formulated Eagles Minimum Essential Medium, Catalog No. 30-2003. To make the complete growth medium, add the following components to the base medium: fetal bovine serum to a final concentration of 10%.\n", "100 \n", "158 McCoys5A \n", "236 DMEM+ 1%FBS \n", " provider_catalog_id feature_id cell_type donor_ethnicity donor_sex\n", "98 normal Unknown Unknown \n", "99 normal Unknown F \n", "100 normal Unknown Unknown \n", "158 CRL-1441 c-108 tumor Caucasian M \n", "236 c-526 tumor Unknown M \n", " donor_tumor_phase cell_lineage primary_disease \n", "98 Unknown kidney normal kidney sample\n", "99 Unknown kidney normal kidney sample\n", "100 Unknown kidney normal kidney sample\n", "158 Primary soft_tissue kidney cancer \n", "236 Unknown kidney kidney cancer \n", " subtype provider_name growth_pattern\n", "98 normal kidney sample unknown \n", "99 normal embryonal kidney sample adherent \n", "100 normal kidney sample unknown \n", "158 carcinoma ATCC adherent \n", "236 carcinoma RIKEN adherent \n", " ccle_name cell_alias \n", "98 HA1E_KIDNEY \n", "99 293 \n", "100 HEKTE_KIDNEY HEK TE \n", "158 G401_SOFT_TISSUE G 401|G-401\n", "236 RCC10RGB_KIDNEY 10RGB " ] }, "metadata": {}, "output_type": "display_data" } ], "source": [ "#kidney cell line\n", "index <- grep(\"kidney\", cellinfo_beta$primary_disease)\n", "cellinfo_beta[index,]" ] }, { "cell_type": "code", "execution_count": 38, "id": "30ad500d-8d9c-48f3-9e21-58fa3b552151", "metadata": { "execution": { "iopub.execute_input": "2021-09-23T06:23:00.915705Z", "iopub.status.busy": "2021-09-23T06:23:00.912259Z", "iopub.status.idle": "2021-09-23T06:23:00.957267Z", "shell.execute_reply": "2021-09-23T06:23:00.955958Z" }, "tags": [], "vscode": { "languageId": "r" } }, "outputs": [ { "data": { "text/html": [ "
\n", "\t
$`769P`
\n", "\t\t
NULL
\n", "\t
$`786O`
\n", "\t\t
NULL
\n", "\t
$A704
\n", "\t\t
NULL
\n", "\t
$A498
\n", "\t\t
NULL
\n", "\t
$ACHN
\n", "\t\t
NULL
\n", "\t
$CaKi
\n", "\t\t
NULL
\n", "\t
$HEK293
\n", "\t\t
NULL
\n", "\t
$RCC
\n", "\t\t
NULL
\n", "\t
$HEKTE
\n", "\t\t
NULL
\n", "\t
$HA1E
\n", "\t\t
\n", "\n", "\n", "\t\n", "\t\n", "\n", "\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\n", "
A data.frame: 11 × 5
DrugTFZSCOREDrug.namecellLine
<chr><chr><dbl><fct><chr>
67aminomethyltransferase__HA1E__trt_cpHOXC5-2.349426aminomethyltransferaseHA1E
72anagrelide__HA1E__trt_cp ISL1 -2.888882anagrelide HA1E
74ARP-101__HA1E__trt_cp HOXC5-2.420850ARP-101 HA1E
76AVA__HA1E__trt_cp VENTX-2.028199AVA HA1E
101BRD-A51929314__HA1E__trt_cp ISL1 -2.227154BRD-A51929314 HA1E
117BRD-K05402890__HA1E__trt_cp ISL1 -2.309873BRD-K05402890 HA1E
231homoharringtonine__HA1E__trt_cp HOXC5-2.545411homoharringtonine HA1E
282R-59022__HA1E__trt_cp HOXC5-2.440392R-59022 HA1E
303ST-638__HA1E__trt_cp ISL1 -2.139165ST-638 HA1E
314tributyltin__HA1E__trt_cp ISL1 -3.094550tributyltin HA1E
315triphenyl-tin__HA1E__trt_cp ISL1 -2.005953triphenyl-tin HA1E
\n", "
\n", "\t
$G401
\n", "\t\t
NULL
\n", "\t
$RCC10RGB
\n", "\t\t
NULL
\n", "
\n" ], "text/latex": [ "\\begin{description}\n", "\\item[\\$`769P`] NULL\n", "\\item[\\$`786O`] NULL\n", "\\item[\\$A704] NULL\n", "\\item[\\$A498] NULL\n", "\\item[\\$ACHN] NULL\n", "\\item[\\$CaKi] NULL\n", "\\item[\\$HEK293] NULL\n", "\\item[\\$RCC] NULL\n", "\\item[\\$HEKTE] NULL\n", "\\item[\\$HA1E] A data.frame: 11 × 5\n", "\\begin{tabular}{r|lllll}\n", " & Drug & TF & ZSCORE & Drug.name & cellLine\\\\\n", " & & & & & \\\\\n", "\\hline\n", "\t67 & aminomethyltransferase\\_\\_HA1E\\_\\_trt\\_cp & HOXC5 & -2.349426 & aminomethyltransferase & HA1E\\\\\n", "\t72 & anagrelide\\_\\_HA1E\\_\\_trt\\_cp & ISL1 & -2.888882 & anagrelide & HA1E\\\\\n", "\t74 & ARP-101\\_\\_HA1E\\_\\_trt\\_cp & HOXC5 & -2.420850 & ARP-101 & HA1E\\\\\n", "\t76 & AVA\\_\\_HA1E\\_\\_trt\\_cp & VENTX & -2.028199 & AVA & HA1E\\\\\n", "\t101 & BRD-A51929314\\_\\_HA1E\\_\\_trt\\_cp & ISL1 & -2.227154 & BRD-A51929314 & HA1E\\\\\n", "\t117 & BRD-K05402890\\_\\_HA1E\\_\\_trt\\_cp & ISL1 & -2.309873 & BRD-K05402890 & HA1E\\\\\n", "\t231 & homoharringtonine\\_\\_HA1E\\_\\_trt\\_cp & HOXC5 & -2.545411 & homoharringtonine & HA1E\\\\\n", "\t282 & R-59022\\_\\_HA1E\\_\\_trt\\_cp & HOXC5 & -2.440392 & R-59022 & HA1E\\\\\n", "\t303 & ST-638\\_\\_HA1E\\_\\_trt\\_cp & ISL1 & -2.139165 & ST-638 & HA1E\\\\\n", "\t314 & tributyltin\\_\\_HA1E\\_\\_trt\\_cp & ISL1 & -3.094550 & tributyltin & HA1E\\\\\n", "\t315 & triphenyl-tin\\_\\_HA1E\\_\\_trt\\_cp & ISL1 & -2.005953 & triphenyl-tin & HA1E\\\\\n", "\\end{tabular}\n", "\n", "\\item[\\$G401] NULL\n", "\\item[\\$RCC10RGB] NULL\n", "\\end{description}\n" ], "text/markdown": [ "$`769P`\n", ": NULL\n", "$`786O`\n", ": NULL\n", "$A704\n", ": NULL\n", "$A498\n", ": NULL\n", "$ACHN\n", ": NULL\n", "$CaKi\n", ": NULL\n", "$HEK293\n", ": NULL\n", "$RCC\n", ": NULL\n", "$HEKTE\n", ": NULL\n", "$HA1E\n", ": \n", "A data.frame: 11 × 5\n", "\n", "| | Drug <chr> | TF <chr> | ZSCORE <dbl> | Drug.name <fct> | cellLine <chr> |\n", "|---|---|---|---|---|---|\n", "| 67 | aminomethyltransferase__HA1E__trt_cp | HOXC5 | -2.349426 | aminomethyltransferase | HA1E |\n", "| 72 | anagrelide__HA1E__trt_cp | ISL1 | -2.888882 | anagrelide | HA1E |\n", "| 74 | ARP-101__HA1E__trt_cp | HOXC5 | -2.420850 | ARP-101 | HA1E |\n", "| 76 | AVA__HA1E__trt_cp | VENTX | -2.028199 | AVA | HA1E |\n", "| 101 | BRD-A51929314__HA1E__trt_cp | ISL1 | -2.227154 | BRD-A51929314 | HA1E |\n", "| 117 | BRD-K05402890__HA1E__trt_cp | ISL1 | -2.309873 | BRD-K05402890 | HA1E |\n", "| 231 | homoharringtonine__HA1E__trt_cp | HOXC5 | -2.545411 | homoharringtonine | HA1E |\n", "| 282 | R-59022__HA1E__trt_cp | HOXC5 | -2.440392 | R-59022 | HA1E |\n", "| 303 | ST-638__HA1E__trt_cp | ISL1 | -2.139165 | ST-638 | HA1E |\n", "| 314 | tributyltin__HA1E__trt_cp | ISL1 | -3.094550 | tributyltin | HA1E |\n", "| 315 | triphenyl-tin__HA1E__trt_cp | ISL1 | -2.005953 | triphenyl-tin | HA1E |\n", "\n", "\n", "$G401\n", ": NULL\n", "$RCC10RGB\n", ": NULL\n", "\n", "\n" ], "text/plain": [ "$`769P`\n", "NULL\n", "\n", "$`786O`\n", "NULL\n", "\n", "$A704\n", "NULL\n", "\n", "$A498\n", "NULL\n", "\n", "$ACHN\n", "NULL\n", "\n", "$CaKi\n", "NULL\n", "\n", "$HEK293\n", "NULL\n", "\n", "$RCC\n", "NULL\n", "\n", "$HEKTE\n", "NULL\n", "\n", "$HA1E\n", " Drug TF ZSCORE Drug.name\n", "67 aminomethyltransferase__HA1E__trt_cp HOXC5 -2.349426 aminomethyltransferase\n", "72 anagrelide__HA1E__trt_cp ISL1 -2.888882 anagrelide\n", "74 ARP-101__HA1E__trt_cp HOXC5 -2.420850 ARP-101\n", "76 AVA__HA1E__trt_cp VENTX -2.028199 AVA\n", "101 BRD-A51929314__HA1E__trt_cp ISL1 -2.227154 BRD-A51929314\n", "117 BRD-K05402890__HA1E__trt_cp ISL1 -2.309873 BRD-K05402890\n", "231 homoharringtonine__HA1E__trt_cp HOXC5 -2.545411 homoharringtonine\n", "282 R-59022__HA1E__trt_cp HOXC5 -2.440392 R-59022\n", "303 ST-638__HA1E__trt_cp ISL1 -2.139165 ST-638\n", "314 tributyltin__HA1E__trt_cp ISL1 -3.094550 tributyltin\n", "315 triphenyl-tin__HA1E__trt_cp ISL1 -2.005953 triphenyl-tin\n", " cellLine\n", "67 HA1E\n", "72 HA1E\n", "74 HA1E\n", "76 HA1E\n", "101 HA1E\n", "117 HA1E\n", "231 HA1E\n", "282 HA1E\n", "303 HA1E\n", "314 HA1E\n", "315 HA1E\n", "\n", "$G401\n", "NULL\n", "\n", "$RCC10RGB\n", "NULL\n" ] }, "metadata": {}, "output_type": "display_data" } ], "source": [ "#Engineered Kidney --- HA1E, HA1E,HK2\n", "#kidney; Embryo --- HEK293T\n", "RCCl.cellLines <- c(\"769P\", \"786O\", \"A704\", \"A498\", \"ACHN\", \"CaKi\", \"HEK293\", \"RCC\", \"HEKTE\", \"HA1E\", \"G401\", \"RCC10RGB\")\n", "RCC.drug.results <- sapply(RCCl.cellLines, function(x){\n", " index <- grep(x, drug.result$Drug)\n", " if(length(index)>0){\n", " return(drug.result[index,])\n", " }else{\n", " return(NULL)\n", " }\n", "})\n", "RCC.drug.results" ] }, { "cell_type": "code", "execution_count": 39, "id": "9d42620e-ae65-45f2-a333-056cd55d70a1", "metadata": { "execution": { "iopub.execute_input": "2021-09-23T06:23:08.276912Z", "iopub.status.busy": "2021-09-23T06:23:08.273429Z", "iopub.status.idle": "2021-09-23T06:23:08.317468Z", "shell.execute_reply": "2021-09-23T06:23:08.316167Z" }, "tags": [], "vscode": { "languageId": "r" } }, "outputs": [ { "data": { "text/html": [ "\n", "\n", "\n", "\t\n", "\t\n", "\n", "\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\n", "
A data.frame: 11 × 5
DrugTFZSCOREDrug.namecellLine
<fct><chr><dbl><fct><chr>
aminomethyltransferase__HA1E__trt_cpHOXC5-2.349426aminomethyltransferaseHA1E
anagrelide__HA1E__trt_cp ISL1 -2.888882anagrelide HA1E
ARP-101__HA1E__trt_cp HOXC5-2.420850ARP-101 HA1E
AVA__HA1E__trt_cp VENTX-2.028199AVA HA1E
BRD-A51929314__HA1E__trt_cp ISL1 -2.227154BRD-A51929314 HA1E
BRD-K05402890__HA1E__trt_cp ISL1 -2.309873BRD-K05402890 HA1E
homoharringtonine__HA1E__trt_cp HOXC5-2.545411homoharringtonine HA1E
R-59022__HA1E__trt_cp HOXC5-2.440392R-59022 HA1E
ST-638__HA1E__trt_cp ISL1 -2.139165ST-638 HA1E
tributyltin__HA1E__trt_cp ISL1 -3.094550tributyltin HA1E
triphenyl-tin__HA1E__trt_cp ISL1 -2.005953triphenyl-tin HA1E
\n" ], "text/latex": [ "A data.frame: 11 × 5\n", "\\begin{tabular}{lllll}\n", " Drug & TF & ZSCORE & Drug.name & cellLine\\\\\n", " & & & & \\\\\n", "\\hline\n", "\t aminomethyltransferase\\_\\_HA1E\\_\\_trt\\_cp & HOXC5 & -2.349426 & aminomethyltransferase & HA1E\\\\\n", "\t anagrelide\\_\\_HA1E\\_\\_trt\\_cp & ISL1 & -2.888882 & anagrelide & HA1E\\\\\n", "\t ARP-101\\_\\_HA1E\\_\\_trt\\_cp & HOXC5 & -2.420850 & ARP-101 & HA1E\\\\\n", "\t AVA\\_\\_HA1E\\_\\_trt\\_cp & VENTX & -2.028199 & AVA & HA1E\\\\\n", "\t BRD-A51929314\\_\\_HA1E\\_\\_trt\\_cp & ISL1 & -2.227154 & BRD-A51929314 & HA1E\\\\\n", "\t BRD-K05402890\\_\\_HA1E\\_\\_trt\\_cp & ISL1 & -2.309873 & BRD-K05402890 & HA1E\\\\\n", "\t homoharringtonine\\_\\_HA1E\\_\\_trt\\_cp & HOXC5 & -2.545411 & homoharringtonine & HA1E\\\\\n", "\t R-59022\\_\\_HA1E\\_\\_trt\\_cp & HOXC5 & -2.440392 & R-59022 & HA1E\\\\\n", "\t ST-638\\_\\_HA1E\\_\\_trt\\_cp & ISL1 & -2.139165 & ST-638 & HA1E\\\\\n", "\t tributyltin\\_\\_HA1E\\_\\_trt\\_cp & ISL1 & -3.094550 & tributyltin & HA1E\\\\\n", "\t triphenyl-tin\\_\\_HA1E\\_\\_trt\\_cp & ISL1 & -2.005953 & triphenyl-tin & HA1E\\\\\n", "\\end{tabular}\n" ], "text/markdown": [ "\n", "A data.frame: 11 × 5\n", "\n", "| Drug <fct> | TF <chr> | ZSCORE <dbl> | Drug.name <fct> | cellLine <chr> |\n", "|---|---|---|---|---|\n", "| aminomethyltransferase__HA1E__trt_cp | HOXC5 | -2.349426 | aminomethyltransferase | HA1E |\n", "| anagrelide__HA1E__trt_cp | ISL1 | -2.888882 | anagrelide | HA1E |\n", "| ARP-101__HA1E__trt_cp | HOXC5 | -2.420850 | ARP-101 | HA1E |\n", "| AVA__HA1E__trt_cp | VENTX | -2.028199 | AVA | HA1E |\n", "| BRD-A51929314__HA1E__trt_cp | ISL1 | -2.227154 | BRD-A51929314 | HA1E |\n", "| BRD-K05402890__HA1E__trt_cp | ISL1 | -2.309873 | BRD-K05402890 | HA1E |\n", "| homoharringtonine__HA1E__trt_cp | HOXC5 | -2.545411 | homoharringtonine | HA1E |\n", "| R-59022__HA1E__trt_cp | HOXC5 | -2.440392 | R-59022 | HA1E |\n", "| ST-638__HA1E__trt_cp | ISL1 | -2.139165 | ST-638 | HA1E |\n", "| tributyltin__HA1E__trt_cp | ISL1 | -3.094550 | tributyltin | HA1E |\n", "| triphenyl-tin__HA1E__trt_cp | ISL1 | -2.005953 | triphenyl-tin | HA1E |\n", "\n" ], "text/plain": [ " Drug TF ZSCORE Drug.name \n", "1 aminomethyltransferase__HA1E__trt_cp HOXC5 -2.349426 aminomethyltransferase\n", "2 anagrelide__HA1E__trt_cp ISL1 -2.888882 anagrelide \n", "3 ARP-101__HA1E__trt_cp HOXC5 -2.420850 ARP-101 \n", "4 AVA__HA1E__trt_cp VENTX -2.028199 AVA \n", "5 BRD-A51929314__HA1E__trt_cp ISL1 -2.227154 BRD-A51929314 \n", "6 BRD-K05402890__HA1E__trt_cp ISL1 -2.309873 BRD-K05402890 \n", "7 homoharringtonine__HA1E__trt_cp HOXC5 -2.545411 homoharringtonine \n", "8 R-59022__HA1E__trt_cp HOXC5 -2.440392 R-59022 \n", "9 ST-638__HA1E__trt_cp ISL1 -2.139165 ST-638 \n", "10 tributyltin__HA1E__trt_cp ISL1 -3.094550 tributyltin \n", "11 triphenyl-tin__HA1E__trt_cp ISL1 -2.005953 triphenyl-tin \n", " cellLine\n", "1 HA1E \n", "2 HA1E \n", "3 HA1E \n", "4 HA1E \n", "5 HA1E \n", "6 HA1E \n", "7 HA1E \n", "8 HA1E \n", "9 HA1E \n", "10 HA1E \n", "11 HA1E " ] }, "metadata": {}, "output_type": "display_data" } ], "source": [ "####output\n", "RCC.drug.result <- rbind(RCC.drug.results[[7]], RCC.drug.results[[10]])\n", "library (plyr)\n", "library(writexl)\n", "drug.idx <- sort(table(RCC.drug.result$Drug),decreasing = T)\n", "RCC.drug.result$Drug <- factor(RCC.drug.result$Drug, levels = names(drug.idx))\n", "RCC.drug.result <- arrange(RCC.drug.result, Drug)\n", "write_xlsx(RCC.drug.result, \"/data/active_data/lzl/RenalTumor-20200713/DataAnalysis-20210803/Drug/LINCS/lincs.TF.RCC.negative.drug.result.xlsx\")\n", "RCC.drug.result" ] }, { "cell_type": "code", "execution_count": 40, "id": "ab3e7788-a5fe-46ec-ba50-c149a53e81fb", "metadata": { "execution": { "iopub.execute_input": "2021-09-23T06:23:15.996376Z", "iopub.status.busy": "2021-09-23T06:23:15.992831Z", "iopub.status.idle": "2021-09-23T06:23:16.293657Z", "shell.execute_reply": "2021-09-23T06:23:16.292420Z" }, "scrolled": true, "tags": [], "vscode": { "languageId": "r" } }, "outputs": [ { "data": { "text/html": [ "\n", "\n", "\n", "\t\n", "\t\n", "\n", "\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\n", "
A data.frame: 52 × 36
.idbead_batchnearest_dosepert_dosepert_dose_unitpert_idosepert_itimepert_timepert_time_unitcell_mfc_namesig_idpert_typecell_inamedet_wellsdet_platesdistil_idsbuild_nameproject_codecmap_nameis_ncs_exemplar
<chr><chr><dbl><dbl><chr><chr><chr><dbl><chr><chr><chr><chr><chr><chr><chr><chr><lgl><chr><chr><int>
aminomethyltransferase__HA1E__trt_cpb3 10.00010.00000000uM10 uM 24 h24hHA1ECPC001_HA1E_24H:BRD-A28318179-003-03-6:10 trt_cpHA1EJ07 CPC001_HA1E_24H_X1_B3_DUO52HI53LO|CPC001_HA1E_24H_X2_B3_DUO52HI53LO|CPC001_HA1E_24H_X3_B3_DUO52HI53LO CPC001_HA1E_24H_X1_B3_DUO52HI53LO:J07|CPC001_HA1E_24H_X2_B3_DUO52HI53LO:J07|CPC001_HA1E_24H_X3_B3_DUO52HI53LO:J07 NACPC aminomethyltransferase0
aminomethyltransferase__HA1E__trt_cpb3 10.00010.00000000uM10 uM 6 h 6hHA1ECPC001_HA1E_6H:BRD-A28318179-003-03-6:10 trt_cpHA1EJ07 CPC001_HA1E_6H_X1_B3_DUO52HI53LO|CPC001_HA1E_6H_X2_B3_DUO52HI53LO|CPC001_HA1E_6H_X3_B3_DUO52HI53LO CPC001_HA1E_6H_X1_B3_DUO52HI53LO:J07|CPC001_HA1E_6H_X2_B3_DUO52HI53LO:J07|CPC001_HA1E_6H_X3_B3_DUO52HI53LO:J07 NACPC aminomethyltransferase1
anagrelide__HA1E__trt_cp b3 10.00010.00000000uM10 uM 6 h 6hHA1ECPC004_HA1E_6H:BRD-K62200014-003-05-5:10 trt_cpHA1EL03 CPC004_HA1E_6H_X1_B3_DUO52HI53LO|CPC004_HA1E_6H_X2_B3_DUO52HI53LO|CPC004_HA1E_6H_X3_B3_DUO52HI53LO CPC004_HA1E_6H_X1_B3_DUO52HI53LO:L03|CPC004_HA1E_6H_X2_B3_DUO52HI53LO:L03|CPC004_HA1E_6H_X3_B3_DUO52HI53LO:L03 NACPC anagrelide 0
anagrelide__HA1E__trt_cp f1b310.00010.00000000uM10 uM 6 h 6hHA1ECPC011_HA1E_6H:BRD-K62200014-003-07-1:10 trt_cpHA1EH10 CPC011_HA1E_6H_X1_F1B3_DUO52HI53LO|CPC011_HA1E_6H_X3_F1B3_DUO52HI53LO CPC011_HA1E_6H_X1_F1B3_DUO52HI53LO:H10|CPC011_HA1E_6H_X3_F1B3_DUO52HI53LO:H10 NACPC anagrelide 0
anagrelide__HA1E__trt_cp b23 0.740 0.76923100uM0.74 uM 24 h24hHA1EREP.B018_HA1E_24H:B14 trt_cpHA1EB14 REP.B018_HA1E_24H_X1_B23|REP.B018_HA1E_24H_X2_B23 REP.B018_HA1E_24H_X1_B23:B14|REP.B018_HA1E_24H_X2_B23:B14 NAREP anagrelide 1
anagrelide__HA1E__trt_cp b24 1.110 1.11111000uM1.11 uM 24 h24hHA1EREP.A018_HA1E_24H:B15 trt_cpHA1EB15 REP.A018_HA1E_24H_X1_B24|REP.A018_HA1E_24H_X2_B23|REP.A018_HA1E_24H_X3_B23 REP.A018_HA1E_24H_X1_B24:B15|REP.A018_HA1E_24H_X2_B23:B15|REP.A018_HA1E_24H_X3_B23:B15 NAREP anagrelide 0
anagrelide__HA1E__trt_cp b24 0.040 0.04115230uM0.04 uM 24 h24hHA1EREP.A018_HA1E_24H:B18 trt_cpHA1EB18 REP.A018_HA1E_24H_X1_B24|REP.A018_HA1E_24H_X2_B23|REP.A018_HA1E_24H_X3_B23 REP.A018_HA1E_24H_X1_B24:B18|REP.A018_HA1E_24H_X2_B23:B18|REP.A018_HA1E_24H_X3_B23:B18 NAREP anagrelide 0
anagrelide__HA1E__trt_cp b23 0.080 0.08547010uM0.08 uM 24 h24hHA1EREP.B018_HA1E_24H:B16 trt_cpHA1EB16 REP.B018_HA1E_24H_X1_B23|REP.B018_HA1E_24H_X2_B23 REP.B018_HA1E_24H_X1_B23:B16|REP.B018_HA1E_24H_X2_B23:B16 NAREP anagrelide 0
anagrelide__HA1E__trt_cp b24 10.00010.00000000uM10 uM 24 h24hHA1EREP.A018_HA1E_24H:B13 trt_cpHA1EB13 REP.A018_HA1E_24H_X1_B24|REP.A018_HA1E_24H_X2_B23|REP.A018_HA1E_24H_X3_B23 REP.A018_HA1E_24H_X1_B24:B13|REP.A018_HA1E_24H_X2_B23:B13|REP.A018_HA1E_24H_X3_B23:B13 NAREP anagrelide 0
anagrelide__HA1E__trt_cp b23 0.250 0.25641000uM0.25 uM 24 h24hHA1EREP.B018_HA1E_24H:B15 trt_cpHA1EB15 REP.B018_HA1E_24H_X1_B23|REP.B018_HA1E_24H_X2_B23 REP.B018_HA1E_24H_X1_B23:B15|REP.B018_HA1E_24H_X2_B23:B15 NAREP anagrelide 0
anagrelide__HA1E__trt_cp b24 0.125 0.12345700uM0.125 uM24 h24hHA1EREP.A018_HA1E_24H:B17 trt_cpHA1EB17 REP.A018_HA1E_24H_X1_B24|REP.A018_HA1E_24H_X2_B23|REP.A018_HA1E_24H_X3_B23 REP.A018_HA1E_24H_X1_B24:B17|REP.A018_HA1E_24H_X2_B23:B17|REP.A018_HA1E_24H_X3_B23:B17 NAREP anagrelide 0
anagrelide__HA1E__trt_cp b23 0.010 0.00949668uM0.01 uM 24 h24hHA1EREP.B018_HA1E_24H:B18 trt_cpHA1EB18 REP.B018_HA1E_24H_X1_B23|REP.B018_HA1E_24H_X2_B23 REP.B018_HA1E_24H_X1_B23:B18|REP.B018_HA1E_24H_X2_B23:B18 NAREP anagrelide 0
anagrelide__HA1E__trt_cp b24 0.370 0.37037000uM0.37 uM 24 h24hHA1EREP.A018_HA1E_24H:B16 trt_cpHA1EB16 REP.A018_HA1E_24H_X1_B24|REP.A018_HA1E_24H_X2_B23|REP.A018_HA1E_24H_X3_B23 REP.A018_HA1E_24H_X1_B24:B16|REP.A018_HA1E_24H_X2_B23:B16|REP.A018_HA1E_24H_X3_B23:B16 NAREP anagrelide 0
anagrelide__HA1E__trt_cp b24 3.330 3.33333000uM3.33 uM 24 h24hHA1EREP.A018_HA1E_24H:B14 trt_cpHA1EB14 REP.A018_HA1E_24H_X1_B24|REP.A018_HA1E_24H_X2_B23|REP.A018_HA1E_24H_X3_B23 REP.A018_HA1E_24H_X1_B24:B14|REP.A018_HA1E_24H_X2_B23:B14|REP.A018_HA1E_24H_X3_B23:B14 NAREP anagrelide 0
anagrelide__HA1E__trt_cp b23 2.220 2.30769000uM2.22 uM 24 h24hHA1EREP.B018_HA1E_24H:B13 trt_cpHA1EB13 REP.B018_HA1E_24H_X1_B23|REP.B018_HA1E_24H_X2_B23 REP.B018_HA1E_24H_X1_B23:B13|REP.B018_HA1E_24H_X2_B23:B13 NAREP anagrelide 0
anagrelide__HA1E__trt_cp b23 0.030 0.02849000uM0.03 uM 24 h24hHA1EREP.B018_HA1E_24H:B17 trt_cpHA1EB17 REP.B018_HA1E_24H_X1_B23|REP.B018_HA1E_24H_X2_B23 REP.B018_HA1E_24H_X1_B23:B17|REP.B018_HA1E_24H_X2_B23:B17 NAREP anagrelide 0
ARP-101__HA1E__trt_cp b3 10.00010.00000000uM10 uM 6 h 6hHA1ECPC006_HA1E_6H:BRD-K73395020-001-01-5:10 trt_cpHA1EK04 CPC006_HA1E_6H_X1_B3_DUO52HI53LO|CPC006_HA1E_6H_X2_B3_DUO52HI53LO|CPC006_HA1E_6H_X3_B3_DUO52HI53LO|CPC006_HA1E_6H_X4_B4_DUO52HI53LO|CPC006_HA1E_6H_X5_B4_DUO52HI53LOCPC006_HA1E_6H_X1_B3_DUO52HI53LO:K04|CPC006_HA1E_6H_X2_B3_DUO52HI53LO:K04|CPC006_HA1E_6H_X3_B3_DUO52HI53LO:K04|CPC006_HA1E_6H_X4_B4_DUO52HI53LO:K04|CPC006_HA1E_6H_X5_B4_DUO52HI53LO:K04 NACPC ARP-101 0
ARP-101__HA1E__trt_cp b24 0.030 0.02849000uM0.03 uM 24 h24hHA1EREP.B007_HA1E_24H:M17 trt_cpHA1EM17 REP.B007_HA1E_24H_X1_B24 REP.B007_HA1E_24H_X1_B24:M17 NAREP ARP-101 0
ARP-101__HA1E__trt_cp b22 0.040 0.04115230uM0.04 uM 24 h24hHA1EREP.A007_HA1E_24H:M18 trt_cpHA1EM18 REP.A007_HA1E_24H_X1_B22|REP.A007_HA1E_24H_X2_B24|REP.A007_HA1E_24H_X3_B22 REP.A007_HA1E_24H_X1_B22:M18|REP.A007_HA1E_24H_X2_B24:M18|REP.A007_HA1E_24H_X3_B22:M18 NAREP ARP-101 0
ARP-101__HA1E__trt_cp b24 0.250 0.25641000uM0.25 uM 24 h24hHA1EREP.B007_HA1E_24H:M15 trt_cpHA1EM15 REP.B007_HA1E_24H_X1_B24 REP.B007_HA1E_24H_X1_B24:M15 NAREP ARP-101 0
ARP-101__HA1E__trt_cp b22 0.125 0.12345700uM0.125 uM24 h24hHA1EREP.A007_HA1E_24H:M17 trt_cpHA1EM17 REP.A007_HA1E_24H_X1_B22|REP.A007_HA1E_24H_X2_B24|REP.A007_HA1E_24H_X3_B22 REP.A007_HA1E_24H_X1_B22:M17|REP.A007_HA1E_24H_X2_B24:M17|REP.A007_HA1E_24H_X3_B22:M17 NAREP ARP-101 0
ARP-101__HA1E__trt_cp b24 2.220 2.30769000uM2.22 uM 24 h24hHA1EREP.B007_HA1E_24H:M13 trt_cpHA1EM13 REP.B007_HA1E_24H_X1_B24 REP.B007_HA1E_24H_X1_B24:M13 NAREP ARP-101 0
ARP-101__HA1E__trt_cp b24 0.010 0.00949668uM0.01 uM 24 h24hHA1EREP.B007_HA1E_24H:M18 trt_cpHA1EM18 REP.B007_HA1E_24H_X1_B24 REP.B007_HA1E_24H_X1_B24:M18 NAREP ARP-101 0
ARP-101__HA1E__trt_cp b24 0.080 0.08547010uM0.08 uM 24 h24hHA1EREP.B007_HA1E_24H:M16 trt_cpHA1EM16 REP.B007_HA1E_24H_X1_B24 REP.B007_HA1E_24H_X1_B24:M16 NAREP ARP-101 0
ARP-101__HA1E__trt_cp b22 10.00010.00000000uM10 uM 24 h24hHA1EREP.A007_HA1E_24H:M13 trt_cpHA1EM13 REP.A007_HA1E_24H_X1_B22|REP.A007_HA1E_24H_X2_B24|REP.A007_HA1E_24H_X3_B22 REP.A007_HA1E_24H_X1_B22:M13|REP.A007_HA1E_24H_X2_B24:M13|REP.A007_HA1E_24H_X3_B22:M13 NAREP ARP-101 0
ARP-101__HA1E__trt_cp b22 0.370 0.37037000uM0.37 uM 24 h24hHA1EREP.A007_HA1E_24H:M16 trt_cpHA1EM16 REP.A007_HA1E_24H_X1_B22|REP.A007_HA1E_24H_X3_B22 REP.A007_HA1E_24H_X1_B22:M16|REP.A007_HA1E_24H_X3_B22:M16 NAREP ARP-101 0
ARP-101__HA1E__trt_cp b22 1.110 1.11111000uM1.11 uM 24 h24hHA1EREP.A007_HA1E_24H:M15 trt_cpHA1EM15 REP.A007_HA1E_24H_X1_B22|REP.A007_HA1E_24H_X2_B24|REP.A007_HA1E_24H_X3_B22 REP.A007_HA1E_24H_X1_B22:M15|REP.A007_HA1E_24H_X2_B24:M15|REP.A007_HA1E_24H_X3_B22:M15 NAREP ARP-101 0
ARP-101__HA1E__trt_cp b22 3.330 3.33333000uM3.33 uM 24 h24hHA1EREP.A007_HA1E_24H:M14 trt_cpHA1EM14 REP.A007_HA1E_24H_X1_B22|REP.A007_HA1E_24H_X2_B24|REP.A007_HA1E_24H_X3_B22 REP.A007_HA1E_24H_X1_B22:M14|REP.A007_HA1E_24H_X2_B24:M14|REP.A007_HA1E_24H_X3_B22:M14 NAREP ARP-101 1
ARP-101__HA1E__trt_cp b24 0.740 0.76923100uM0.74 uM 24 h24hHA1EREP.B007_HA1E_24H:M14 trt_cpHA1EM14 REP.B007_HA1E_24H_X1_B24 REP.B007_HA1E_24H_X1_B24:M14 NAREP ARP-101 0
AVA__HA1E__trt_cp b13 3.330 3.33000000uM3.33 uM 24 h24hHA1EPCLB003_HA1E_24H:BRD-K10466330-001-01-5:3.33 trt_cpHA1EN20 PCLB003_HA1E_24H_X1_B13|PCLB003_HA1E_24H_X2_B13|PCLB003_HA1E_24H_X3_B13 PCLB003_HA1E_24H_X1_B13:N20|PCLB003_HA1E_24H_X2_B13:N20|PCLB003_HA1E_24H_X3_B13:N20 NAPCLB AVA 0
AVA__HA1E__trt_cp b13 0.370 0.37000000uM0.37 uM 24 h24hHA1EPCLB003_HA1E_24H:BRD-K10466330-001-01-5:0.37 trt_cpHA1EN22 PCLB003_HA1E_24H_X1_B13|PCLB003_HA1E_24H_X2_B13|PCLB003_HA1E_24H_X3_B13 PCLB003_HA1E_24H_X1_B13:N22|PCLB003_HA1E_24H_X2_B13:N22|PCLB003_HA1E_24H_X3_B13:N22 NAPCLB AVA 0
AVA__HA1E__trt_cp b13 1.110 1.11000000uM1.11 uM 24 h24hHA1EPCLB003_HA1E_24H:BRD-K10466330-001-01-5:1.11 trt_cpHA1EN21 PCLB003_HA1E_24H_X1_B13|PCLB003_HA1E_24H_X2_B13|PCLB003_HA1E_24H_X3_B13 PCLB003_HA1E_24H_X1_B13:N21|PCLB003_HA1E_24H_X2_B13:N21|PCLB003_HA1E_24H_X3_B13:N21 NAPCLB AVA 0
AVA__HA1E__trt_cp b13 0.040 0.04000000uM0.04 uM 24 h24hHA1EPCLB003_HA1E_24H:BRD-K10466330-001-01-5:0.04 trt_cpHA1EN24 PCLB003_HA1E_24H_X1_B13|PCLB003_HA1E_24H_X2_B13|PCLB003_HA1E_24H_X3_B13 PCLB003_HA1E_24H_X1_B13:N24|PCLB003_HA1E_24H_X2_B13:N24|PCLB003_HA1E_24H_X3_B13:N24 NAPCLB AVA 0
AVA__HA1E__trt_cp b13 10.00010.00000000uM10 uM 24 h24hHA1EPCLB003_HA1E_24H:BRD-K10466330-001-01-5:10 trt_cpHA1EN19 PCLB003_HA1E_24H_X1_B13|PCLB003_HA1E_24H_X2_B13|PCLB003_HA1E_24H_X3_B13 PCLB003_HA1E_24H_X1_B13:N19|PCLB003_HA1E_24H_X2_B13:N19|PCLB003_HA1E_24H_X3_B13:N19 NAPCLB AVA 1
AVA__HA1E__trt_cp b13 0.120 0.12000000uM0.12 uM 24 h24hHA1EPCLB003_HA1E_24H:BRD-K10466330-001-01-5:0.12 trt_cpHA1EN23 PCLB003_HA1E_24H_X1_B13|PCLB003_HA1E_24H_X2_B13|PCLB003_HA1E_24H_X3_B13 PCLB003_HA1E_24H_X1_B13:N23|PCLB003_HA1E_24H_X2_B13:N23|PCLB003_HA1E_24H_X3_B13:N23 NAPCLB AVA 0
BRD-K05402890__HA1E__trt_cp f1b3 0.370 0.35000000uM0.37 uM 24 h24hHA1ECPC006_HA1E_24H:N13 trt_cpHA1EN13 CPC006_HA1E_24H_X1.A2_F1B3_DUO52HI53LO|CPC006_HA1E_24H_X2_B3_DUO52HI53LO|CPC006_HA1E_24H_X3_B3_DUO52HI53LO CPC006_HA1E_24H_X1.A2_F1B3_DUO52HI53LO:N13|CPC006_HA1E_24H_X2_B3_DUO52HI53LO:N13|CPC006_HA1E_24H_X3_B3_DUO52HI53LO:N13 NACPC BRD-K05402890 0
BRD-K05402890__HA1E__trt_cp b3 10.00010.00000000uM10 uM 24 h24hHA1ECPC007_HA1E_24H:BRD-K05402890-001-09-2:10 trt_cpHA1EH03 CPC007_HA1E_24H_X1_B3_DUO52HI53LO|CPC007_HA1E_24H_X2_B3_DUO52HI53LO|CPC007_HA1E_24H_X3_B3_DUO52HI53LO CPC007_HA1E_24H_X1_B3_DUO52HI53LO:H03|CPC007_HA1E_24H_X2_B3_DUO52HI53LO:H03|CPC007_HA1E_24H_X3_B3_DUO52HI53LO:H03 NACPC BRD-K05402890 1
BRD-K05402890__HA1E__trt_cp b3 10.00010.00000000uM10 uM 6 h 6hHA1ECPC007_HA1E_6H:BRD-K05402890-001-09-2:10 trt_cpHA1EH03 CPC007_HA1E_6H_X1_B3_DUO52HI53LO|CPC007_HA1E_6H_X2_B3_DUO52HI53LO|CPC007_HA1E_6H_X3_B3_DUO52HI53LO CPC007_HA1E_6H_X1_B3_DUO52HI53LO:H03|CPC007_HA1E_6H_X2_B3_DUO52HI53LO:H03|CPC007_HA1E_6H_X3_B3_DUO52HI53LO:H03 NACPC BRD-K05402890 0
BRD-K05402890__HA1E__trt_cp b21 0.370 0.37037000uM0.37 uM 24 h24hHA1EPBIOA014_HA1E_24H:L04 trt_cpHA1EL04 PBIOA014_HA1E_24H_X2_B21|PBIOA014_HA1E_24H_X3_B21 PBIOA014_HA1E_24H_X2_B21:L04|PBIOA014_HA1E_24H_X3_B21:L04 NAPBIOABRD-K05402890 0
BRD-K05402890__HA1E__trt_cp b21 0.125 0.12345700uM0.125 uM24 h24hHA1EPBIOA014_HA1E_24H:L05 trt_cpHA1EL05 PBIOA014_HA1E_24H_X1_B21|PBIOA014_HA1E_24H_X2_B21|PBIOA014_HA1E_24H_X3_B21 PBIOA014_HA1E_24H_X1_B21:L05|PBIOA014_HA1E_24H_X2_B21:L05|PBIOA014_HA1E_24H_X3_B21:L05 NAPBIOABRD-K05402890 0
BRD-K05402890__HA1E__trt_cp b21 3.330 3.33333000uM3.33 uM 24 h24hHA1EPBIOA014_HA1E_24H:L02 trt_cpHA1EL02 PBIOA014_HA1E_24H_X1_B21|PBIOA014_HA1E_24H_X2_B21|PBIOA014_HA1E_24H_X3_B21 PBIOA014_HA1E_24H_X1_B21:L02|PBIOA014_HA1E_24H_X2_B21:L02|PBIOA014_HA1E_24H_X3_B21:L02 NAPBIOABRD-K05402890 0
BRD-K05402890__HA1E__trt_cp b21 1.110 1.11111000uM1.11 uM 24 h24hHA1EPBIOA014_HA1E_24H:L03 trt_cpHA1EL03 PBIOA014_HA1E_24H_X1_B21|PBIOA014_HA1E_24H_X2_B21|PBIOA014_HA1E_24H_X3_B21 PBIOA014_HA1E_24H_X1_B21:L03|PBIOA014_HA1E_24H_X2_B21:L03|PBIOA014_HA1E_24H_X3_B21:L03 NAPBIOABRD-K05402890 0
BRD-K05402890__HA1E__trt_cp b21 10.00010.00000000uM10 uM 24 h24hHA1EPBIOA014_HA1E_24H:L01 trt_cpHA1EL01 PBIOA014_HA1E_24H_X1_B21|PBIOA014_HA1E_24H_X2_B21|PBIOA014_HA1E_24H_X3_B21 PBIOA014_HA1E_24H_X1_B21:L01|PBIOA014_HA1E_24H_X2_B21:L01|PBIOA014_HA1E_24H_X3_B21:L01 NAPBIOABRD-K05402890 0
BRD-K05402890__HA1E__trt_cp b21 0.040 0.04115230uM0.04 uM 24 h24hHA1EPBIOA014_HA1E_24H:L06 trt_cpHA1EL06 PBIOA014_HA1E_24H_X1_B21|PBIOA014_HA1E_24H_X2_B21|PBIOA014_HA1E_24H_X3_B21 PBIOA014_HA1E_24H_X1_B21:L06|PBIOA014_HA1E_24H_X2_B21:L06|PBIOA014_HA1E_24H_X3_B21:L06 NAPBIOABRD-K05402890 0
R-59022__HA1E__trt_cp b3 10.00010.00000000uM10 uM 6 h 6hHA1ECPC005_HA1E_6H:BRD-K54665485-001-04-6:10 trt_cpHA1EP15 CPC005_HA1E_6H_X3_B3_DUO52HI53LO CPC005_HA1E_6H_X3_B3_DUO52HI53LO:P15 NACPC R-59022 0
ST-638__HA1E__trt_cp b3 10.00010.00000000uM10 uM 6 h 6hHA1ECPC005_HA1E_6H:BRD-K51476772-001-01-9:10 trt_cpHA1ED03 CPC005_HA1E_6H_X1_B3_DUO52HI53LO|CPC005_HA1E_6H_X3_B3_DUO52HI53LO CPC005_HA1E_6H_X1_B3_DUO52HI53LO:D03|CPC005_HA1E_6H_X3_B3_DUO52HI53LO:D03 NACPC ST-638 0
tributyltin__HA1E__trt_cp f1b710.00010.00000000uM10 uM 6 h 6hHA1ECRCGN004_HA1E_6H:BRD-K88145757-001-01-6:10 trt_cpHA1EH15|I13|L18 CRCGN004_HA1E_6H_X6_F1B7_DUO52HI53LO CRCGN004_HA1E_6H_X6_F1B7_DUO52HI53LO:H15|CRCGN004_HA1E_6H_X6_F1B7_DUO52HI53LO:I13|CRCGN004_HA1E_6H_X6_F1B7_DUO52HI53LO:L18 NACRCGNtributyltin 0
tributyltin__HA1E__trt_cp f1b410.00010.00000000uM10 uM 24 h24hHA1ECRCGN001_HA1E_24H:BRD-K88145757-001-01-6:10 trt_cpHA1EH15|I13 CRCGN001_HA1E_24H_X1_F1B4_DUO52HI53LO|CRCGN001_HA1E_24H_X3_F1B4_DUO52HI53LO CRCGN001_HA1E_24H_X1_F1B4_DUO52HI53LO:H15|CRCGN001_HA1E_24H_X3_F1B4_DUO52HI53LO:I13 NACRCGNtributyltin 1
triphenyl-tin__HA1E__trt_cp f1b710.00010.00000000uM10 uM 24 h24hHA1ECRCGN004_HA1E_24H:BRD-K78683072-001-01-6:10 trt_cpHA1ED19|F18|G07 CRCGN004_HA1E_24H_X6_F1B7_DUO52HI53LO|CRCGN004_HA1E_24H_X7_F1B7_DUO52HI53LO|CRCGN004_HA1E_24H_X8_F1B7_DUO52HI53LO CRCGN004_HA1E_24H_X6_F1B7_DUO52HI53LO:D19|CRCGN004_HA1E_24H_X6_F1B7_DUO52HI53LO:F18|CRCGN004_HA1E_24H_X6_F1B7_DUO52HI53LO:G07|CRCGN004_HA1E_24H_X7_F1B7_DUO52HI53LO:D19|CRCGN004_HA1E_24H_X7_F1B7_DUO52HI53LO:F18|CRCGN004_HA1E_24H_X7_F1B7_DUO52HI53LO:G07|CRCGN004_HA1E_24H_X8_F1B7_DUO52HI53LO:D19|CRCGN004_HA1E_24H_X8_F1B7_DUO52HI53LO:F18|CRCGN004_HA1E_24H_X8_F1B7_DUO52HI53LO:G07 NACRCGNtriphenyl-tin 0
triphenyl-tin__HA1E__trt_cp f1b710.00010.00000000uM10 uM 24 h24hHA1ECRCGN004_HA1E_24H:BRD-K78683072-001-01-6:10UMtrt_cpHA1ED19|F18|G07 CRCGN004_HA1E_24H_X6_F1B7_DUO52HI53LO|CRCGN004_HA1E_24H_X7_F1B7_DUO52HI53LO|CRCGN004_HA1E_24H_X8_F1B7_DUO52HI53LO CRCGN004_HA1E_24H_X6_F1B7_DUO52HI53LO:D19|CRCGN004_HA1E_24H_X6_F1B7_DUO52HI53LO:F18|CRCGN004_HA1E_24H_X6_F1B7_DUO52HI53LO:G07|CRCGN004_HA1E_24H_X7_F1B7_DUO52HI53LO:D19|CRCGN004_HA1E_24H_X7_F1B7_DUO52HI53LO:F18|CRCGN004_HA1E_24H_X7_F1B7_DUO52HI53LO:G07|CRCGN004_HA1E_24H_X8_F1B7_DUO52HI53LO:D19|CRCGN004_HA1E_24H_X8_F1B7_DUO52HI53LO:F18|CRCGN004_HA1E_24H_X8_F1B7_DUO52HI53LO:G07 NACRCGNtriphenyl-tin 0
triphenyl-tin__HA1E__trt_cp f1b410.00010.00000000uM10 uM 6 h 6hHA1ECRCGN001_HA1E_6H:BRD-K78683072-001-01-6:10 trt_cpHA1ED19|F18|G07 CRCGN001_HA1E_6H_X1_F1B4_DUO52HI53LO|CRCGN001_HA1E_6H_X2_F1B4_DUO52HI53LO|CRCGN001_HA1E_6H_X3_F1B4_DUO52HI53LO CRCGN001_HA1E_6H_X1_F1B4_DUO52HI53LO:D19|CRCGN001_HA1E_6H_X1_F1B4_DUO52HI53LO:F18|CRCGN001_HA1E_6H_X1_F1B4_DUO52HI53LO:G07|CRCGN001_HA1E_6H_X2_F1B4_DUO52HI53LO:D19|CRCGN001_HA1E_6H_X2_F1B4_DUO52HI53LO:F18|CRCGN001_HA1E_6H_X2_F1B4_DUO52HI53LO:G07|CRCGN001_HA1E_6H_X3_F1B4_DUO52HI53LO:D19|CRCGN001_HA1E_6H_X3_F1B4_DUO52HI53LO:F18|CRCGN001_HA1E_6H_X3_F1B4_DUO52HI53LO:G07 NACRCGNtriphenyl-tin 0
triphenyl-tin__HA1E__trt_cp f1b410.00010.00000000uM10 uM 24 h24hHA1ECRCGN001_HA1E_24H:BRD-K78683072-001-01-6:10 trt_cpHA1ED14|D19|F18|G07|K11CRCGN001_HA1E_24H_X1_F1B4_DUO52HI53LO|CRCGN001_HA1E_24H_X2_F1B4_DUO52HI53LO|CRCGN001_HA1E_24H_X3_F1B4_DUO52HI53LO CRCGN001_HA1E_24H_X1_F1B4_DUO52HI53LO:D14|CRCGN001_HA1E_24H_X1_F1B4_DUO52HI53LO:D19|CRCGN001_HA1E_24H_X1_F1B4_DUO52HI53LO:F18|CRCGN001_HA1E_24H_X1_F1B4_DUO52HI53LO:G07|CRCGN001_HA1E_24H_X2_F1B4_DUO52HI53LO:D19|CRCGN001_HA1E_24H_X2_F1B4_DUO52HI53LO:F18|CRCGN001_HA1E_24H_X2_F1B4_DUO52HI53LO:G07|CRCGN001_HA1E_24H_X2_F1B4_DUO52HI53LO:K11|CRCGN001_HA1E_24H_X3_F1B4_DUO52HI53LO:D14|CRCGN001_HA1E_24H_X3_F1B4_DUO52HI53LO:D19|CRCGN001_HA1E_24H_X3_F1B4_DUO52HI53LO:F18|CRCGN001_HA1E_24H_X3_F1B4_DUO52HI53LO:G07NACRCGNtriphenyl-tin 0
\n" ], "text/latex": [ "A data.frame: 52 × 36\n", "\\begin{tabular}{lllllllllllllllllllll}\n", " .id & bead\\_batch & nearest\\_dose & pert\\_dose & pert\\_dose\\_unit & pert\\_idose & pert\\_itime & pert\\_time & pert\\_time\\_unit & cell\\_mfc\\_name & ⋯ & sig\\_id & pert\\_type & cell\\_iname & det\\_wells & det\\_plates & distil\\_ids & build\\_name & project\\_code & cmap\\_name & is\\_ncs\\_exemplar\\\\\n", " & & & & & & & & & & ⋯ & & & & & & & & & & \\\\\n", "\\hline\n", "\t aminomethyltransferase\\_\\_HA1E\\_\\_trt\\_cp & b3 & 10.000 & 10.00000000 & uM & 10 uM & 24 h & 24 & h & HA1E & ⋯ & CPC001\\_HA1E\\_24H:BRD-A28318179-003-03-6:10 & trt\\_cp & HA1E & J07 & CPC001\\_HA1E\\_24H\\_X1\\_B3\\_DUO52HI53LO\\textbar{}CPC001\\_HA1E\\_24H\\_X2\\_B3\\_DUO52HI53LO\\textbar{}CPC001\\_HA1E\\_24H\\_X3\\_B3\\_DUO52HI53LO & CPC001\\_HA1E\\_24H\\_X1\\_B3\\_DUO52HI53LO:J07\\textbar{}CPC001\\_HA1E\\_24H\\_X2\\_B3\\_DUO52HI53LO:J07\\textbar{}CPC001\\_HA1E\\_24H\\_X3\\_B3\\_DUO52HI53LO:J07 & NA & CPC & aminomethyltransferase & 0\\\\\n", "\t aminomethyltransferase\\_\\_HA1E\\_\\_trt\\_cp & b3 & 10.000 & 10.00000000 & uM & 10 uM & 6 h & 6 & h & HA1E & ⋯ & CPC001\\_HA1E\\_6H:BRD-A28318179-003-03-6:10 & trt\\_cp & HA1E & J07 & CPC001\\_HA1E\\_6H\\_X1\\_B3\\_DUO52HI53LO\\textbar{}CPC001\\_HA1E\\_6H\\_X2\\_B3\\_DUO52HI53LO\\textbar{}CPC001\\_HA1E\\_6H\\_X3\\_B3\\_DUO52HI53LO & CPC001\\_HA1E\\_6H\\_X1\\_B3\\_DUO52HI53LO:J07\\textbar{}CPC001\\_HA1E\\_6H\\_X2\\_B3\\_DUO52HI53LO:J07\\textbar{}CPC001\\_HA1E\\_6H\\_X3\\_B3\\_DUO52HI53LO:J07 & NA & CPC & aminomethyltransferase & 1\\\\\n", "\t anagrelide\\_\\_HA1E\\_\\_trt\\_cp & b3 & 10.000 & 10.00000000 & uM & 10 uM & 6 h & 6 & h & HA1E & ⋯ & CPC004\\_HA1E\\_6H:BRD-K62200014-003-05-5:10 & trt\\_cp & HA1E & L03 & CPC004\\_HA1E\\_6H\\_X1\\_B3\\_DUO52HI53LO\\textbar{}CPC004\\_HA1E\\_6H\\_X2\\_B3\\_DUO52HI53LO\\textbar{}CPC004\\_HA1E\\_6H\\_X3\\_B3\\_DUO52HI53LO & CPC004\\_HA1E\\_6H\\_X1\\_B3\\_DUO52HI53LO:L03\\textbar{}CPC004\\_HA1E\\_6H\\_X2\\_B3\\_DUO52HI53LO:L03\\textbar{}CPC004\\_HA1E\\_6H\\_X3\\_B3\\_DUO52HI53LO:L03 & NA & CPC & anagrelide & 0\\\\\n", "\t anagrelide\\_\\_HA1E\\_\\_trt\\_cp & f1b3 & 10.000 & 10.00000000 & uM & 10 uM & 6 h & 6 & h & HA1E & ⋯ & CPC011\\_HA1E\\_6H:BRD-K62200014-003-07-1:10 & trt\\_cp & HA1E & H10 & CPC011\\_HA1E\\_6H\\_X1\\_F1B3\\_DUO52HI53LO\\textbar{}CPC011\\_HA1E\\_6H\\_X3\\_F1B3\\_DUO52HI53LO & CPC011\\_HA1E\\_6H\\_X1\\_F1B3\\_DUO52HI53LO:H10\\textbar{}CPC011\\_HA1E\\_6H\\_X3\\_F1B3\\_DUO52HI53LO:H10 & NA & CPC & anagrelide & 0\\\\\n", "\t anagrelide\\_\\_HA1E\\_\\_trt\\_cp & b23 & 0.740 & 0.76923100 & uM & 0.74 uM & 24 h & 24 & h & HA1E & ⋯ & REP.B018\\_HA1E\\_24H:B14 & trt\\_cp & HA1E & B14 & REP.B018\\_HA1E\\_24H\\_X1\\_B23\\textbar{}REP.B018\\_HA1E\\_24H\\_X2\\_B23 & REP.B018\\_HA1E\\_24H\\_X1\\_B23:B14\\textbar{}REP.B018\\_HA1E\\_24H\\_X2\\_B23:B14 & NA & REP & anagrelide & 1\\\\\n", "\t anagrelide\\_\\_HA1E\\_\\_trt\\_cp & b24 & 1.110 & 1.11111000 & uM & 1.11 uM & 24 h & 24 & h & HA1E & ⋯ & REP.A018\\_HA1E\\_24H:B15 & trt\\_cp & HA1E & B15 & REP.A018\\_HA1E\\_24H\\_X1\\_B24\\textbar{}REP.A018\\_HA1E\\_24H\\_X2\\_B23\\textbar{}REP.A018\\_HA1E\\_24H\\_X3\\_B23 & REP.A018\\_HA1E\\_24H\\_X1\\_B24:B15\\textbar{}REP.A018\\_HA1E\\_24H\\_X2\\_B23:B15\\textbar{}REP.A018\\_HA1E\\_24H\\_X3\\_B23:B15 & NA & REP & anagrelide & 0\\\\\n", "\t anagrelide\\_\\_HA1E\\_\\_trt\\_cp & b24 & 0.040 & 0.04115230 & uM & 0.04 uM & 24 h & 24 & h & HA1E & ⋯ & REP.A018\\_HA1E\\_24H:B18 & trt\\_cp & HA1E & B18 & REP.A018\\_HA1E\\_24H\\_X1\\_B24\\textbar{}REP.A018\\_HA1E\\_24H\\_X2\\_B23\\textbar{}REP.A018\\_HA1E\\_24H\\_X3\\_B23 & REP.A018\\_HA1E\\_24H\\_X1\\_B24:B18\\textbar{}REP.A018\\_HA1E\\_24H\\_X2\\_B23:B18\\textbar{}REP.A018\\_HA1E\\_24H\\_X3\\_B23:B18 & NA & REP & anagrelide & 0\\\\\n", "\t anagrelide\\_\\_HA1E\\_\\_trt\\_cp & b23 & 0.080 & 0.08547010 & uM & 0.08 uM & 24 h & 24 & h & HA1E & ⋯ & REP.B018\\_HA1E\\_24H:B16 & trt\\_cp & HA1E & B16 & REP.B018\\_HA1E\\_24H\\_X1\\_B23\\textbar{}REP.B018\\_HA1E\\_24H\\_X2\\_B23 & REP.B018\\_HA1E\\_24H\\_X1\\_B23:B16\\textbar{}REP.B018\\_HA1E\\_24H\\_X2\\_B23:B16 & NA & REP & anagrelide & 0\\\\\n", "\t anagrelide\\_\\_HA1E\\_\\_trt\\_cp & b24 & 10.000 & 10.00000000 & uM & 10 uM & 24 h & 24 & h & HA1E & ⋯ & REP.A018\\_HA1E\\_24H:B13 & trt\\_cp & HA1E & B13 & REP.A018\\_HA1E\\_24H\\_X1\\_B24\\textbar{}REP.A018\\_HA1E\\_24H\\_X2\\_B23\\textbar{}REP.A018\\_HA1E\\_24H\\_X3\\_B23 & REP.A018\\_HA1E\\_24H\\_X1\\_B24:B13\\textbar{}REP.A018\\_HA1E\\_24H\\_X2\\_B23:B13\\textbar{}REP.A018\\_HA1E\\_24H\\_X3\\_B23:B13 & NA & REP & anagrelide & 0\\\\\n", "\t anagrelide\\_\\_HA1E\\_\\_trt\\_cp & b23 & 0.250 & 0.25641000 & uM & 0.25 uM & 24 h & 24 & h & HA1E & ⋯ & REP.B018\\_HA1E\\_24H:B15 & trt\\_cp & HA1E & B15 & REP.B018\\_HA1E\\_24H\\_X1\\_B23\\textbar{}REP.B018\\_HA1E\\_24H\\_X2\\_B23 & REP.B018\\_HA1E\\_24H\\_X1\\_B23:B15\\textbar{}REP.B018\\_HA1E\\_24H\\_X2\\_B23:B15 & NA & REP & anagrelide & 0\\\\\n", "\t anagrelide\\_\\_HA1E\\_\\_trt\\_cp & b24 & 0.125 & 0.12345700 & uM & 0.125 uM & 24 h & 24 & h & HA1E & ⋯ & REP.A018\\_HA1E\\_24H:B17 & trt\\_cp & HA1E & B17 & REP.A018\\_HA1E\\_24H\\_X1\\_B24\\textbar{}REP.A018\\_HA1E\\_24H\\_X2\\_B23\\textbar{}REP.A018\\_HA1E\\_24H\\_X3\\_B23 & REP.A018\\_HA1E\\_24H\\_X1\\_B24:B17\\textbar{}REP.A018\\_HA1E\\_24H\\_X2\\_B23:B17\\textbar{}REP.A018\\_HA1E\\_24H\\_X3\\_B23:B17 & NA & REP & anagrelide & 0\\\\\n", "\t anagrelide\\_\\_HA1E\\_\\_trt\\_cp & b23 & 0.010 & 0.00949668 & uM & 0.01 uM & 24 h & 24 & h & HA1E & ⋯ & REP.B018\\_HA1E\\_24H:B18 & trt\\_cp & HA1E & B18 & REP.B018\\_HA1E\\_24H\\_X1\\_B23\\textbar{}REP.B018\\_HA1E\\_24H\\_X2\\_B23 & REP.B018\\_HA1E\\_24H\\_X1\\_B23:B18\\textbar{}REP.B018\\_HA1E\\_24H\\_X2\\_B23:B18 & NA & REP & anagrelide & 0\\\\\n", "\t anagrelide\\_\\_HA1E\\_\\_trt\\_cp & b24 & 0.370 & 0.37037000 & uM & 0.37 uM & 24 h & 24 & h & HA1E & ⋯ & REP.A018\\_HA1E\\_24H:B16 & trt\\_cp & HA1E & B16 & REP.A018\\_HA1E\\_24H\\_X1\\_B24\\textbar{}REP.A018\\_HA1E\\_24H\\_X2\\_B23\\textbar{}REP.A018\\_HA1E\\_24H\\_X3\\_B23 & REP.A018\\_HA1E\\_24H\\_X1\\_B24:B16\\textbar{}REP.A018\\_HA1E\\_24H\\_X2\\_B23:B16\\textbar{}REP.A018\\_HA1E\\_24H\\_X3\\_B23:B16 & NA & REP & anagrelide & 0\\\\\n", "\t anagrelide\\_\\_HA1E\\_\\_trt\\_cp & b24 & 3.330 & 3.33333000 & uM & 3.33 uM & 24 h & 24 & h & HA1E & ⋯ & REP.A018\\_HA1E\\_24H:B14 & trt\\_cp & HA1E & B14 & REP.A018\\_HA1E\\_24H\\_X1\\_B24\\textbar{}REP.A018\\_HA1E\\_24H\\_X2\\_B23\\textbar{}REP.A018\\_HA1E\\_24H\\_X3\\_B23 & REP.A018\\_HA1E\\_24H\\_X1\\_B24:B14\\textbar{}REP.A018\\_HA1E\\_24H\\_X2\\_B23:B14\\textbar{}REP.A018\\_HA1E\\_24H\\_X3\\_B23:B14 & NA & REP & anagrelide & 0\\\\\n", "\t anagrelide\\_\\_HA1E\\_\\_trt\\_cp & b23 & 2.220 & 2.30769000 & uM & 2.22 uM & 24 h & 24 & h & HA1E & ⋯ & REP.B018\\_HA1E\\_24H:B13 & trt\\_cp & HA1E & B13 & REP.B018\\_HA1E\\_24H\\_X1\\_B23\\textbar{}REP.B018\\_HA1E\\_24H\\_X2\\_B23 & REP.B018\\_HA1E\\_24H\\_X1\\_B23:B13\\textbar{}REP.B018\\_HA1E\\_24H\\_X2\\_B23:B13 & NA & REP & anagrelide & 0\\\\\n", "\t anagrelide\\_\\_HA1E\\_\\_trt\\_cp & b23 & 0.030 & 0.02849000 & uM & 0.03 uM & 24 h & 24 & h & HA1E & ⋯ & REP.B018\\_HA1E\\_24H:B17 & trt\\_cp & HA1E & B17 & REP.B018\\_HA1E\\_24H\\_X1\\_B23\\textbar{}REP.B018\\_HA1E\\_24H\\_X2\\_B23 & REP.B018\\_HA1E\\_24H\\_X1\\_B23:B17\\textbar{}REP.B018\\_HA1E\\_24H\\_X2\\_B23:B17 & NA & REP & anagrelide & 0\\\\\n", "\t ARP-101\\_\\_HA1E\\_\\_trt\\_cp & b3 & 10.000 & 10.00000000 & uM & 10 uM & 6 h & 6 & h & HA1E & ⋯ & CPC006\\_HA1E\\_6H:BRD-K73395020-001-01-5:10 & trt\\_cp & HA1E & K04 & CPC006\\_HA1E\\_6H\\_X1\\_B3\\_DUO52HI53LO\\textbar{}CPC006\\_HA1E\\_6H\\_X2\\_B3\\_DUO52HI53LO\\textbar{}CPC006\\_HA1E\\_6H\\_X3\\_B3\\_DUO52HI53LO\\textbar{}CPC006\\_HA1E\\_6H\\_X4\\_B4\\_DUO52HI53LO\\textbar{}CPC006\\_HA1E\\_6H\\_X5\\_B4\\_DUO52HI53LO & CPC006\\_HA1E\\_6H\\_X1\\_B3\\_DUO52HI53LO:K04\\textbar{}CPC006\\_HA1E\\_6H\\_X2\\_B3\\_DUO52HI53LO:K04\\textbar{}CPC006\\_HA1E\\_6H\\_X3\\_B3\\_DUO52HI53LO:K04\\textbar{}CPC006\\_HA1E\\_6H\\_X4\\_B4\\_DUO52HI53LO:K04\\textbar{}CPC006\\_HA1E\\_6H\\_X5\\_B4\\_DUO52HI53LO:K04 & NA & CPC & ARP-101 & 0\\\\\n", "\t ARP-101\\_\\_HA1E\\_\\_trt\\_cp & b24 & 0.030 & 0.02849000 & uM & 0.03 uM & 24 h & 24 & h & HA1E & ⋯ & REP.B007\\_HA1E\\_24H:M17 & trt\\_cp & HA1E & M17 & REP.B007\\_HA1E\\_24H\\_X1\\_B24 & REP.B007\\_HA1E\\_24H\\_X1\\_B24:M17 & NA & REP & ARP-101 & 0\\\\\n", "\t ARP-101\\_\\_HA1E\\_\\_trt\\_cp & b22 & 0.040 & 0.04115230 & uM & 0.04 uM & 24 h & 24 & h & HA1E & ⋯ & REP.A007\\_HA1E\\_24H:M18 & trt\\_cp & HA1E & M18 & REP.A007\\_HA1E\\_24H\\_X1\\_B22\\textbar{}REP.A007\\_HA1E\\_24H\\_X2\\_B24\\textbar{}REP.A007\\_HA1E\\_24H\\_X3\\_B22 & REP.A007\\_HA1E\\_24H\\_X1\\_B22:M18\\textbar{}REP.A007\\_HA1E\\_24H\\_X2\\_B24:M18\\textbar{}REP.A007\\_HA1E\\_24H\\_X3\\_B22:M18 & NA & REP & ARP-101 & 0\\\\\n", "\t ARP-101\\_\\_HA1E\\_\\_trt\\_cp & b24 & 0.250 & 0.25641000 & uM & 0.25 uM & 24 h & 24 & h & HA1E & ⋯ & REP.B007\\_HA1E\\_24H:M15 & trt\\_cp & HA1E & M15 & REP.B007\\_HA1E\\_24H\\_X1\\_B24 & REP.B007\\_HA1E\\_24H\\_X1\\_B24:M15 & NA & REP & ARP-101 & 0\\\\\n", "\t ARP-101\\_\\_HA1E\\_\\_trt\\_cp & b22 & 0.125 & 0.12345700 & uM & 0.125 uM & 24 h & 24 & h & HA1E & ⋯ & REP.A007\\_HA1E\\_24H:M17 & trt\\_cp & HA1E & M17 & REP.A007\\_HA1E\\_24H\\_X1\\_B22\\textbar{}REP.A007\\_HA1E\\_24H\\_X2\\_B24\\textbar{}REP.A007\\_HA1E\\_24H\\_X3\\_B22 & REP.A007\\_HA1E\\_24H\\_X1\\_B22:M17\\textbar{}REP.A007\\_HA1E\\_24H\\_X2\\_B24:M17\\textbar{}REP.A007\\_HA1E\\_24H\\_X3\\_B22:M17 & NA & REP & ARP-101 & 0\\\\\n", "\t ARP-101\\_\\_HA1E\\_\\_trt\\_cp & b24 & 2.220 & 2.30769000 & uM & 2.22 uM & 24 h & 24 & h & HA1E & ⋯ & REP.B007\\_HA1E\\_24H:M13 & trt\\_cp & HA1E & M13 & REP.B007\\_HA1E\\_24H\\_X1\\_B24 & REP.B007\\_HA1E\\_24H\\_X1\\_B24:M13 & NA & REP & ARP-101 & 0\\\\\n", "\t ARP-101\\_\\_HA1E\\_\\_trt\\_cp & b24 & 0.010 & 0.00949668 & uM & 0.01 uM & 24 h & 24 & h & HA1E & ⋯ & REP.B007\\_HA1E\\_24H:M18 & trt\\_cp & HA1E & M18 & REP.B007\\_HA1E\\_24H\\_X1\\_B24 & REP.B007\\_HA1E\\_24H\\_X1\\_B24:M18 & NA & REP & ARP-101 & 0\\\\\n", "\t ARP-101\\_\\_HA1E\\_\\_trt\\_cp & b24 & 0.080 & 0.08547010 & uM & 0.08 uM & 24 h & 24 & h & HA1E & ⋯ & REP.B007\\_HA1E\\_24H:M16 & trt\\_cp & HA1E & M16 & REP.B007\\_HA1E\\_24H\\_X1\\_B24 & REP.B007\\_HA1E\\_24H\\_X1\\_B24:M16 & NA & REP & ARP-101 & 0\\\\\n", "\t ARP-101\\_\\_HA1E\\_\\_trt\\_cp & b22 & 10.000 & 10.00000000 & uM & 10 uM & 24 h & 24 & h & HA1E & ⋯ & REP.A007\\_HA1E\\_24H:M13 & trt\\_cp & HA1E & M13 & REP.A007\\_HA1E\\_24H\\_X1\\_B22\\textbar{}REP.A007\\_HA1E\\_24H\\_X2\\_B24\\textbar{}REP.A007\\_HA1E\\_24H\\_X3\\_B22 & REP.A007\\_HA1E\\_24H\\_X1\\_B22:M13\\textbar{}REP.A007\\_HA1E\\_24H\\_X2\\_B24:M13\\textbar{}REP.A007\\_HA1E\\_24H\\_X3\\_B22:M13 & NA & REP & ARP-101 & 0\\\\\n", "\t ARP-101\\_\\_HA1E\\_\\_trt\\_cp & b22 & 0.370 & 0.37037000 & uM & 0.37 uM & 24 h & 24 & h & HA1E & ⋯ & REP.A007\\_HA1E\\_24H:M16 & trt\\_cp & HA1E & M16 & REP.A007\\_HA1E\\_24H\\_X1\\_B22\\textbar{}REP.A007\\_HA1E\\_24H\\_X3\\_B22 & REP.A007\\_HA1E\\_24H\\_X1\\_B22:M16\\textbar{}REP.A007\\_HA1E\\_24H\\_X3\\_B22:M16 & NA & REP & ARP-101 & 0\\\\\n", "\t ARP-101\\_\\_HA1E\\_\\_trt\\_cp & b22 & 1.110 & 1.11111000 & uM & 1.11 uM & 24 h & 24 & h & HA1E & ⋯ & REP.A007\\_HA1E\\_24H:M15 & trt\\_cp & HA1E & M15 & REP.A007\\_HA1E\\_24H\\_X1\\_B22\\textbar{}REP.A007\\_HA1E\\_24H\\_X2\\_B24\\textbar{}REP.A007\\_HA1E\\_24H\\_X3\\_B22 & REP.A007\\_HA1E\\_24H\\_X1\\_B22:M15\\textbar{}REP.A007\\_HA1E\\_24H\\_X2\\_B24:M15\\textbar{}REP.A007\\_HA1E\\_24H\\_X3\\_B22:M15 & NA & REP & ARP-101 & 0\\\\\n", "\t ARP-101\\_\\_HA1E\\_\\_trt\\_cp & b22 & 3.330 & 3.33333000 & uM & 3.33 uM & 24 h & 24 & h & HA1E & ⋯ & REP.A007\\_HA1E\\_24H:M14 & trt\\_cp & HA1E & M14 & REP.A007\\_HA1E\\_24H\\_X1\\_B22\\textbar{}REP.A007\\_HA1E\\_24H\\_X2\\_B24\\textbar{}REP.A007\\_HA1E\\_24H\\_X3\\_B22 & REP.A007\\_HA1E\\_24H\\_X1\\_B22:M14\\textbar{}REP.A007\\_HA1E\\_24H\\_X2\\_B24:M14\\textbar{}REP.A007\\_HA1E\\_24H\\_X3\\_B22:M14 & NA & REP & ARP-101 & 1\\\\\n", "\t ARP-101\\_\\_HA1E\\_\\_trt\\_cp & b24 & 0.740 & 0.76923100 & uM & 0.74 uM & 24 h & 24 & h & HA1E & ⋯ & REP.B007\\_HA1E\\_24H:M14 & trt\\_cp & HA1E & M14 & REP.B007\\_HA1E\\_24H\\_X1\\_B24 & REP.B007\\_HA1E\\_24H\\_X1\\_B24:M14 & NA & REP & ARP-101 & 0\\\\\n", "\t AVA\\_\\_HA1E\\_\\_trt\\_cp & b13 & 3.330 & 3.33000000 & uM & 3.33 uM & 24 h & 24 & h & HA1E & ⋯ & PCLB003\\_HA1E\\_24H:BRD-K10466330-001-01-5:3.33 & trt\\_cp & HA1E & N20 & PCLB003\\_HA1E\\_24H\\_X1\\_B13\\textbar{}PCLB003\\_HA1E\\_24H\\_X2\\_B13\\textbar{}PCLB003\\_HA1E\\_24H\\_X3\\_B13 & PCLB003\\_HA1E\\_24H\\_X1\\_B13:N20\\textbar{}PCLB003\\_HA1E\\_24H\\_X2\\_B13:N20\\textbar{}PCLB003\\_HA1E\\_24H\\_X3\\_B13:N20 & NA & PCLB & AVA & 0\\\\\n", "\t AVA\\_\\_HA1E\\_\\_trt\\_cp & b13 & 0.370 & 0.37000000 & uM & 0.37 uM & 24 h & 24 & h & HA1E & ⋯ & PCLB003\\_HA1E\\_24H:BRD-K10466330-001-01-5:0.37 & trt\\_cp & HA1E & N22 & PCLB003\\_HA1E\\_24H\\_X1\\_B13\\textbar{}PCLB003\\_HA1E\\_24H\\_X2\\_B13\\textbar{}PCLB003\\_HA1E\\_24H\\_X3\\_B13 & PCLB003\\_HA1E\\_24H\\_X1\\_B13:N22\\textbar{}PCLB003\\_HA1E\\_24H\\_X2\\_B13:N22\\textbar{}PCLB003\\_HA1E\\_24H\\_X3\\_B13:N22 & NA & PCLB & AVA & 0\\\\\n", "\t AVA\\_\\_HA1E\\_\\_trt\\_cp & b13 & 1.110 & 1.11000000 & uM & 1.11 uM & 24 h & 24 & h & HA1E & ⋯ & PCLB003\\_HA1E\\_24H:BRD-K10466330-001-01-5:1.11 & trt\\_cp & HA1E & N21 & PCLB003\\_HA1E\\_24H\\_X1\\_B13\\textbar{}PCLB003\\_HA1E\\_24H\\_X2\\_B13\\textbar{}PCLB003\\_HA1E\\_24H\\_X3\\_B13 & PCLB003\\_HA1E\\_24H\\_X1\\_B13:N21\\textbar{}PCLB003\\_HA1E\\_24H\\_X2\\_B13:N21\\textbar{}PCLB003\\_HA1E\\_24H\\_X3\\_B13:N21 & NA & PCLB & AVA & 0\\\\\n", "\t AVA\\_\\_HA1E\\_\\_trt\\_cp & b13 & 0.040 & 0.04000000 & uM & 0.04 uM & 24 h & 24 & h & HA1E & ⋯ & PCLB003\\_HA1E\\_24H:BRD-K10466330-001-01-5:0.04 & trt\\_cp & HA1E & N24 & PCLB003\\_HA1E\\_24H\\_X1\\_B13\\textbar{}PCLB003\\_HA1E\\_24H\\_X2\\_B13\\textbar{}PCLB003\\_HA1E\\_24H\\_X3\\_B13 & PCLB003\\_HA1E\\_24H\\_X1\\_B13:N24\\textbar{}PCLB003\\_HA1E\\_24H\\_X2\\_B13:N24\\textbar{}PCLB003\\_HA1E\\_24H\\_X3\\_B13:N24 & NA & PCLB & AVA & 0\\\\\n", "\t AVA\\_\\_HA1E\\_\\_trt\\_cp & b13 & 10.000 & 10.00000000 & uM & 10 uM & 24 h & 24 & h & HA1E & ⋯ & PCLB003\\_HA1E\\_24H:BRD-K10466330-001-01-5:10 & trt\\_cp & HA1E & N19 & PCLB003\\_HA1E\\_24H\\_X1\\_B13\\textbar{}PCLB003\\_HA1E\\_24H\\_X2\\_B13\\textbar{}PCLB003\\_HA1E\\_24H\\_X3\\_B13 & PCLB003\\_HA1E\\_24H\\_X1\\_B13:N19\\textbar{}PCLB003\\_HA1E\\_24H\\_X2\\_B13:N19\\textbar{}PCLB003\\_HA1E\\_24H\\_X3\\_B13:N19 & NA & PCLB & AVA & 1\\\\\n", "\t AVA\\_\\_HA1E\\_\\_trt\\_cp & b13 & 0.120 & 0.12000000 & uM & 0.12 uM & 24 h & 24 & h & HA1E & ⋯ & PCLB003\\_HA1E\\_24H:BRD-K10466330-001-01-5:0.12 & trt\\_cp & HA1E & N23 & PCLB003\\_HA1E\\_24H\\_X1\\_B13\\textbar{}PCLB003\\_HA1E\\_24H\\_X2\\_B13\\textbar{}PCLB003\\_HA1E\\_24H\\_X3\\_B13 & PCLB003\\_HA1E\\_24H\\_X1\\_B13:N23\\textbar{}PCLB003\\_HA1E\\_24H\\_X2\\_B13:N23\\textbar{}PCLB003\\_HA1E\\_24H\\_X3\\_B13:N23 & NA & PCLB & AVA & 0\\\\\n", "\t BRD-K05402890\\_\\_HA1E\\_\\_trt\\_cp & f1b3 & 0.370 & 0.35000000 & uM & 0.37 uM & 24 h & 24 & h & HA1E & ⋯ & CPC006\\_HA1E\\_24H:N13 & trt\\_cp & HA1E & N13 & CPC006\\_HA1E\\_24H\\_X1.A2\\_F1B3\\_DUO52HI53LO\\textbar{}CPC006\\_HA1E\\_24H\\_X2\\_B3\\_DUO52HI53LO\\textbar{}CPC006\\_HA1E\\_24H\\_X3\\_B3\\_DUO52HI53LO & CPC006\\_HA1E\\_24H\\_X1.A2\\_F1B3\\_DUO52HI53LO:N13\\textbar{}CPC006\\_HA1E\\_24H\\_X2\\_B3\\_DUO52HI53LO:N13\\textbar{}CPC006\\_HA1E\\_24H\\_X3\\_B3\\_DUO52HI53LO:N13 & NA & CPC & BRD-K05402890 & 0\\\\\n", "\t BRD-K05402890\\_\\_HA1E\\_\\_trt\\_cp & b3 & 10.000 & 10.00000000 & uM & 10 uM & 24 h & 24 & h & HA1E & ⋯ & CPC007\\_HA1E\\_24H:BRD-K05402890-001-09-2:10 & trt\\_cp & HA1E & H03 & CPC007\\_HA1E\\_24H\\_X1\\_B3\\_DUO52HI53LO\\textbar{}CPC007\\_HA1E\\_24H\\_X2\\_B3\\_DUO52HI53LO\\textbar{}CPC007\\_HA1E\\_24H\\_X3\\_B3\\_DUO52HI53LO & CPC007\\_HA1E\\_24H\\_X1\\_B3\\_DUO52HI53LO:H03\\textbar{}CPC007\\_HA1E\\_24H\\_X2\\_B3\\_DUO52HI53LO:H03\\textbar{}CPC007\\_HA1E\\_24H\\_X3\\_B3\\_DUO52HI53LO:H03 & NA & CPC & BRD-K05402890 & 1\\\\\n", "\t BRD-K05402890\\_\\_HA1E\\_\\_trt\\_cp & b3 & 10.000 & 10.00000000 & uM & 10 uM & 6 h & 6 & h & HA1E & ⋯ & CPC007\\_HA1E\\_6H:BRD-K05402890-001-09-2:10 & trt\\_cp & HA1E & H03 & CPC007\\_HA1E\\_6H\\_X1\\_B3\\_DUO52HI53LO\\textbar{}CPC007\\_HA1E\\_6H\\_X2\\_B3\\_DUO52HI53LO\\textbar{}CPC007\\_HA1E\\_6H\\_X3\\_B3\\_DUO52HI53LO & CPC007\\_HA1E\\_6H\\_X1\\_B3\\_DUO52HI53LO:H03\\textbar{}CPC007\\_HA1E\\_6H\\_X2\\_B3\\_DUO52HI53LO:H03\\textbar{}CPC007\\_HA1E\\_6H\\_X3\\_B3\\_DUO52HI53LO:H03 & NA & CPC & BRD-K05402890 & 0\\\\\n", "\t BRD-K05402890\\_\\_HA1E\\_\\_trt\\_cp & b21 & 0.370 & 0.37037000 & uM & 0.37 uM & 24 h & 24 & h & HA1E & ⋯ & PBIOA014\\_HA1E\\_24H:L04 & trt\\_cp & HA1E & L04 & PBIOA014\\_HA1E\\_24H\\_X2\\_B21\\textbar{}PBIOA014\\_HA1E\\_24H\\_X3\\_B21 & PBIOA014\\_HA1E\\_24H\\_X2\\_B21:L04\\textbar{}PBIOA014\\_HA1E\\_24H\\_X3\\_B21:L04 & NA & PBIOA & BRD-K05402890 & 0\\\\\n", "\t BRD-K05402890\\_\\_HA1E\\_\\_trt\\_cp & b21 & 0.125 & 0.12345700 & uM & 0.125 uM & 24 h & 24 & h & HA1E & ⋯ & PBIOA014\\_HA1E\\_24H:L05 & trt\\_cp & HA1E & L05 & PBIOA014\\_HA1E\\_24H\\_X1\\_B21\\textbar{}PBIOA014\\_HA1E\\_24H\\_X2\\_B21\\textbar{}PBIOA014\\_HA1E\\_24H\\_X3\\_B21 & PBIOA014\\_HA1E\\_24H\\_X1\\_B21:L05\\textbar{}PBIOA014\\_HA1E\\_24H\\_X2\\_B21:L05\\textbar{}PBIOA014\\_HA1E\\_24H\\_X3\\_B21:L05 & NA & PBIOA & BRD-K05402890 & 0\\\\\n", "\t BRD-K05402890\\_\\_HA1E\\_\\_trt\\_cp & b21 & 3.330 & 3.33333000 & uM & 3.33 uM & 24 h & 24 & h & HA1E & ⋯ & PBIOA014\\_HA1E\\_24H:L02 & trt\\_cp & HA1E & L02 & PBIOA014\\_HA1E\\_24H\\_X1\\_B21\\textbar{}PBIOA014\\_HA1E\\_24H\\_X2\\_B21\\textbar{}PBIOA014\\_HA1E\\_24H\\_X3\\_B21 & PBIOA014\\_HA1E\\_24H\\_X1\\_B21:L02\\textbar{}PBIOA014\\_HA1E\\_24H\\_X2\\_B21:L02\\textbar{}PBIOA014\\_HA1E\\_24H\\_X3\\_B21:L02 & NA & PBIOA & BRD-K05402890 & 0\\\\\n", "\t BRD-K05402890\\_\\_HA1E\\_\\_trt\\_cp & b21 & 1.110 & 1.11111000 & uM & 1.11 uM & 24 h & 24 & h & HA1E & ⋯ & PBIOA014\\_HA1E\\_24H:L03 & trt\\_cp & HA1E & L03 & PBIOA014\\_HA1E\\_24H\\_X1\\_B21\\textbar{}PBIOA014\\_HA1E\\_24H\\_X2\\_B21\\textbar{}PBIOA014\\_HA1E\\_24H\\_X3\\_B21 & PBIOA014\\_HA1E\\_24H\\_X1\\_B21:L03\\textbar{}PBIOA014\\_HA1E\\_24H\\_X2\\_B21:L03\\textbar{}PBIOA014\\_HA1E\\_24H\\_X3\\_B21:L03 & NA & PBIOA & BRD-K05402890 & 0\\\\\n", "\t BRD-K05402890\\_\\_HA1E\\_\\_trt\\_cp & b21 & 10.000 & 10.00000000 & uM & 10 uM & 24 h & 24 & h & HA1E & ⋯ & PBIOA014\\_HA1E\\_24H:L01 & trt\\_cp & HA1E & L01 & PBIOA014\\_HA1E\\_24H\\_X1\\_B21\\textbar{}PBIOA014\\_HA1E\\_24H\\_X2\\_B21\\textbar{}PBIOA014\\_HA1E\\_24H\\_X3\\_B21 & PBIOA014\\_HA1E\\_24H\\_X1\\_B21:L01\\textbar{}PBIOA014\\_HA1E\\_24H\\_X2\\_B21:L01\\textbar{}PBIOA014\\_HA1E\\_24H\\_X3\\_B21:L01 & NA & PBIOA & BRD-K05402890 & 0\\\\\n", "\t BRD-K05402890\\_\\_HA1E\\_\\_trt\\_cp & b21 & 0.040 & 0.04115230 & uM & 0.04 uM & 24 h & 24 & h & HA1E & ⋯ & PBIOA014\\_HA1E\\_24H:L06 & trt\\_cp & HA1E & L06 & PBIOA014\\_HA1E\\_24H\\_X1\\_B21\\textbar{}PBIOA014\\_HA1E\\_24H\\_X2\\_B21\\textbar{}PBIOA014\\_HA1E\\_24H\\_X3\\_B21 & PBIOA014\\_HA1E\\_24H\\_X1\\_B21:L06\\textbar{}PBIOA014\\_HA1E\\_24H\\_X2\\_B21:L06\\textbar{}PBIOA014\\_HA1E\\_24H\\_X3\\_B21:L06 & NA & PBIOA & BRD-K05402890 & 0\\\\\n", "\t R-59022\\_\\_HA1E\\_\\_trt\\_cp & b3 & 10.000 & 10.00000000 & uM & 10 uM & 6 h & 6 & h & HA1E & ⋯ & CPC005\\_HA1E\\_6H:BRD-K54665485-001-04-6:10 & trt\\_cp & HA1E & P15 & CPC005\\_HA1E\\_6H\\_X3\\_B3\\_DUO52HI53LO & CPC005\\_HA1E\\_6H\\_X3\\_B3\\_DUO52HI53LO:P15 & NA & CPC & R-59022 & 0\\\\\n", "\t ST-638\\_\\_HA1E\\_\\_trt\\_cp & b3 & 10.000 & 10.00000000 & uM & 10 uM & 6 h & 6 & h & HA1E & ⋯ & CPC005\\_HA1E\\_6H:BRD-K51476772-001-01-9:10 & trt\\_cp & HA1E & D03 & CPC005\\_HA1E\\_6H\\_X1\\_B3\\_DUO52HI53LO\\textbar{}CPC005\\_HA1E\\_6H\\_X3\\_B3\\_DUO52HI53LO & CPC005\\_HA1E\\_6H\\_X1\\_B3\\_DUO52HI53LO:D03\\textbar{}CPC005\\_HA1E\\_6H\\_X3\\_B3\\_DUO52HI53LO:D03 & NA & CPC & ST-638 & 0\\\\\n", "\t tributyltin\\_\\_HA1E\\_\\_trt\\_cp & f1b7 & 10.000 & 10.00000000 & uM & 10 uM & 6 h & 6 & h & HA1E & ⋯ & CRCGN004\\_HA1E\\_6H:BRD-K88145757-001-01-6:10 & trt\\_cp & HA1E & H15\\textbar{}I13\\textbar{}L18 & CRCGN004\\_HA1E\\_6H\\_X6\\_F1B7\\_DUO52HI53LO & CRCGN004\\_HA1E\\_6H\\_X6\\_F1B7\\_DUO52HI53LO:H15\\textbar{}CRCGN004\\_HA1E\\_6H\\_X6\\_F1B7\\_DUO52HI53LO:I13\\textbar{}CRCGN004\\_HA1E\\_6H\\_X6\\_F1B7\\_DUO52HI53LO:L18 & NA & CRCGN & tributyltin & 0\\\\\n", "\t tributyltin\\_\\_HA1E\\_\\_trt\\_cp & f1b4 & 10.000 & 10.00000000 & uM & 10 uM & 24 h & 24 & h & HA1E & ⋯ & CRCGN001\\_HA1E\\_24H:BRD-K88145757-001-01-6:10 & trt\\_cp & HA1E & H15\\textbar{}I13 & CRCGN001\\_HA1E\\_24H\\_X1\\_F1B4\\_DUO52HI53LO\\textbar{}CRCGN001\\_HA1E\\_24H\\_X3\\_F1B4\\_DUO52HI53LO & CRCGN001\\_HA1E\\_24H\\_X1\\_F1B4\\_DUO52HI53LO:H15\\textbar{}CRCGN001\\_HA1E\\_24H\\_X3\\_F1B4\\_DUO52HI53LO:I13 & NA & CRCGN & tributyltin & 1\\\\\n", "\t triphenyl-tin\\_\\_HA1E\\_\\_trt\\_cp & f1b7 & 10.000 & 10.00000000 & uM & 10 uM & 24 h & 24 & h & HA1E & ⋯ & CRCGN004\\_HA1E\\_24H:BRD-K78683072-001-01-6:10 & trt\\_cp & HA1E & D19\\textbar{}F18\\textbar{}G07 & CRCGN004\\_HA1E\\_24H\\_X6\\_F1B7\\_DUO52HI53LO\\textbar{}CRCGN004\\_HA1E\\_24H\\_X7\\_F1B7\\_DUO52HI53LO\\textbar{}CRCGN004\\_HA1E\\_24H\\_X8\\_F1B7\\_DUO52HI53LO & CRCGN004\\_HA1E\\_24H\\_X6\\_F1B7\\_DUO52HI53LO:D19\\textbar{}CRCGN004\\_HA1E\\_24H\\_X6\\_F1B7\\_DUO52HI53LO:F18\\textbar{}CRCGN004\\_HA1E\\_24H\\_X6\\_F1B7\\_DUO52HI53LO:G07\\textbar{}CRCGN004\\_HA1E\\_24H\\_X7\\_F1B7\\_DUO52HI53LO:D19\\textbar{}CRCGN004\\_HA1E\\_24H\\_X7\\_F1B7\\_DUO52HI53LO:F18\\textbar{}CRCGN004\\_HA1E\\_24H\\_X7\\_F1B7\\_DUO52HI53LO:G07\\textbar{}CRCGN004\\_HA1E\\_24H\\_X8\\_F1B7\\_DUO52HI53LO:D19\\textbar{}CRCGN004\\_HA1E\\_24H\\_X8\\_F1B7\\_DUO52HI53LO:F18\\textbar{}CRCGN004\\_HA1E\\_24H\\_X8\\_F1B7\\_DUO52HI53LO:G07 & NA & CRCGN & triphenyl-tin & 0\\\\\n", "\t triphenyl-tin\\_\\_HA1E\\_\\_trt\\_cp & f1b7 & 10.000 & 10.00000000 & uM & 10 uM & 24 h & 24 & h & HA1E & ⋯ & CRCGN004\\_HA1E\\_24H:BRD-K78683072-001-01-6:10UM & trt\\_cp & HA1E & D19\\textbar{}F18\\textbar{}G07 & CRCGN004\\_HA1E\\_24H\\_X6\\_F1B7\\_DUO52HI53LO\\textbar{}CRCGN004\\_HA1E\\_24H\\_X7\\_F1B7\\_DUO52HI53LO\\textbar{}CRCGN004\\_HA1E\\_24H\\_X8\\_F1B7\\_DUO52HI53LO & CRCGN004\\_HA1E\\_24H\\_X6\\_F1B7\\_DUO52HI53LO:D19\\textbar{}CRCGN004\\_HA1E\\_24H\\_X6\\_F1B7\\_DUO52HI53LO:F18\\textbar{}CRCGN004\\_HA1E\\_24H\\_X6\\_F1B7\\_DUO52HI53LO:G07\\textbar{}CRCGN004\\_HA1E\\_24H\\_X7\\_F1B7\\_DUO52HI53LO:D19\\textbar{}CRCGN004\\_HA1E\\_24H\\_X7\\_F1B7\\_DUO52HI53LO:F18\\textbar{}CRCGN004\\_HA1E\\_24H\\_X7\\_F1B7\\_DUO52HI53LO:G07\\textbar{}CRCGN004\\_HA1E\\_24H\\_X8\\_F1B7\\_DUO52HI53LO:D19\\textbar{}CRCGN004\\_HA1E\\_24H\\_X8\\_F1B7\\_DUO52HI53LO:F18\\textbar{}CRCGN004\\_HA1E\\_24H\\_X8\\_F1B7\\_DUO52HI53LO:G07 & NA & CRCGN & triphenyl-tin & 0\\\\\n", "\t triphenyl-tin\\_\\_HA1E\\_\\_trt\\_cp & f1b4 & 10.000 & 10.00000000 & uM & 10 uM & 6 h & 6 & h & HA1E & ⋯ & CRCGN001\\_HA1E\\_6H:BRD-K78683072-001-01-6:10 & trt\\_cp & HA1E & D19\\textbar{}F18\\textbar{}G07 & CRCGN001\\_HA1E\\_6H\\_X1\\_F1B4\\_DUO52HI53LO\\textbar{}CRCGN001\\_HA1E\\_6H\\_X2\\_F1B4\\_DUO52HI53LO\\textbar{}CRCGN001\\_HA1E\\_6H\\_X3\\_F1B4\\_DUO52HI53LO & CRCGN001\\_HA1E\\_6H\\_X1\\_F1B4\\_DUO52HI53LO:D19\\textbar{}CRCGN001\\_HA1E\\_6H\\_X1\\_F1B4\\_DUO52HI53LO:F18\\textbar{}CRCGN001\\_HA1E\\_6H\\_X1\\_F1B4\\_DUO52HI53LO:G07\\textbar{}CRCGN001\\_HA1E\\_6H\\_X2\\_F1B4\\_DUO52HI53LO:D19\\textbar{}CRCGN001\\_HA1E\\_6H\\_X2\\_F1B4\\_DUO52HI53LO:F18\\textbar{}CRCGN001\\_HA1E\\_6H\\_X2\\_F1B4\\_DUO52HI53LO:G07\\textbar{}CRCGN001\\_HA1E\\_6H\\_X3\\_F1B4\\_DUO52HI53LO:D19\\textbar{}CRCGN001\\_HA1E\\_6H\\_X3\\_F1B4\\_DUO52HI53LO:F18\\textbar{}CRCGN001\\_HA1E\\_6H\\_X3\\_F1B4\\_DUO52HI53LO:G07 & NA & CRCGN & triphenyl-tin & 0\\\\\n", "\t triphenyl-tin\\_\\_HA1E\\_\\_trt\\_cp & f1b4 & 10.000 & 10.00000000 & uM & 10 uM & 24 h & 24 & h & HA1E & ⋯ & CRCGN001\\_HA1E\\_24H:BRD-K78683072-001-01-6:10 & trt\\_cp & HA1E & D14\\textbar{}D19\\textbar{}F18\\textbar{}G07\\textbar{}K11 & CRCGN001\\_HA1E\\_24H\\_X1\\_F1B4\\_DUO52HI53LO\\textbar{}CRCGN001\\_HA1E\\_24H\\_X2\\_F1B4\\_DUO52HI53LO\\textbar{}CRCGN001\\_HA1E\\_24H\\_X3\\_F1B4\\_DUO52HI53LO & CRCGN001\\_HA1E\\_24H\\_X1\\_F1B4\\_DUO52HI53LO:D14\\textbar{}CRCGN001\\_HA1E\\_24H\\_X1\\_F1B4\\_DUO52HI53LO:D19\\textbar{}CRCGN001\\_HA1E\\_24H\\_X1\\_F1B4\\_DUO52HI53LO:F18\\textbar{}CRCGN001\\_HA1E\\_24H\\_X1\\_F1B4\\_DUO52HI53LO:G07\\textbar{}CRCGN001\\_HA1E\\_24H\\_X2\\_F1B4\\_DUO52HI53LO:D19\\textbar{}CRCGN001\\_HA1E\\_24H\\_X2\\_F1B4\\_DUO52HI53LO:F18\\textbar{}CRCGN001\\_HA1E\\_24H\\_X2\\_F1B4\\_DUO52HI53LO:G07\\textbar{}CRCGN001\\_HA1E\\_24H\\_X2\\_F1B4\\_DUO52HI53LO:K11\\textbar{}CRCGN001\\_HA1E\\_24H\\_X3\\_F1B4\\_DUO52HI53LO:D14\\textbar{}CRCGN001\\_HA1E\\_24H\\_X3\\_F1B4\\_DUO52HI53LO:D19\\textbar{}CRCGN001\\_HA1E\\_24H\\_X3\\_F1B4\\_DUO52HI53LO:F18\\textbar{}CRCGN001\\_HA1E\\_24H\\_X3\\_F1B4\\_DUO52HI53LO:G07 & NA & CRCGN & triphenyl-tin & 0\\\\\n", "\\end{tabular}\n" ], "text/markdown": [ "\n", "A data.frame: 52 × 36\n", "\n", "| .id <chr> | bead_batch <chr> | nearest_dose <dbl> | pert_dose <dbl> | pert_dose_unit <chr> | pert_idose <chr> | pert_itime <chr> | pert_time <dbl> | pert_time_unit <chr> | cell_mfc_name <chr> | ⋯ ⋯ | sig_id <chr> | pert_type <chr> | cell_iname <chr> | det_wells <chr> | det_plates <chr> | distil_ids <chr> | build_name <lgl> | project_code <chr> | cmap_name <chr> | is_ncs_exemplar <int> |\n", "|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|\n", "| aminomethyltransferase__HA1E__trt_cp | b3 | 10.000 | 10.00000000 | uM | 10 uM | 24 h | 24 | h | HA1E | ⋯ | CPC001_HA1E_24H:BRD-A28318179-003-03-6:10 | trt_cp | HA1E | J07 | CPC001_HA1E_24H_X1_B3_DUO52HI53LO|CPC001_HA1E_24H_X2_B3_DUO52HI53LO|CPC001_HA1E_24H_X3_B3_DUO52HI53LO | CPC001_HA1E_24H_X1_B3_DUO52HI53LO:J07|CPC001_HA1E_24H_X2_B3_DUO52HI53LO:J07|CPC001_HA1E_24H_X3_B3_DUO52HI53LO:J07 | NA | CPC | aminomethyltransferase | 0 |\n", "| aminomethyltransferase__HA1E__trt_cp | b3 | 10.000 | 10.00000000 | uM | 10 uM | 6 h | 6 | h | HA1E | ⋯ | CPC001_HA1E_6H:BRD-A28318179-003-03-6:10 | trt_cp | HA1E | J07 | CPC001_HA1E_6H_X1_B3_DUO52HI53LO|CPC001_HA1E_6H_X2_B3_DUO52HI53LO|CPC001_HA1E_6H_X3_B3_DUO52HI53LO | CPC001_HA1E_6H_X1_B3_DUO52HI53LO:J07|CPC001_HA1E_6H_X2_B3_DUO52HI53LO:J07|CPC001_HA1E_6H_X3_B3_DUO52HI53LO:J07 | NA | CPC | aminomethyltransferase | 1 |\n", "| anagrelide__HA1E__trt_cp | b3 | 10.000 | 10.00000000 | uM | 10 uM | 6 h | 6 | h | HA1E | ⋯ | CPC004_HA1E_6H:BRD-K62200014-003-05-5:10 | trt_cp | HA1E | L03 | CPC004_HA1E_6H_X1_B3_DUO52HI53LO|CPC004_HA1E_6H_X2_B3_DUO52HI53LO|CPC004_HA1E_6H_X3_B3_DUO52HI53LO | CPC004_HA1E_6H_X1_B3_DUO52HI53LO:L03|CPC004_HA1E_6H_X2_B3_DUO52HI53LO:L03|CPC004_HA1E_6H_X3_B3_DUO52HI53LO:L03 | NA | CPC | anagrelide | 0 |\n", "| anagrelide__HA1E__trt_cp | f1b3 | 10.000 | 10.00000000 | uM | 10 uM | 6 h | 6 | h | HA1E | ⋯ | CPC011_HA1E_6H:BRD-K62200014-003-07-1:10 | trt_cp | HA1E | H10 | CPC011_HA1E_6H_X1_F1B3_DUO52HI53LO|CPC011_HA1E_6H_X3_F1B3_DUO52HI53LO | CPC011_HA1E_6H_X1_F1B3_DUO52HI53LO:H10|CPC011_HA1E_6H_X3_F1B3_DUO52HI53LO:H10 | NA | CPC | anagrelide | 0 |\n", "| anagrelide__HA1E__trt_cp | b23 | 0.740 | 0.76923100 | uM | 0.74 uM | 24 h | 24 | h | HA1E | ⋯ | REP.B018_HA1E_24H:B14 | trt_cp | HA1E | B14 | REP.B018_HA1E_24H_X1_B23|REP.B018_HA1E_24H_X2_B23 | REP.B018_HA1E_24H_X1_B23:B14|REP.B018_HA1E_24H_X2_B23:B14 | NA | REP | anagrelide | 1 |\n", "| anagrelide__HA1E__trt_cp | b24 | 1.110 | 1.11111000 | uM | 1.11 uM | 24 h | 24 | h | HA1E | ⋯ | REP.A018_HA1E_24H:B15 | trt_cp | HA1E | B15 | REP.A018_HA1E_24H_X1_B24|REP.A018_HA1E_24H_X2_B23|REP.A018_HA1E_24H_X3_B23 | REP.A018_HA1E_24H_X1_B24:B15|REP.A018_HA1E_24H_X2_B23:B15|REP.A018_HA1E_24H_X3_B23:B15 | NA | REP | anagrelide | 0 |\n", "| anagrelide__HA1E__trt_cp | b24 | 0.040 | 0.04115230 | uM | 0.04 uM | 24 h | 24 | h | HA1E | ⋯ | REP.A018_HA1E_24H:B18 | trt_cp | HA1E | B18 | REP.A018_HA1E_24H_X1_B24|REP.A018_HA1E_24H_X2_B23|REP.A018_HA1E_24H_X3_B23 | REP.A018_HA1E_24H_X1_B24:B18|REP.A018_HA1E_24H_X2_B23:B18|REP.A018_HA1E_24H_X3_B23:B18 | NA | REP | anagrelide | 0 |\n", "| anagrelide__HA1E__trt_cp | b23 | 0.080 | 0.08547010 | uM | 0.08 uM | 24 h | 24 | h | HA1E | ⋯ | REP.B018_HA1E_24H:B16 | trt_cp | HA1E | B16 | REP.B018_HA1E_24H_X1_B23|REP.B018_HA1E_24H_X2_B23 | REP.B018_HA1E_24H_X1_B23:B16|REP.B018_HA1E_24H_X2_B23:B16 | NA | REP | anagrelide | 0 |\n", "| anagrelide__HA1E__trt_cp | b24 | 10.000 | 10.00000000 | uM | 10 uM | 24 h | 24 | h | HA1E | ⋯ | REP.A018_HA1E_24H:B13 | trt_cp | HA1E | B13 | REP.A018_HA1E_24H_X1_B24|REP.A018_HA1E_24H_X2_B23|REP.A018_HA1E_24H_X3_B23 | REP.A018_HA1E_24H_X1_B24:B13|REP.A018_HA1E_24H_X2_B23:B13|REP.A018_HA1E_24H_X3_B23:B13 | NA | REP | anagrelide | 0 |\n", "| anagrelide__HA1E__trt_cp | b23 | 0.250 | 0.25641000 | uM | 0.25 uM | 24 h | 24 | h | HA1E | ⋯ | REP.B018_HA1E_24H:B15 | trt_cp | HA1E | B15 | REP.B018_HA1E_24H_X1_B23|REP.B018_HA1E_24H_X2_B23 | REP.B018_HA1E_24H_X1_B23:B15|REP.B018_HA1E_24H_X2_B23:B15 | NA | REP | anagrelide | 0 |\n", "| anagrelide__HA1E__trt_cp | b24 | 0.125 | 0.12345700 | uM | 0.125 uM | 24 h | 24 | h | HA1E | ⋯ | REP.A018_HA1E_24H:B17 | trt_cp | HA1E | B17 | REP.A018_HA1E_24H_X1_B24|REP.A018_HA1E_24H_X2_B23|REP.A018_HA1E_24H_X3_B23 | REP.A018_HA1E_24H_X1_B24:B17|REP.A018_HA1E_24H_X2_B23:B17|REP.A018_HA1E_24H_X3_B23:B17 | NA | REP | anagrelide | 0 |\n", "| anagrelide__HA1E__trt_cp | b23 | 0.010 | 0.00949668 | uM | 0.01 uM | 24 h | 24 | h | HA1E | ⋯ | REP.B018_HA1E_24H:B18 | trt_cp | HA1E | B18 | REP.B018_HA1E_24H_X1_B23|REP.B018_HA1E_24H_X2_B23 | REP.B018_HA1E_24H_X1_B23:B18|REP.B018_HA1E_24H_X2_B23:B18 | NA | REP | anagrelide | 0 |\n", "| anagrelide__HA1E__trt_cp | b24 | 0.370 | 0.37037000 | uM | 0.37 uM | 24 h | 24 | h | HA1E | ⋯ | REP.A018_HA1E_24H:B16 | trt_cp | HA1E | B16 | REP.A018_HA1E_24H_X1_B24|REP.A018_HA1E_24H_X2_B23|REP.A018_HA1E_24H_X3_B23 | REP.A018_HA1E_24H_X1_B24:B16|REP.A018_HA1E_24H_X2_B23:B16|REP.A018_HA1E_24H_X3_B23:B16 | NA | REP | anagrelide | 0 |\n", "| anagrelide__HA1E__trt_cp | b24 | 3.330 | 3.33333000 | uM | 3.33 uM | 24 h | 24 | h | HA1E | ⋯ | REP.A018_HA1E_24H:B14 | trt_cp | HA1E | B14 | REP.A018_HA1E_24H_X1_B24|REP.A018_HA1E_24H_X2_B23|REP.A018_HA1E_24H_X3_B23 | REP.A018_HA1E_24H_X1_B24:B14|REP.A018_HA1E_24H_X2_B23:B14|REP.A018_HA1E_24H_X3_B23:B14 | NA | REP | anagrelide | 0 |\n", "| anagrelide__HA1E__trt_cp | b23 | 2.220 | 2.30769000 | uM | 2.22 uM | 24 h | 24 | h | HA1E | ⋯ | REP.B018_HA1E_24H:B13 | trt_cp | HA1E | B13 | REP.B018_HA1E_24H_X1_B23|REP.B018_HA1E_24H_X2_B23 | REP.B018_HA1E_24H_X1_B23:B13|REP.B018_HA1E_24H_X2_B23:B13 | NA | REP | anagrelide | 0 |\n", "| anagrelide__HA1E__trt_cp | b23 | 0.030 | 0.02849000 | uM | 0.03 uM | 24 h | 24 | h | HA1E | ⋯ | REP.B018_HA1E_24H:B17 | trt_cp | HA1E | B17 | REP.B018_HA1E_24H_X1_B23|REP.B018_HA1E_24H_X2_B23 | REP.B018_HA1E_24H_X1_B23:B17|REP.B018_HA1E_24H_X2_B23:B17 | NA | REP | anagrelide | 0 |\n", "| ARP-101__HA1E__trt_cp | b3 | 10.000 | 10.00000000 | uM | 10 uM | 6 h | 6 | h | HA1E | ⋯ | CPC006_HA1E_6H:BRD-K73395020-001-01-5:10 | trt_cp | HA1E | K04 | CPC006_HA1E_6H_X1_B3_DUO52HI53LO|CPC006_HA1E_6H_X2_B3_DUO52HI53LO|CPC006_HA1E_6H_X3_B3_DUO52HI53LO|CPC006_HA1E_6H_X4_B4_DUO52HI53LO|CPC006_HA1E_6H_X5_B4_DUO52HI53LO | CPC006_HA1E_6H_X1_B3_DUO52HI53LO:K04|CPC006_HA1E_6H_X2_B3_DUO52HI53LO:K04|CPC006_HA1E_6H_X3_B3_DUO52HI53LO:K04|CPC006_HA1E_6H_X4_B4_DUO52HI53LO:K04|CPC006_HA1E_6H_X5_B4_DUO52HI53LO:K04 | NA | CPC | ARP-101 | 0 |\n", "| ARP-101__HA1E__trt_cp | b24 | 0.030 | 0.02849000 | uM | 0.03 uM | 24 h | 24 | h | HA1E | ⋯ | REP.B007_HA1E_24H:M17 | trt_cp | HA1E | M17 | REP.B007_HA1E_24H_X1_B24 | REP.B007_HA1E_24H_X1_B24:M17 | NA | REP | ARP-101 | 0 |\n", "| ARP-101__HA1E__trt_cp | b22 | 0.040 | 0.04115230 | uM | 0.04 uM | 24 h | 24 | h | HA1E | ⋯ | REP.A007_HA1E_24H:M18 | trt_cp | HA1E | M18 | REP.A007_HA1E_24H_X1_B22|REP.A007_HA1E_24H_X2_B24|REP.A007_HA1E_24H_X3_B22 | REP.A007_HA1E_24H_X1_B22:M18|REP.A007_HA1E_24H_X2_B24:M18|REP.A007_HA1E_24H_X3_B22:M18 | NA | REP | ARP-101 | 0 |\n", "| ARP-101__HA1E__trt_cp | b24 | 0.250 | 0.25641000 | uM | 0.25 uM | 24 h | 24 | h | HA1E | ⋯ | REP.B007_HA1E_24H:M15 | trt_cp | HA1E | M15 | REP.B007_HA1E_24H_X1_B24 | REP.B007_HA1E_24H_X1_B24:M15 | NA | REP | ARP-101 | 0 |\n", "| ARP-101__HA1E__trt_cp | b22 | 0.125 | 0.12345700 | uM | 0.125 uM | 24 h | 24 | h | HA1E | ⋯ | REP.A007_HA1E_24H:M17 | trt_cp | HA1E | M17 | REP.A007_HA1E_24H_X1_B22|REP.A007_HA1E_24H_X2_B24|REP.A007_HA1E_24H_X3_B22 | REP.A007_HA1E_24H_X1_B22:M17|REP.A007_HA1E_24H_X2_B24:M17|REP.A007_HA1E_24H_X3_B22:M17 | NA | REP | ARP-101 | 0 |\n", "| ARP-101__HA1E__trt_cp | b24 | 2.220 | 2.30769000 | uM | 2.22 uM | 24 h | 24 | h | HA1E | ⋯ | REP.B007_HA1E_24H:M13 | trt_cp | HA1E | M13 | REP.B007_HA1E_24H_X1_B24 | REP.B007_HA1E_24H_X1_B24:M13 | NA | REP | ARP-101 | 0 |\n", "| ARP-101__HA1E__trt_cp | b24 | 0.010 | 0.00949668 | uM | 0.01 uM | 24 h | 24 | h | HA1E | ⋯ | REP.B007_HA1E_24H:M18 | trt_cp | HA1E | M18 | REP.B007_HA1E_24H_X1_B24 | REP.B007_HA1E_24H_X1_B24:M18 | NA | REP | ARP-101 | 0 |\n", "| ARP-101__HA1E__trt_cp | b24 | 0.080 | 0.08547010 | uM | 0.08 uM | 24 h | 24 | h | HA1E | ⋯ | REP.B007_HA1E_24H:M16 | trt_cp | HA1E | M16 | REP.B007_HA1E_24H_X1_B24 | REP.B007_HA1E_24H_X1_B24:M16 | NA | REP | ARP-101 | 0 |\n", "| ARP-101__HA1E__trt_cp | b22 | 10.000 | 10.00000000 | uM | 10 uM | 24 h | 24 | h | HA1E | ⋯ | REP.A007_HA1E_24H:M13 | trt_cp | HA1E | M13 | REP.A007_HA1E_24H_X1_B22|REP.A007_HA1E_24H_X2_B24|REP.A007_HA1E_24H_X3_B22 | REP.A007_HA1E_24H_X1_B22:M13|REP.A007_HA1E_24H_X2_B24:M13|REP.A007_HA1E_24H_X3_B22:M13 | NA | REP | ARP-101 | 0 |\n", "| ARP-101__HA1E__trt_cp | b22 | 0.370 | 0.37037000 | uM | 0.37 uM | 24 h | 24 | h | HA1E | ⋯ | REP.A007_HA1E_24H:M16 | trt_cp | HA1E | M16 | REP.A007_HA1E_24H_X1_B22|REP.A007_HA1E_24H_X3_B22 | REP.A007_HA1E_24H_X1_B22:M16|REP.A007_HA1E_24H_X3_B22:M16 | NA | REP | ARP-101 | 0 |\n", "| ARP-101__HA1E__trt_cp | b22 | 1.110 | 1.11111000 | uM | 1.11 uM | 24 h | 24 | h | HA1E | ⋯ | REP.A007_HA1E_24H:M15 | trt_cp | HA1E | M15 | REP.A007_HA1E_24H_X1_B22|REP.A007_HA1E_24H_X2_B24|REP.A007_HA1E_24H_X3_B22 | REP.A007_HA1E_24H_X1_B22:M15|REP.A007_HA1E_24H_X2_B24:M15|REP.A007_HA1E_24H_X3_B22:M15 | NA | REP | ARP-101 | 0 |\n", "| ARP-101__HA1E__trt_cp | b22 | 3.330 | 3.33333000 | uM | 3.33 uM | 24 h | 24 | h | HA1E | ⋯ | REP.A007_HA1E_24H:M14 | trt_cp | HA1E | M14 | REP.A007_HA1E_24H_X1_B22|REP.A007_HA1E_24H_X2_B24|REP.A007_HA1E_24H_X3_B22 | REP.A007_HA1E_24H_X1_B22:M14|REP.A007_HA1E_24H_X2_B24:M14|REP.A007_HA1E_24H_X3_B22:M14 | NA | REP | ARP-101 | 1 |\n", "| ARP-101__HA1E__trt_cp | b24 | 0.740 | 0.76923100 | uM | 0.74 uM | 24 h | 24 | h | HA1E | ⋯ | REP.B007_HA1E_24H:M14 | trt_cp | HA1E | M14 | REP.B007_HA1E_24H_X1_B24 | REP.B007_HA1E_24H_X1_B24:M14 | NA | REP | ARP-101 | 0 |\n", "| AVA__HA1E__trt_cp | b13 | 3.330 | 3.33000000 | uM | 3.33 uM | 24 h | 24 | h | HA1E | ⋯ | PCLB003_HA1E_24H:BRD-K10466330-001-01-5:3.33 | trt_cp | HA1E | N20 | PCLB003_HA1E_24H_X1_B13|PCLB003_HA1E_24H_X2_B13|PCLB003_HA1E_24H_X3_B13 | PCLB003_HA1E_24H_X1_B13:N20|PCLB003_HA1E_24H_X2_B13:N20|PCLB003_HA1E_24H_X3_B13:N20 | NA | PCLB | AVA | 0 |\n", "| AVA__HA1E__trt_cp | b13 | 0.370 | 0.37000000 | uM | 0.37 uM | 24 h | 24 | h | HA1E | ⋯ | PCLB003_HA1E_24H:BRD-K10466330-001-01-5:0.37 | trt_cp | HA1E | N22 | PCLB003_HA1E_24H_X1_B13|PCLB003_HA1E_24H_X2_B13|PCLB003_HA1E_24H_X3_B13 | PCLB003_HA1E_24H_X1_B13:N22|PCLB003_HA1E_24H_X2_B13:N22|PCLB003_HA1E_24H_X3_B13:N22 | NA | PCLB | AVA | 0 |\n", "| AVA__HA1E__trt_cp | b13 | 1.110 | 1.11000000 | uM | 1.11 uM | 24 h | 24 | h | HA1E | ⋯ | PCLB003_HA1E_24H:BRD-K10466330-001-01-5:1.11 | trt_cp | HA1E | N21 | PCLB003_HA1E_24H_X1_B13|PCLB003_HA1E_24H_X2_B13|PCLB003_HA1E_24H_X3_B13 | PCLB003_HA1E_24H_X1_B13:N21|PCLB003_HA1E_24H_X2_B13:N21|PCLB003_HA1E_24H_X3_B13:N21 | NA | PCLB | AVA | 0 |\n", "| AVA__HA1E__trt_cp | b13 | 0.040 | 0.04000000 | uM | 0.04 uM | 24 h | 24 | h | HA1E | ⋯ | PCLB003_HA1E_24H:BRD-K10466330-001-01-5:0.04 | trt_cp | HA1E | N24 | PCLB003_HA1E_24H_X1_B13|PCLB003_HA1E_24H_X2_B13|PCLB003_HA1E_24H_X3_B13 | PCLB003_HA1E_24H_X1_B13:N24|PCLB003_HA1E_24H_X2_B13:N24|PCLB003_HA1E_24H_X3_B13:N24 | NA | PCLB | AVA | 0 |\n", "| AVA__HA1E__trt_cp | b13 | 10.000 | 10.00000000 | uM | 10 uM | 24 h | 24 | h | HA1E | ⋯ | PCLB003_HA1E_24H:BRD-K10466330-001-01-5:10 | trt_cp | HA1E | N19 | PCLB003_HA1E_24H_X1_B13|PCLB003_HA1E_24H_X2_B13|PCLB003_HA1E_24H_X3_B13 | PCLB003_HA1E_24H_X1_B13:N19|PCLB003_HA1E_24H_X2_B13:N19|PCLB003_HA1E_24H_X3_B13:N19 | NA | PCLB | AVA | 1 |\n", "| AVA__HA1E__trt_cp | b13 | 0.120 | 0.12000000 | uM | 0.12 uM | 24 h | 24 | h | HA1E | ⋯ | PCLB003_HA1E_24H:BRD-K10466330-001-01-5:0.12 | trt_cp | HA1E | N23 | PCLB003_HA1E_24H_X1_B13|PCLB003_HA1E_24H_X2_B13|PCLB003_HA1E_24H_X3_B13 | PCLB003_HA1E_24H_X1_B13:N23|PCLB003_HA1E_24H_X2_B13:N23|PCLB003_HA1E_24H_X3_B13:N23 | NA | PCLB | AVA | 0 |\n", "| BRD-K05402890__HA1E__trt_cp | f1b3 | 0.370 | 0.35000000 | uM | 0.37 uM | 24 h | 24 | h | HA1E | ⋯ | CPC006_HA1E_24H:N13 | trt_cp | HA1E | N13 | CPC006_HA1E_24H_X1.A2_F1B3_DUO52HI53LO|CPC006_HA1E_24H_X2_B3_DUO52HI53LO|CPC006_HA1E_24H_X3_B3_DUO52HI53LO | CPC006_HA1E_24H_X1.A2_F1B3_DUO52HI53LO:N13|CPC006_HA1E_24H_X2_B3_DUO52HI53LO:N13|CPC006_HA1E_24H_X3_B3_DUO52HI53LO:N13 | NA | CPC | BRD-K05402890 | 0 |\n", "| BRD-K05402890__HA1E__trt_cp | b3 | 10.000 | 10.00000000 | uM | 10 uM | 24 h | 24 | h | HA1E | ⋯ | CPC007_HA1E_24H:BRD-K05402890-001-09-2:10 | trt_cp | HA1E | H03 | CPC007_HA1E_24H_X1_B3_DUO52HI53LO|CPC007_HA1E_24H_X2_B3_DUO52HI53LO|CPC007_HA1E_24H_X3_B3_DUO52HI53LO | CPC007_HA1E_24H_X1_B3_DUO52HI53LO:H03|CPC007_HA1E_24H_X2_B3_DUO52HI53LO:H03|CPC007_HA1E_24H_X3_B3_DUO52HI53LO:H03 | NA | CPC | BRD-K05402890 | 1 |\n", "| BRD-K05402890__HA1E__trt_cp | b3 | 10.000 | 10.00000000 | uM | 10 uM | 6 h | 6 | h | HA1E | ⋯ | CPC007_HA1E_6H:BRD-K05402890-001-09-2:10 | trt_cp | HA1E | H03 | CPC007_HA1E_6H_X1_B3_DUO52HI53LO|CPC007_HA1E_6H_X2_B3_DUO52HI53LO|CPC007_HA1E_6H_X3_B3_DUO52HI53LO | CPC007_HA1E_6H_X1_B3_DUO52HI53LO:H03|CPC007_HA1E_6H_X2_B3_DUO52HI53LO:H03|CPC007_HA1E_6H_X3_B3_DUO52HI53LO:H03 | NA | CPC | BRD-K05402890 | 0 |\n", "| BRD-K05402890__HA1E__trt_cp | b21 | 0.370 | 0.37037000 | uM | 0.37 uM | 24 h | 24 | h | HA1E | ⋯ | PBIOA014_HA1E_24H:L04 | trt_cp | HA1E | L04 | PBIOA014_HA1E_24H_X2_B21|PBIOA014_HA1E_24H_X3_B21 | PBIOA014_HA1E_24H_X2_B21:L04|PBIOA014_HA1E_24H_X3_B21:L04 | NA | PBIOA | BRD-K05402890 | 0 |\n", "| BRD-K05402890__HA1E__trt_cp | b21 | 0.125 | 0.12345700 | uM | 0.125 uM | 24 h | 24 | h | HA1E | ⋯ | PBIOA014_HA1E_24H:L05 | trt_cp | HA1E | L05 | PBIOA014_HA1E_24H_X1_B21|PBIOA014_HA1E_24H_X2_B21|PBIOA014_HA1E_24H_X3_B21 | PBIOA014_HA1E_24H_X1_B21:L05|PBIOA014_HA1E_24H_X2_B21:L05|PBIOA014_HA1E_24H_X3_B21:L05 | NA | PBIOA | BRD-K05402890 | 0 |\n", "| BRD-K05402890__HA1E__trt_cp | b21 | 3.330 | 3.33333000 | uM | 3.33 uM | 24 h | 24 | h | HA1E | ⋯ | PBIOA014_HA1E_24H:L02 | trt_cp | HA1E | L02 | PBIOA014_HA1E_24H_X1_B21|PBIOA014_HA1E_24H_X2_B21|PBIOA014_HA1E_24H_X3_B21 | PBIOA014_HA1E_24H_X1_B21:L02|PBIOA014_HA1E_24H_X2_B21:L02|PBIOA014_HA1E_24H_X3_B21:L02 | NA | PBIOA | BRD-K05402890 | 0 |\n", "| BRD-K05402890__HA1E__trt_cp | b21 | 1.110 | 1.11111000 | uM | 1.11 uM | 24 h | 24 | h | HA1E | ⋯ | PBIOA014_HA1E_24H:L03 | trt_cp | HA1E | L03 | PBIOA014_HA1E_24H_X1_B21|PBIOA014_HA1E_24H_X2_B21|PBIOA014_HA1E_24H_X3_B21 | PBIOA014_HA1E_24H_X1_B21:L03|PBIOA014_HA1E_24H_X2_B21:L03|PBIOA014_HA1E_24H_X3_B21:L03 | NA | PBIOA | BRD-K05402890 | 0 |\n", "| BRD-K05402890__HA1E__trt_cp | b21 | 10.000 | 10.00000000 | uM | 10 uM | 24 h | 24 | h | HA1E | ⋯ | PBIOA014_HA1E_24H:L01 | trt_cp | HA1E | L01 | PBIOA014_HA1E_24H_X1_B21|PBIOA014_HA1E_24H_X2_B21|PBIOA014_HA1E_24H_X3_B21 | PBIOA014_HA1E_24H_X1_B21:L01|PBIOA014_HA1E_24H_X2_B21:L01|PBIOA014_HA1E_24H_X3_B21:L01 | NA | PBIOA | BRD-K05402890 | 0 |\n", "| BRD-K05402890__HA1E__trt_cp | b21 | 0.040 | 0.04115230 | uM | 0.04 uM | 24 h | 24 | h | HA1E | ⋯ | PBIOA014_HA1E_24H:L06 | trt_cp | HA1E | L06 | PBIOA014_HA1E_24H_X1_B21|PBIOA014_HA1E_24H_X2_B21|PBIOA014_HA1E_24H_X3_B21 | PBIOA014_HA1E_24H_X1_B21:L06|PBIOA014_HA1E_24H_X2_B21:L06|PBIOA014_HA1E_24H_X3_B21:L06 | NA | PBIOA | BRD-K05402890 | 0 |\n", "| R-59022__HA1E__trt_cp | b3 | 10.000 | 10.00000000 | uM | 10 uM | 6 h | 6 | h | HA1E | ⋯ | CPC005_HA1E_6H:BRD-K54665485-001-04-6:10 | trt_cp | HA1E | P15 | CPC005_HA1E_6H_X3_B3_DUO52HI53LO | CPC005_HA1E_6H_X3_B3_DUO52HI53LO:P15 | NA | CPC | R-59022 | 0 |\n", "| ST-638__HA1E__trt_cp | b3 | 10.000 | 10.00000000 | uM | 10 uM | 6 h | 6 | h | HA1E | ⋯ | CPC005_HA1E_6H:BRD-K51476772-001-01-9:10 | trt_cp | HA1E | D03 | CPC005_HA1E_6H_X1_B3_DUO52HI53LO|CPC005_HA1E_6H_X3_B3_DUO52HI53LO | CPC005_HA1E_6H_X1_B3_DUO52HI53LO:D03|CPC005_HA1E_6H_X3_B3_DUO52HI53LO:D03 | NA | CPC | ST-638 | 0 |\n", "| tributyltin__HA1E__trt_cp | f1b7 | 10.000 | 10.00000000 | uM | 10 uM | 6 h | 6 | h | HA1E | ⋯ | CRCGN004_HA1E_6H:BRD-K88145757-001-01-6:10 | trt_cp | HA1E | H15|I13|L18 | CRCGN004_HA1E_6H_X6_F1B7_DUO52HI53LO | CRCGN004_HA1E_6H_X6_F1B7_DUO52HI53LO:H15|CRCGN004_HA1E_6H_X6_F1B7_DUO52HI53LO:I13|CRCGN004_HA1E_6H_X6_F1B7_DUO52HI53LO:L18 | NA | CRCGN | tributyltin | 0 |\n", "| tributyltin__HA1E__trt_cp | f1b4 | 10.000 | 10.00000000 | uM | 10 uM | 24 h | 24 | h | HA1E | ⋯ | CRCGN001_HA1E_24H:BRD-K88145757-001-01-6:10 | trt_cp | HA1E | H15|I13 | CRCGN001_HA1E_24H_X1_F1B4_DUO52HI53LO|CRCGN001_HA1E_24H_X3_F1B4_DUO52HI53LO | CRCGN001_HA1E_24H_X1_F1B4_DUO52HI53LO:H15|CRCGN001_HA1E_24H_X3_F1B4_DUO52HI53LO:I13 | NA | CRCGN | tributyltin | 1 |\n", "| triphenyl-tin__HA1E__trt_cp | f1b7 | 10.000 | 10.00000000 | uM | 10 uM | 24 h | 24 | h | HA1E | ⋯ | CRCGN004_HA1E_24H:BRD-K78683072-001-01-6:10 | trt_cp | HA1E | D19|F18|G07 | CRCGN004_HA1E_24H_X6_F1B7_DUO52HI53LO|CRCGN004_HA1E_24H_X7_F1B7_DUO52HI53LO|CRCGN004_HA1E_24H_X8_F1B7_DUO52HI53LO | CRCGN004_HA1E_24H_X6_F1B7_DUO52HI53LO:D19|CRCGN004_HA1E_24H_X6_F1B7_DUO52HI53LO:F18|CRCGN004_HA1E_24H_X6_F1B7_DUO52HI53LO:G07|CRCGN004_HA1E_24H_X7_F1B7_DUO52HI53LO:D19|CRCGN004_HA1E_24H_X7_F1B7_DUO52HI53LO:F18|CRCGN004_HA1E_24H_X7_F1B7_DUO52HI53LO:G07|CRCGN004_HA1E_24H_X8_F1B7_DUO52HI53LO:D19|CRCGN004_HA1E_24H_X8_F1B7_DUO52HI53LO:F18|CRCGN004_HA1E_24H_X8_F1B7_DUO52HI53LO:G07 | NA | CRCGN | triphenyl-tin | 0 |\n", "| triphenyl-tin__HA1E__trt_cp | f1b7 | 10.000 | 10.00000000 | uM | 10 uM | 24 h | 24 | h | HA1E | ⋯ | CRCGN004_HA1E_24H:BRD-K78683072-001-01-6:10UM | trt_cp | HA1E | D19|F18|G07 | CRCGN004_HA1E_24H_X6_F1B7_DUO52HI53LO|CRCGN004_HA1E_24H_X7_F1B7_DUO52HI53LO|CRCGN004_HA1E_24H_X8_F1B7_DUO52HI53LO | CRCGN004_HA1E_24H_X6_F1B7_DUO52HI53LO:D19|CRCGN004_HA1E_24H_X6_F1B7_DUO52HI53LO:F18|CRCGN004_HA1E_24H_X6_F1B7_DUO52HI53LO:G07|CRCGN004_HA1E_24H_X7_F1B7_DUO52HI53LO:D19|CRCGN004_HA1E_24H_X7_F1B7_DUO52HI53LO:F18|CRCGN004_HA1E_24H_X7_F1B7_DUO52HI53LO:G07|CRCGN004_HA1E_24H_X8_F1B7_DUO52HI53LO:D19|CRCGN004_HA1E_24H_X8_F1B7_DUO52HI53LO:F18|CRCGN004_HA1E_24H_X8_F1B7_DUO52HI53LO:G07 | NA | CRCGN | triphenyl-tin | 0 |\n", "| triphenyl-tin__HA1E__trt_cp | f1b4 | 10.000 | 10.00000000 | uM | 10 uM | 6 h | 6 | h | HA1E | ⋯ | CRCGN001_HA1E_6H:BRD-K78683072-001-01-6:10 | trt_cp | HA1E | D19|F18|G07 | CRCGN001_HA1E_6H_X1_F1B4_DUO52HI53LO|CRCGN001_HA1E_6H_X2_F1B4_DUO52HI53LO|CRCGN001_HA1E_6H_X3_F1B4_DUO52HI53LO | CRCGN001_HA1E_6H_X1_F1B4_DUO52HI53LO:D19|CRCGN001_HA1E_6H_X1_F1B4_DUO52HI53LO:F18|CRCGN001_HA1E_6H_X1_F1B4_DUO52HI53LO:G07|CRCGN001_HA1E_6H_X2_F1B4_DUO52HI53LO:D19|CRCGN001_HA1E_6H_X2_F1B4_DUO52HI53LO:F18|CRCGN001_HA1E_6H_X2_F1B4_DUO52HI53LO:G07|CRCGN001_HA1E_6H_X3_F1B4_DUO52HI53LO:D19|CRCGN001_HA1E_6H_X3_F1B4_DUO52HI53LO:F18|CRCGN001_HA1E_6H_X3_F1B4_DUO52HI53LO:G07 | NA | CRCGN | triphenyl-tin | 0 |\n", "| triphenyl-tin__HA1E__trt_cp | f1b4 | 10.000 | 10.00000000 | uM | 10 uM | 24 h | 24 | h | HA1E | ⋯ | CRCGN001_HA1E_24H:BRD-K78683072-001-01-6:10 | trt_cp | HA1E | D14|D19|F18|G07|K11 | CRCGN001_HA1E_24H_X1_F1B4_DUO52HI53LO|CRCGN001_HA1E_24H_X2_F1B4_DUO52HI53LO|CRCGN001_HA1E_24H_X3_F1B4_DUO52HI53LO | CRCGN001_HA1E_24H_X1_F1B4_DUO52HI53LO:D14|CRCGN001_HA1E_24H_X1_F1B4_DUO52HI53LO:D19|CRCGN001_HA1E_24H_X1_F1B4_DUO52HI53LO:F18|CRCGN001_HA1E_24H_X1_F1B4_DUO52HI53LO:G07|CRCGN001_HA1E_24H_X2_F1B4_DUO52HI53LO:D19|CRCGN001_HA1E_24H_X2_F1B4_DUO52HI53LO:F18|CRCGN001_HA1E_24H_X2_F1B4_DUO52HI53LO:G07|CRCGN001_HA1E_24H_X2_F1B4_DUO52HI53LO:K11|CRCGN001_HA1E_24H_X3_F1B4_DUO52HI53LO:D14|CRCGN001_HA1E_24H_X3_F1B4_DUO52HI53LO:D19|CRCGN001_HA1E_24H_X3_F1B4_DUO52HI53LO:F18|CRCGN001_HA1E_24H_X3_F1B4_DUO52HI53LO:G07 | NA | CRCGN | triphenyl-tin | 0 |\n", "\n" ], "text/plain": [ " .id bead_batch nearest_dose pert_dose \n", "1 aminomethyltransferase__HA1E__trt_cp b3 10.000 10.00000000\n", "2 aminomethyltransferase__HA1E__trt_cp b3 10.000 10.00000000\n", "3 anagrelide__HA1E__trt_cp b3 10.000 10.00000000\n", "4 anagrelide__HA1E__trt_cp f1b3 10.000 10.00000000\n", "5 anagrelide__HA1E__trt_cp b23 0.740 0.76923100\n", "6 anagrelide__HA1E__trt_cp b24 1.110 1.11111000\n", "7 anagrelide__HA1E__trt_cp b24 0.040 0.04115230\n", "8 anagrelide__HA1E__trt_cp b23 0.080 0.08547010\n", "9 anagrelide__HA1E__trt_cp b24 10.000 10.00000000\n", "10 anagrelide__HA1E__trt_cp b23 0.250 0.25641000\n", "11 anagrelide__HA1E__trt_cp b24 0.125 0.12345700\n", "12 anagrelide__HA1E__trt_cp b23 0.010 0.00949668\n", "13 anagrelide__HA1E__trt_cp b24 0.370 0.37037000\n", "14 anagrelide__HA1E__trt_cp b24 3.330 3.33333000\n", "15 anagrelide__HA1E__trt_cp b23 2.220 2.30769000\n", "16 anagrelide__HA1E__trt_cp b23 0.030 0.02849000\n", "17 ARP-101__HA1E__trt_cp b3 10.000 10.00000000\n", "18 ARP-101__HA1E__trt_cp b24 0.030 0.02849000\n", "19 ARP-101__HA1E__trt_cp b22 0.040 0.04115230\n", "20 ARP-101__HA1E__trt_cp b24 0.250 0.25641000\n", "21 ARP-101__HA1E__trt_cp b22 0.125 0.12345700\n", "22 ARP-101__HA1E__trt_cp b24 2.220 2.30769000\n", "23 ARP-101__HA1E__trt_cp b24 0.010 0.00949668\n", "24 ARP-101__HA1E__trt_cp b24 0.080 0.08547010\n", "25 ARP-101__HA1E__trt_cp b22 10.000 10.00000000\n", "26 ARP-101__HA1E__trt_cp b22 0.370 0.37037000\n", "27 ARP-101__HA1E__trt_cp b22 1.110 1.11111000\n", "28 ARP-101__HA1E__trt_cp b22 3.330 3.33333000\n", "29 ARP-101__HA1E__trt_cp b24 0.740 0.76923100\n", "30 AVA__HA1E__trt_cp b13 3.330 3.33000000\n", "31 AVA__HA1E__trt_cp b13 0.370 0.37000000\n", "32 AVA__HA1E__trt_cp b13 1.110 1.11000000\n", "33 AVA__HA1E__trt_cp b13 0.040 0.04000000\n", "34 AVA__HA1E__trt_cp b13 10.000 10.00000000\n", "35 AVA__HA1E__trt_cp b13 0.120 0.12000000\n", "36 BRD-K05402890__HA1E__trt_cp f1b3 0.370 0.35000000\n", "37 BRD-K05402890__HA1E__trt_cp b3 10.000 10.00000000\n", "38 BRD-K05402890__HA1E__trt_cp b3 10.000 10.00000000\n", "39 BRD-K05402890__HA1E__trt_cp b21 0.370 0.37037000\n", "40 BRD-K05402890__HA1E__trt_cp b21 0.125 0.12345700\n", "41 BRD-K05402890__HA1E__trt_cp b21 3.330 3.33333000\n", "42 BRD-K05402890__HA1E__trt_cp b21 1.110 1.11111000\n", "43 BRD-K05402890__HA1E__trt_cp b21 10.000 10.00000000\n", "44 BRD-K05402890__HA1E__trt_cp b21 0.040 0.04115230\n", "45 R-59022__HA1E__trt_cp b3 10.000 10.00000000\n", "46 ST-638__HA1E__trt_cp b3 10.000 10.00000000\n", "47 tributyltin__HA1E__trt_cp f1b7 10.000 10.00000000\n", "48 tributyltin__HA1E__trt_cp f1b4 10.000 10.00000000\n", "49 triphenyl-tin__HA1E__trt_cp f1b7 10.000 10.00000000\n", "50 triphenyl-tin__HA1E__trt_cp f1b7 10.000 10.00000000\n", "51 triphenyl-tin__HA1E__trt_cp f1b4 10.000 10.00000000\n", "52 triphenyl-tin__HA1E__trt_cp f1b4 10.000 10.00000000\n", " pert_dose_unit pert_idose pert_itime pert_time pert_time_unit cell_mfc_name\n", "1 uM 10 uM 24 h 24 h HA1E \n", "2 uM 10 uM 6 h 6 h HA1E \n", "3 uM 10 uM 6 h 6 h HA1E \n", "4 uM 10 uM 6 h 6 h HA1E \n", "5 uM 0.74 uM 24 h 24 h HA1E \n", "6 uM 1.11 uM 24 h 24 h HA1E \n", "7 uM 0.04 uM 24 h 24 h HA1E \n", "8 uM 0.08 uM 24 h 24 h HA1E \n", "9 uM 10 uM 24 h 24 h HA1E \n", "10 uM 0.25 uM 24 h 24 h HA1E \n", "11 uM 0.125 uM 24 h 24 h HA1E \n", "12 uM 0.01 uM 24 h 24 h HA1E \n", "13 uM 0.37 uM 24 h 24 h HA1E \n", "14 uM 3.33 uM 24 h 24 h HA1E \n", "15 uM 2.22 uM 24 h 24 h HA1E \n", "16 uM 0.03 uM 24 h 24 h HA1E \n", "17 uM 10 uM 6 h 6 h HA1E \n", "18 uM 0.03 uM 24 h 24 h HA1E \n", "19 uM 0.04 uM 24 h 24 h HA1E \n", "20 uM 0.25 uM 24 h 24 h HA1E \n", "21 uM 0.125 uM 24 h 24 h HA1E \n", "22 uM 2.22 uM 24 h 24 h HA1E \n", "23 uM 0.01 uM 24 h 24 h HA1E \n", "24 uM 0.08 uM 24 h 24 h HA1E \n", "25 uM 10 uM 24 h 24 h HA1E \n", "26 uM 0.37 uM 24 h 24 h HA1E \n", "27 uM 1.11 uM 24 h 24 h HA1E \n", "28 uM 3.33 uM 24 h 24 h HA1E \n", "29 uM 0.74 uM 24 h 24 h HA1E \n", "30 uM 3.33 uM 24 h 24 h HA1E \n", "31 uM 0.37 uM 24 h 24 h HA1E \n", "32 uM 1.11 uM 24 h 24 h HA1E \n", "33 uM 0.04 uM 24 h 24 h HA1E \n", "34 uM 10 uM 24 h 24 h HA1E \n", "35 uM 0.12 uM 24 h 24 h HA1E \n", "36 uM 0.37 uM 24 h 24 h HA1E \n", "37 uM 10 uM 24 h 24 h HA1E \n", "38 uM 10 uM 6 h 6 h HA1E \n", "39 uM 0.37 uM 24 h 24 h HA1E \n", "40 uM 0.125 uM 24 h 24 h HA1E \n", "41 uM 3.33 uM 24 h 24 h HA1E \n", "42 uM 1.11 uM 24 h 24 h HA1E \n", "43 uM 10 uM 24 h 24 h HA1E \n", "44 uM 0.04 uM 24 h 24 h HA1E \n", "45 uM 10 uM 6 h 6 h HA1E \n", "46 uM 10 uM 6 h 6 h HA1E \n", "47 uM 10 uM 6 h 6 h HA1E \n", "48 uM 10 uM 24 h 24 h HA1E \n", "49 uM 10 uM 24 h 24 h HA1E \n", "50 uM 10 uM 24 h 24 h HA1E \n", "51 uM 10 uM 6 h 6 h HA1E \n", "52 uM 10 uM 24 h 24 h HA1E \n", " ⋯ sig_id pert_type cell_iname\n", "1 ⋯ CPC001_HA1E_24H:BRD-A28318179-003-03-6:10 trt_cp HA1E \n", "2 ⋯ CPC001_HA1E_6H:BRD-A28318179-003-03-6:10 trt_cp HA1E \n", "3 ⋯ CPC004_HA1E_6H:BRD-K62200014-003-05-5:10 trt_cp HA1E \n", "4 ⋯ CPC011_HA1E_6H:BRD-K62200014-003-07-1:10 trt_cp HA1E \n", "5 ⋯ REP.B018_HA1E_24H:B14 trt_cp HA1E \n", "6 ⋯ REP.A018_HA1E_24H:B15 trt_cp HA1E \n", "7 ⋯ REP.A018_HA1E_24H:B18 trt_cp HA1E \n", "8 ⋯ REP.B018_HA1E_24H:B16 trt_cp HA1E \n", "9 ⋯ REP.A018_HA1E_24H:B13 trt_cp HA1E \n", "10 ⋯ REP.B018_HA1E_24H:B15 trt_cp HA1E \n", "11 ⋯ REP.A018_HA1E_24H:B17 trt_cp HA1E \n", "12 ⋯ REP.B018_HA1E_24H:B18 trt_cp HA1E \n", "13 ⋯ REP.A018_HA1E_24H:B16 trt_cp HA1E \n", "14 ⋯ REP.A018_HA1E_24H:B14 trt_cp HA1E \n", "15 ⋯ REP.B018_HA1E_24H:B13 trt_cp HA1E \n", "16 ⋯ REP.B018_HA1E_24H:B17 trt_cp HA1E \n", "17 ⋯ CPC006_HA1E_6H:BRD-K73395020-001-01-5:10 trt_cp HA1E \n", "18 ⋯ REP.B007_HA1E_24H:M17 trt_cp HA1E \n", "19 ⋯ REP.A007_HA1E_24H:M18 trt_cp HA1E \n", "20 ⋯ REP.B007_HA1E_24H:M15 trt_cp HA1E \n", "21 ⋯ REP.A007_HA1E_24H:M17 trt_cp HA1E \n", "22 ⋯ REP.B007_HA1E_24H:M13 trt_cp HA1E \n", "23 ⋯ REP.B007_HA1E_24H:M18 trt_cp HA1E \n", "24 ⋯ REP.B007_HA1E_24H:M16 trt_cp HA1E \n", "25 ⋯ REP.A007_HA1E_24H:M13 trt_cp HA1E \n", "26 ⋯ REP.A007_HA1E_24H:M16 trt_cp HA1E \n", "27 ⋯ REP.A007_HA1E_24H:M15 trt_cp HA1E \n", "28 ⋯ REP.A007_HA1E_24H:M14 trt_cp HA1E \n", "29 ⋯ REP.B007_HA1E_24H:M14 trt_cp HA1E \n", "30 ⋯ PCLB003_HA1E_24H:BRD-K10466330-001-01-5:3.33 trt_cp HA1E \n", "31 ⋯ PCLB003_HA1E_24H:BRD-K10466330-001-01-5:0.37 trt_cp HA1E \n", "32 ⋯ PCLB003_HA1E_24H:BRD-K10466330-001-01-5:1.11 trt_cp HA1E \n", "33 ⋯ PCLB003_HA1E_24H:BRD-K10466330-001-01-5:0.04 trt_cp HA1E \n", "34 ⋯ PCLB003_HA1E_24H:BRD-K10466330-001-01-5:10 trt_cp HA1E \n", "35 ⋯ PCLB003_HA1E_24H:BRD-K10466330-001-01-5:0.12 trt_cp HA1E \n", "36 ⋯ CPC006_HA1E_24H:N13 trt_cp HA1E \n", "37 ⋯ CPC007_HA1E_24H:BRD-K05402890-001-09-2:10 trt_cp HA1E \n", "38 ⋯ CPC007_HA1E_6H:BRD-K05402890-001-09-2:10 trt_cp HA1E \n", "39 ⋯ PBIOA014_HA1E_24H:L04 trt_cp HA1E \n", "40 ⋯ PBIOA014_HA1E_24H:L05 trt_cp HA1E \n", "41 ⋯ PBIOA014_HA1E_24H:L02 trt_cp HA1E \n", "42 ⋯ PBIOA014_HA1E_24H:L03 trt_cp HA1E \n", "43 ⋯ PBIOA014_HA1E_24H:L01 trt_cp HA1E \n", "44 ⋯ PBIOA014_HA1E_24H:L06 trt_cp HA1E \n", "45 ⋯ CPC005_HA1E_6H:BRD-K54665485-001-04-6:10 trt_cp HA1E \n", "46 ⋯ CPC005_HA1E_6H:BRD-K51476772-001-01-9:10 trt_cp HA1E \n", "47 ⋯ CRCGN004_HA1E_6H:BRD-K88145757-001-01-6:10 trt_cp HA1E \n", "48 ⋯ CRCGN001_HA1E_24H:BRD-K88145757-001-01-6:10 trt_cp HA1E \n", "49 ⋯ CRCGN004_HA1E_24H:BRD-K78683072-001-01-6:10 trt_cp HA1E \n", "50 ⋯ CRCGN004_HA1E_24H:BRD-K78683072-001-01-6:10UM trt_cp HA1E \n", "51 ⋯ CRCGN001_HA1E_6H:BRD-K78683072-001-01-6:10 trt_cp HA1E \n", "52 ⋯ CRCGN001_HA1E_24H:BRD-K78683072-001-01-6:10 trt_cp HA1E \n", " det_wells \n", "1 J07 \n", "2 J07 \n", "3 L03 \n", "4 H10 \n", "5 B14 \n", "6 B15 \n", "7 B18 \n", "8 B16 \n", "9 B13 \n", "10 B15 \n", "11 B17 \n", "12 B18 \n", "13 B16 \n", "14 B14 \n", "15 B13 \n", "16 B17 \n", "17 K04 \n", "18 M17 \n", "19 M18 \n", "20 M15 \n", "21 M17 \n", "22 M13 \n", "23 M18 \n", "24 M16 \n", "25 M13 \n", "26 M16 \n", "27 M15 \n", "28 M14 \n", "29 M14 \n", "30 N20 \n", "31 N22 \n", "32 N21 \n", "33 N24 \n", "34 N19 \n", "35 N23 \n", "36 N13 \n", "37 H03 \n", "38 H03 \n", "39 L04 \n", "40 L05 \n", "41 L02 \n", "42 L03 \n", "43 L01 \n", "44 L06 \n", "45 P15 \n", "46 D03 \n", "47 H15|I13|L18 \n", "48 H15|I13 \n", "49 D19|F18|G07 \n", "50 D19|F18|G07 \n", "51 D19|F18|G07 \n", "52 D14|D19|F18|G07|K11\n", " det_plates \n", "1 CPC001_HA1E_24H_X1_B3_DUO52HI53LO|CPC001_HA1E_24H_X2_B3_DUO52HI53LO|CPC001_HA1E_24H_X3_B3_DUO52HI53LO \n", "2 CPC001_HA1E_6H_X1_B3_DUO52HI53LO|CPC001_HA1E_6H_X2_B3_DUO52HI53LO|CPC001_HA1E_6H_X3_B3_DUO52HI53LO \n", "3 CPC004_HA1E_6H_X1_B3_DUO52HI53LO|CPC004_HA1E_6H_X2_B3_DUO52HI53LO|CPC004_HA1E_6H_X3_B3_DUO52HI53LO \n", "4 CPC011_HA1E_6H_X1_F1B3_DUO52HI53LO|CPC011_HA1E_6H_X3_F1B3_DUO52HI53LO \n", "5 REP.B018_HA1E_24H_X1_B23|REP.B018_HA1E_24H_X2_B23 \n", "6 REP.A018_HA1E_24H_X1_B24|REP.A018_HA1E_24H_X2_B23|REP.A018_HA1E_24H_X3_B23 \n", "7 REP.A018_HA1E_24H_X1_B24|REP.A018_HA1E_24H_X2_B23|REP.A018_HA1E_24H_X3_B23 \n", "8 REP.B018_HA1E_24H_X1_B23|REP.B018_HA1E_24H_X2_B23 \n", "9 REP.A018_HA1E_24H_X1_B24|REP.A018_HA1E_24H_X2_B23|REP.A018_HA1E_24H_X3_B23 \n", "10 REP.B018_HA1E_24H_X1_B23|REP.B018_HA1E_24H_X2_B23 \n", "11 REP.A018_HA1E_24H_X1_B24|REP.A018_HA1E_24H_X2_B23|REP.A018_HA1E_24H_X3_B23 \n", "12 REP.B018_HA1E_24H_X1_B23|REP.B018_HA1E_24H_X2_B23 \n", "13 REP.A018_HA1E_24H_X1_B24|REP.A018_HA1E_24H_X2_B23|REP.A018_HA1E_24H_X3_B23 \n", "14 REP.A018_HA1E_24H_X1_B24|REP.A018_HA1E_24H_X2_B23|REP.A018_HA1E_24H_X3_B23 \n", "15 REP.B018_HA1E_24H_X1_B23|REP.B018_HA1E_24H_X2_B23 \n", "16 REP.B018_HA1E_24H_X1_B23|REP.B018_HA1E_24H_X2_B23 \n", "17 CPC006_HA1E_6H_X1_B3_DUO52HI53LO|CPC006_HA1E_6H_X2_B3_DUO52HI53LO|CPC006_HA1E_6H_X3_B3_DUO52HI53LO|CPC006_HA1E_6H_X4_B4_DUO52HI53LO|CPC006_HA1E_6H_X5_B4_DUO52HI53LO\n", "18 REP.B007_HA1E_24H_X1_B24 \n", "19 REP.A007_HA1E_24H_X1_B22|REP.A007_HA1E_24H_X2_B24|REP.A007_HA1E_24H_X3_B22 \n", "20 REP.B007_HA1E_24H_X1_B24 \n", "21 REP.A007_HA1E_24H_X1_B22|REP.A007_HA1E_24H_X2_B24|REP.A007_HA1E_24H_X3_B22 \n", "22 REP.B007_HA1E_24H_X1_B24 \n", "23 REP.B007_HA1E_24H_X1_B24 \n", "24 REP.B007_HA1E_24H_X1_B24 \n", "25 REP.A007_HA1E_24H_X1_B22|REP.A007_HA1E_24H_X2_B24|REP.A007_HA1E_24H_X3_B22 \n", "26 REP.A007_HA1E_24H_X1_B22|REP.A007_HA1E_24H_X3_B22 \n", "27 REP.A007_HA1E_24H_X1_B22|REP.A007_HA1E_24H_X2_B24|REP.A007_HA1E_24H_X3_B22 \n", "28 REP.A007_HA1E_24H_X1_B22|REP.A007_HA1E_24H_X2_B24|REP.A007_HA1E_24H_X3_B22 \n", "29 REP.B007_HA1E_24H_X1_B24 \n", "30 PCLB003_HA1E_24H_X1_B13|PCLB003_HA1E_24H_X2_B13|PCLB003_HA1E_24H_X3_B13 \n", "31 PCLB003_HA1E_24H_X1_B13|PCLB003_HA1E_24H_X2_B13|PCLB003_HA1E_24H_X3_B13 \n", "32 PCLB003_HA1E_24H_X1_B13|PCLB003_HA1E_24H_X2_B13|PCLB003_HA1E_24H_X3_B13 \n", "33 PCLB003_HA1E_24H_X1_B13|PCLB003_HA1E_24H_X2_B13|PCLB003_HA1E_24H_X3_B13 \n", "34 PCLB003_HA1E_24H_X1_B13|PCLB003_HA1E_24H_X2_B13|PCLB003_HA1E_24H_X3_B13 \n", "35 PCLB003_HA1E_24H_X1_B13|PCLB003_HA1E_24H_X2_B13|PCLB003_HA1E_24H_X3_B13 \n", "36 CPC006_HA1E_24H_X1.A2_F1B3_DUO52HI53LO|CPC006_HA1E_24H_X2_B3_DUO52HI53LO|CPC006_HA1E_24H_X3_B3_DUO52HI53LO \n", "37 CPC007_HA1E_24H_X1_B3_DUO52HI53LO|CPC007_HA1E_24H_X2_B3_DUO52HI53LO|CPC007_HA1E_24H_X3_B3_DUO52HI53LO \n", "38 CPC007_HA1E_6H_X1_B3_DUO52HI53LO|CPC007_HA1E_6H_X2_B3_DUO52HI53LO|CPC007_HA1E_6H_X3_B3_DUO52HI53LO \n", "39 PBIOA014_HA1E_24H_X2_B21|PBIOA014_HA1E_24H_X3_B21 \n", "40 PBIOA014_HA1E_24H_X1_B21|PBIOA014_HA1E_24H_X2_B21|PBIOA014_HA1E_24H_X3_B21 \n", "41 PBIOA014_HA1E_24H_X1_B21|PBIOA014_HA1E_24H_X2_B21|PBIOA014_HA1E_24H_X3_B21 \n", "42 PBIOA014_HA1E_24H_X1_B21|PBIOA014_HA1E_24H_X2_B21|PBIOA014_HA1E_24H_X3_B21 \n", "43 PBIOA014_HA1E_24H_X1_B21|PBIOA014_HA1E_24H_X2_B21|PBIOA014_HA1E_24H_X3_B21 \n", "44 PBIOA014_HA1E_24H_X1_B21|PBIOA014_HA1E_24H_X2_B21|PBIOA014_HA1E_24H_X3_B21 \n", "45 CPC005_HA1E_6H_X3_B3_DUO52HI53LO \n", "46 CPC005_HA1E_6H_X1_B3_DUO52HI53LO|CPC005_HA1E_6H_X3_B3_DUO52HI53LO \n", "47 CRCGN004_HA1E_6H_X6_F1B7_DUO52HI53LO \n", "48 CRCGN001_HA1E_24H_X1_F1B4_DUO52HI53LO|CRCGN001_HA1E_24H_X3_F1B4_DUO52HI53LO \n", "49 CRCGN004_HA1E_24H_X6_F1B7_DUO52HI53LO|CRCGN004_HA1E_24H_X7_F1B7_DUO52HI53LO|CRCGN004_HA1E_24H_X8_F1B7_DUO52HI53LO \n", "50 CRCGN004_HA1E_24H_X6_F1B7_DUO52HI53LO|CRCGN004_HA1E_24H_X7_F1B7_DUO52HI53LO|CRCGN004_HA1E_24H_X8_F1B7_DUO52HI53LO \n", "51 CRCGN001_HA1E_6H_X1_F1B4_DUO52HI53LO|CRCGN001_HA1E_6H_X2_F1B4_DUO52HI53LO|CRCGN001_HA1E_6H_X3_F1B4_DUO52HI53LO \n", "52 CRCGN001_HA1E_24H_X1_F1B4_DUO52HI53LO|CRCGN001_HA1E_24H_X2_F1B4_DUO52HI53LO|CRCGN001_HA1E_24H_X3_F1B4_DUO52HI53LO \n", " distil_ids \n", "1 CPC001_HA1E_24H_X1_B3_DUO52HI53LO:J07|CPC001_HA1E_24H_X2_B3_DUO52HI53LO:J07|CPC001_HA1E_24H_X3_B3_DUO52HI53LO:J07 \n", "2 CPC001_HA1E_6H_X1_B3_DUO52HI53LO:J07|CPC001_HA1E_6H_X2_B3_DUO52HI53LO:J07|CPC001_HA1E_6H_X3_B3_DUO52HI53LO:J07 \n", "3 CPC004_HA1E_6H_X1_B3_DUO52HI53LO:L03|CPC004_HA1E_6H_X2_B3_DUO52HI53LO:L03|CPC004_HA1E_6H_X3_B3_DUO52HI53LO:L03 \n", "4 CPC011_HA1E_6H_X1_F1B3_DUO52HI53LO:H10|CPC011_HA1E_6H_X3_F1B3_DUO52HI53LO:H10 \n", "5 REP.B018_HA1E_24H_X1_B23:B14|REP.B018_HA1E_24H_X2_B23:B14 \n", "6 REP.A018_HA1E_24H_X1_B24:B15|REP.A018_HA1E_24H_X2_B23:B15|REP.A018_HA1E_24H_X3_B23:B15 \n", "7 REP.A018_HA1E_24H_X1_B24:B18|REP.A018_HA1E_24H_X2_B23:B18|REP.A018_HA1E_24H_X3_B23:B18 \n", "8 REP.B018_HA1E_24H_X1_B23:B16|REP.B018_HA1E_24H_X2_B23:B16 \n", "9 REP.A018_HA1E_24H_X1_B24:B13|REP.A018_HA1E_24H_X2_B23:B13|REP.A018_HA1E_24H_X3_B23:B13 \n", "10 REP.B018_HA1E_24H_X1_B23:B15|REP.B018_HA1E_24H_X2_B23:B15 \n", "11 REP.A018_HA1E_24H_X1_B24:B17|REP.A018_HA1E_24H_X2_B23:B17|REP.A018_HA1E_24H_X3_B23:B17 \n", "12 REP.B018_HA1E_24H_X1_B23:B18|REP.B018_HA1E_24H_X2_B23:B18 \n", "13 REP.A018_HA1E_24H_X1_B24:B16|REP.A018_HA1E_24H_X2_B23:B16|REP.A018_HA1E_24H_X3_B23:B16 \n", "14 REP.A018_HA1E_24H_X1_B24:B14|REP.A018_HA1E_24H_X2_B23:B14|REP.A018_HA1E_24H_X3_B23:B14 \n", "15 REP.B018_HA1E_24H_X1_B23:B13|REP.B018_HA1E_24H_X2_B23:B13 \n", "16 REP.B018_HA1E_24H_X1_B23:B17|REP.B018_HA1E_24H_X2_B23:B17 \n", "17 CPC006_HA1E_6H_X1_B3_DUO52HI53LO:K04|CPC006_HA1E_6H_X2_B3_DUO52HI53LO:K04|CPC006_HA1E_6H_X3_B3_DUO52HI53LO:K04|CPC006_HA1E_6H_X4_B4_DUO52HI53LO:K04|CPC006_HA1E_6H_X5_B4_DUO52HI53LO:K04 \n", "18 REP.B007_HA1E_24H_X1_B24:M17 \n", "19 REP.A007_HA1E_24H_X1_B22:M18|REP.A007_HA1E_24H_X2_B24:M18|REP.A007_HA1E_24H_X3_B22:M18 \n", "20 REP.B007_HA1E_24H_X1_B24:M15 \n", "21 REP.A007_HA1E_24H_X1_B22:M17|REP.A007_HA1E_24H_X2_B24:M17|REP.A007_HA1E_24H_X3_B22:M17 \n", "22 REP.B007_HA1E_24H_X1_B24:M13 \n", "23 REP.B007_HA1E_24H_X1_B24:M18 \n", "24 REP.B007_HA1E_24H_X1_B24:M16 \n", "25 REP.A007_HA1E_24H_X1_B22:M13|REP.A007_HA1E_24H_X2_B24:M13|REP.A007_HA1E_24H_X3_B22:M13 \n", "26 REP.A007_HA1E_24H_X1_B22:M16|REP.A007_HA1E_24H_X3_B22:M16 \n", "27 REP.A007_HA1E_24H_X1_B22:M15|REP.A007_HA1E_24H_X2_B24:M15|REP.A007_HA1E_24H_X3_B22:M15 \n", "28 REP.A007_HA1E_24H_X1_B22:M14|REP.A007_HA1E_24H_X2_B24:M14|REP.A007_HA1E_24H_X3_B22:M14 \n", "29 REP.B007_HA1E_24H_X1_B24:M14 \n", "30 PCLB003_HA1E_24H_X1_B13:N20|PCLB003_HA1E_24H_X2_B13:N20|PCLB003_HA1E_24H_X3_B13:N20 \n", "31 PCLB003_HA1E_24H_X1_B13:N22|PCLB003_HA1E_24H_X2_B13:N22|PCLB003_HA1E_24H_X3_B13:N22 \n", "32 PCLB003_HA1E_24H_X1_B13:N21|PCLB003_HA1E_24H_X2_B13:N21|PCLB003_HA1E_24H_X3_B13:N21 \n", "33 PCLB003_HA1E_24H_X1_B13:N24|PCLB003_HA1E_24H_X2_B13:N24|PCLB003_HA1E_24H_X3_B13:N24 \n", "34 PCLB003_HA1E_24H_X1_B13:N19|PCLB003_HA1E_24H_X2_B13:N19|PCLB003_HA1E_24H_X3_B13:N19 \n", "35 PCLB003_HA1E_24H_X1_B13:N23|PCLB003_HA1E_24H_X2_B13:N23|PCLB003_HA1E_24H_X3_B13:N23 \n", "36 CPC006_HA1E_24H_X1.A2_F1B3_DUO52HI53LO:N13|CPC006_HA1E_24H_X2_B3_DUO52HI53LO:N13|CPC006_HA1E_24H_X3_B3_DUO52HI53LO:N13 \n", "37 CPC007_HA1E_24H_X1_B3_DUO52HI53LO:H03|CPC007_HA1E_24H_X2_B3_DUO52HI53LO:H03|CPC007_HA1E_24H_X3_B3_DUO52HI53LO:H03 \n", "38 CPC007_HA1E_6H_X1_B3_DUO52HI53LO:H03|CPC007_HA1E_6H_X2_B3_DUO52HI53LO:H03|CPC007_HA1E_6H_X3_B3_DUO52HI53LO:H03 \n", "39 PBIOA014_HA1E_24H_X2_B21:L04|PBIOA014_HA1E_24H_X3_B21:L04 \n", "40 PBIOA014_HA1E_24H_X1_B21:L05|PBIOA014_HA1E_24H_X2_B21:L05|PBIOA014_HA1E_24H_X3_B21:L05 \n", "41 PBIOA014_HA1E_24H_X1_B21:L02|PBIOA014_HA1E_24H_X2_B21:L02|PBIOA014_HA1E_24H_X3_B21:L02 \n", "42 PBIOA014_HA1E_24H_X1_B21:L03|PBIOA014_HA1E_24H_X2_B21:L03|PBIOA014_HA1E_24H_X3_B21:L03 \n", "43 PBIOA014_HA1E_24H_X1_B21:L01|PBIOA014_HA1E_24H_X2_B21:L01|PBIOA014_HA1E_24H_X3_B21:L01 \n", "44 PBIOA014_HA1E_24H_X1_B21:L06|PBIOA014_HA1E_24H_X2_B21:L06|PBIOA014_HA1E_24H_X3_B21:L06 \n", "45 CPC005_HA1E_6H_X3_B3_DUO52HI53LO:P15 \n", "46 CPC005_HA1E_6H_X1_B3_DUO52HI53LO:D03|CPC005_HA1E_6H_X3_B3_DUO52HI53LO:D03 \n", "47 CRCGN004_HA1E_6H_X6_F1B7_DUO52HI53LO:H15|CRCGN004_HA1E_6H_X6_F1B7_DUO52HI53LO:I13|CRCGN004_HA1E_6H_X6_F1B7_DUO52HI53LO:L18 \n", "48 CRCGN001_HA1E_24H_X1_F1B4_DUO52HI53LO:H15|CRCGN001_HA1E_24H_X3_F1B4_DUO52HI53LO:I13 \n", "49 CRCGN004_HA1E_24H_X6_F1B7_DUO52HI53LO:D19|CRCGN004_HA1E_24H_X6_F1B7_DUO52HI53LO:F18|CRCGN004_HA1E_24H_X6_F1B7_DUO52HI53LO:G07|CRCGN004_HA1E_24H_X7_F1B7_DUO52HI53LO:D19|CRCGN004_HA1E_24H_X7_F1B7_DUO52HI53LO:F18|CRCGN004_HA1E_24H_X7_F1B7_DUO52HI53LO:G07|CRCGN004_HA1E_24H_X8_F1B7_DUO52HI53LO:D19|CRCGN004_HA1E_24H_X8_F1B7_DUO52HI53LO:F18|CRCGN004_HA1E_24H_X8_F1B7_DUO52HI53LO:G07 \n", "50 CRCGN004_HA1E_24H_X6_F1B7_DUO52HI53LO:D19|CRCGN004_HA1E_24H_X6_F1B7_DUO52HI53LO:F18|CRCGN004_HA1E_24H_X6_F1B7_DUO52HI53LO:G07|CRCGN004_HA1E_24H_X7_F1B7_DUO52HI53LO:D19|CRCGN004_HA1E_24H_X7_F1B7_DUO52HI53LO:F18|CRCGN004_HA1E_24H_X7_F1B7_DUO52HI53LO:G07|CRCGN004_HA1E_24H_X8_F1B7_DUO52HI53LO:D19|CRCGN004_HA1E_24H_X8_F1B7_DUO52HI53LO:F18|CRCGN004_HA1E_24H_X8_F1B7_DUO52HI53LO:G07 \n", "51 CRCGN001_HA1E_6H_X1_F1B4_DUO52HI53LO:D19|CRCGN001_HA1E_6H_X1_F1B4_DUO52HI53LO:F18|CRCGN001_HA1E_6H_X1_F1B4_DUO52HI53LO:G07|CRCGN001_HA1E_6H_X2_F1B4_DUO52HI53LO:D19|CRCGN001_HA1E_6H_X2_F1B4_DUO52HI53LO:F18|CRCGN001_HA1E_6H_X2_F1B4_DUO52HI53LO:G07|CRCGN001_HA1E_6H_X3_F1B4_DUO52HI53LO:D19|CRCGN001_HA1E_6H_X3_F1B4_DUO52HI53LO:F18|CRCGN001_HA1E_6H_X3_F1B4_DUO52HI53LO:G07 \n", "52 CRCGN001_HA1E_24H_X1_F1B4_DUO52HI53LO:D14|CRCGN001_HA1E_24H_X1_F1B4_DUO52HI53LO:D19|CRCGN001_HA1E_24H_X1_F1B4_DUO52HI53LO:F18|CRCGN001_HA1E_24H_X1_F1B4_DUO52HI53LO:G07|CRCGN001_HA1E_24H_X2_F1B4_DUO52HI53LO:D19|CRCGN001_HA1E_24H_X2_F1B4_DUO52HI53LO:F18|CRCGN001_HA1E_24H_X2_F1B4_DUO52HI53LO:G07|CRCGN001_HA1E_24H_X2_F1B4_DUO52HI53LO:K11|CRCGN001_HA1E_24H_X3_F1B4_DUO52HI53LO:D14|CRCGN001_HA1E_24H_X3_F1B4_DUO52HI53LO:D19|CRCGN001_HA1E_24H_X3_F1B4_DUO52HI53LO:F18|CRCGN001_HA1E_24H_X3_F1B4_DUO52HI53LO:G07\n", " build_name project_code cmap_name is_ncs_exemplar\n", "1 NA CPC aminomethyltransferase 0 \n", "2 NA CPC aminomethyltransferase 1 \n", "3 NA CPC anagrelide 0 \n", "4 NA CPC anagrelide 0 \n", "5 NA REP anagrelide 1 \n", "6 NA REP anagrelide 0 \n", "7 NA REP anagrelide 0 \n", "8 NA REP anagrelide 0 \n", "9 NA REP anagrelide 0 \n", "10 NA REP anagrelide 0 \n", "11 NA REP anagrelide 0 \n", "12 NA REP anagrelide 0 \n", "13 NA REP anagrelide 0 \n", "14 NA REP anagrelide 0 \n", "15 NA REP anagrelide 0 \n", "16 NA REP anagrelide 0 \n", "17 NA CPC ARP-101 0 \n", "18 NA REP ARP-101 0 \n", "19 NA REP ARP-101 0 \n", "20 NA REP ARP-101 0 \n", "21 NA REP ARP-101 0 \n", "22 NA REP ARP-101 0 \n", "23 NA REP ARP-101 0 \n", "24 NA REP ARP-101 0 \n", "25 NA REP ARP-101 0 \n", "26 NA REP ARP-101 0 \n", "27 NA REP ARP-101 0 \n", "28 NA REP ARP-101 1 \n", "29 NA REP ARP-101 0 \n", "30 NA PCLB AVA 0 \n", "31 NA PCLB AVA 0 \n", "32 NA PCLB AVA 0 \n", "33 NA PCLB AVA 0 \n", "34 NA PCLB AVA 1 \n", "35 NA PCLB AVA 0 \n", "36 NA CPC BRD-K05402890 0 \n", "37 NA CPC BRD-K05402890 1 \n", "38 NA CPC BRD-K05402890 0 \n", "39 NA PBIOA BRD-K05402890 0 \n", "40 NA PBIOA BRD-K05402890 0 \n", "41 NA PBIOA BRD-K05402890 0 \n", "42 NA PBIOA BRD-K05402890 0 \n", "43 NA PBIOA BRD-K05402890 0 \n", "44 NA PBIOA BRD-K05402890 0 \n", "45 NA CPC R-59022 0 \n", "46 NA CPC ST-638 0 \n", "47 NA CRCGN tributyltin 0 \n", "48 NA CRCGN tributyltin 1 \n", "49 NA CRCGN triphenyl-tin 0 \n", "50 NA CRCGN triphenyl-tin 0 \n", "51 NA CRCGN triphenyl-tin 0 \n", "52 NA CRCGN triphenyl-tin 0 " ] }, "metadata": {}, "output_type": "display_data" } ], "source": [ "####extract drug information\n", "drug.RCC <- as.character(RCC.drug.result$Drug)\n", "drug.RCC <- sapply(drug.RCC, function(x){\n", " a <- unlist(strsplit(x, \"__\"))\n", " return(a[1:2])\n", "})\n", "drug.RCC <- unique(t(drug.RCC))\n", "\n", "idx <- apply(drug.RCC, 1, function(x){\n", " index <- which(siginfo_beta$cmap_name == x[1] & siginfo_beta$cell_iname == x[2])\n", " return(siginfo_beta[index, ])\n", "})\n", "drug..RCC.info <- ldply (idx, data.frame)\n", "write_xlsx(drug..RCC.info, \"/data/active_data/lzl/RenalTumor-20200713/DataAnalysis-20210803/Drug/LINCS/lincs.TF.RCC.drug.info.xlsx\")\n", "drug..RCC.info" ] }, { "cell_type": "code", "execution_count": 41, "id": "c9077678-241d-4402-ab30-77ac9c4bd3cc", "metadata": { "execution": { "iopub.execute_input": "2021-09-23T06:23:26.908720Z", "iopub.status.busy": "2021-09-23T06:23:26.905235Z", "iopub.status.idle": "2021-09-23T06:23:26.950160Z", "shell.execute_reply": "2021-09-23T06:23:26.948785Z" }, "scrolled": true, "tags": [], "vscode": { "languageId": "r" } }, "outputs": [ { "data": { "text/html": [ "\n", "\n", "\n", "\t\n", "\t\n", "\n", "\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\n", "
A data.frame: 11 × 2
Drugmean.Zscore
<chr><dbl>
triphenyl-tin__HA1E__trt_cptriphenyl-tin__HA1E__trt_cp -2.005953
AVA__HA1E__trt_cpAVA__HA1E__trt_cp -2.028199
ST-638__HA1E__trt_cpST-638__HA1E__trt_cp -2.139165
BRD-A51929314__HA1E__trt_cpBRD-A51929314__HA1E__trt_cp -2.227154
BRD-K05402890__HA1E__trt_cpBRD-K05402890__HA1E__trt_cp -2.309873
aminomethyltransferase__HA1E__trt_cpaminomethyltransferase__HA1E__trt_cp-2.349426
ARP-101__HA1E__trt_cpARP-101__HA1E__trt_cp -2.420850
R-59022__HA1E__trt_cpR-59022__HA1E__trt_cp -2.440392
homoharringtonine__HA1E__trt_cphomoharringtonine__HA1E__trt_cp -2.545411
anagrelide__HA1E__trt_cpanagrelide__HA1E__trt_cp -2.888882
tributyltin__HA1E__trt_cptributyltin__HA1E__trt_cp -3.094550
\n" ], "text/latex": [ "A data.frame: 11 × 2\n", "\\begin{tabular}{r|ll}\n", " & Drug & mean.Zscore\\\\\n", " & & \\\\\n", "\\hline\n", "\ttriphenyl-tin\\_\\_HA1E\\_\\_trt\\_cp & triphenyl-tin\\_\\_HA1E\\_\\_trt\\_cp & -2.005953\\\\\n", "\tAVA\\_\\_HA1E\\_\\_trt\\_cp & AVA\\_\\_HA1E\\_\\_trt\\_cp & -2.028199\\\\\n", "\tST-638\\_\\_HA1E\\_\\_trt\\_cp & ST-638\\_\\_HA1E\\_\\_trt\\_cp & -2.139165\\\\\n", "\tBRD-A51929314\\_\\_HA1E\\_\\_trt\\_cp & BRD-A51929314\\_\\_HA1E\\_\\_trt\\_cp & -2.227154\\\\\n", "\tBRD-K05402890\\_\\_HA1E\\_\\_trt\\_cp & BRD-K05402890\\_\\_HA1E\\_\\_trt\\_cp & -2.309873\\\\\n", "\taminomethyltransferase\\_\\_HA1E\\_\\_trt\\_cp & aminomethyltransferase\\_\\_HA1E\\_\\_trt\\_cp & -2.349426\\\\\n", "\tARP-101\\_\\_HA1E\\_\\_trt\\_cp & ARP-101\\_\\_HA1E\\_\\_trt\\_cp & -2.420850\\\\\n", "\tR-59022\\_\\_HA1E\\_\\_trt\\_cp & R-59022\\_\\_HA1E\\_\\_trt\\_cp & -2.440392\\\\\n", "\thomoharringtonine\\_\\_HA1E\\_\\_trt\\_cp & homoharringtonine\\_\\_HA1E\\_\\_trt\\_cp & -2.545411\\\\\n", "\tanagrelide\\_\\_HA1E\\_\\_trt\\_cp & anagrelide\\_\\_HA1E\\_\\_trt\\_cp & -2.888882\\\\\n", "\ttributyltin\\_\\_HA1E\\_\\_trt\\_cp & tributyltin\\_\\_HA1E\\_\\_trt\\_cp & -3.094550\\\\\n", "\\end{tabular}\n" ], "text/markdown": [ "\n", "A data.frame: 11 × 2\n", "\n", "| | Drug <chr> | mean.Zscore <dbl> |\n", "|---|---|---|\n", "| triphenyl-tin__HA1E__trt_cp | triphenyl-tin__HA1E__trt_cp | -2.005953 |\n", "| AVA__HA1E__trt_cp | AVA__HA1E__trt_cp | -2.028199 |\n", "| ST-638__HA1E__trt_cp | ST-638__HA1E__trt_cp | -2.139165 |\n", "| BRD-A51929314__HA1E__trt_cp | BRD-A51929314__HA1E__trt_cp | -2.227154 |\n", "| BRD-K05402890__HA1E__trt_cp | BRD-K05402890__HA1E__trt_cp | -2.309873 |\n", "| aminomethyltransferase__HA1E__trt_cp | aminomethyltransferase__HA1E__trt_cp | -2.349426 |\n", "| ARP-101__HA1E__trt_cp | ARP-101__HA1E__trt_cp | -2.420850 |\n", "| R-59022__HA1E__trt_cp | R-59022__HA1E__trt_cp | -2.440392 |\n", "| homoharringtonine__HA1E__trt_cp | homoharringtonine__HA1E__trt_cp | -2.545411 |\n", "| anagrelide__HA1E__trt_cp | anagrelide__HA1E__trt_cp | -2.888882 |\n", "| tributyltin__HA1E__trt_cp | tributyltin__HA1E__trt_cp | -3.094550 |\n", "\n" ], "text/plain": [ " Drug \n", "triphenyl-tin__HA1E__trt_cp triphenyl-tin__HA1E__trt_cp \n", "AVA__HA1E__trt_cp AVA__HA1E__trt_cp \n", "ST-638__HA1E__trt_cp ST-638__HA1E__trt_cp \n", "BRD-A51929314__HA1E__trt_cp BRD-A51929314__HA1E__trt_cp \n", "BRD-K05402890__HA1E__trt_cp BRD-K05402890__HA1E__trt_cp \n", "aminomethyltransferase__HA1E__trt_cp aminomethyltransferase__HA1E__trt_cp\n", "ARP-101__HA1E__trt_cp ARP-101__HA1E__trt_cp \n", "R-59022__HA1E__trt_cp R-59022__HA1E__trt_cp \n", "homoharringtonine__HA1E__trt_cp homoharringtonine__HA1E__trt_cp \n", "anagrelide__HA1E__trt_cp anagrelide__HA1E__trt_cp \n", "tributyltin__HA1E__trt_cp tributyltin__HA1E__trt_cp \n", " mean.Zscore\n", "triphenyl-tin__HA1E__trt_cp -2.005953 \n", "AVA__HA1E__trt_cp -2.028199 \n", "ST-638__HA1E__trt_cp -2.139165 \n", "BRD-A51929314__HA1E__trt_cp -2.227154 \n", "BRD-K05402890__HA1E__trt_cp -2.309873 \n", "aminomethyltransferase__HA1E__trt_cp -2.349426 \n", "ARP-101__HA1E__trt_cp -2.420850 \n", "R-59022__HA1E__trt_cp -2.440392 \n", "homoharringtonine__HA1E__trt_cp -2.545411 \n", "anagrelide__HA1E__trt_cp -2.888882 \n", "tributyltin__HA1E__trt_cp -3.094550 " ] }, "metadata": {}, "output_type": "display_data" } ], "source": [ "####identify the candidate drugs with Z-score\n", "mean.drug <- tapply(RCC.drug.result$ZSCORE, as.character(RCC.drug.result$Drug), mean)\n", "mean.drug <- data.frame(Drug = names(mean.drug), mean.Zscore = mean.drug)\n", "mean.drug <- mean.drug[order(mean.drug$mean.Zscore, decreasing = T),]\n", "mean.drug\n", "\n", "rankMean <- RCC.drug.result\n", "rankMean$Drug <- factor(rankMean $Drug, levels = mean.drug$Drug)\n", "rankMean <- arrange(rankMean, Drug)\n", "write_xlsx(rankMean, \"/data/active_data/lzl/RenalTumor-20200713/DataAnalysis-20210803/Drug/LINCS/lincs.TF.RCC.drug.meanRank.xlsx\")" ] }, { "cell_type": "code", "execution_count": 42, "id": "f972ca60-a183-4218-af20-0ce0be77891c", "metadata": { "execution": { "iopub.execute_input": "2021-09-23T06:23:30.857272Z", "iopub.status.busy": "2021-09-23T06:23:30.822297Z", "iopub.status.idle": "2021-09-23T06:23:30.904004Z", "shell.execute_reply": "2021-09-23T06:23:30.902795Z" }, "tags": [], "vscode": { "languageId": "r" } }, "outputs": [ { "data": { "text/html": [ "\n", "\n", "\n", "\t\n", "\t\n", "\n", "\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\t\n", "\n", "
A data.frame: 11 × 5
DrugTFZSCOREDrug.namecellLine
<fct><chr><dbl><fct><chr>
aminomethyltransferase__HA1E__trt_cpHOXC5-2.349426aminomethyltransferaseHA1E
anagrelide__HA1E__trt_cp ISL1 -2.888882anagrelide HA1E
ARP-101__HA1E__trt_cp HOXC5-2.420850ARP-101 HA1E
AVA__HA1E__trt_cp VENTX-2.028199AVA HA1E
BRD-A51929314__HA1E__trt_cp ISL1 -2.227154BRD-A51929314 HA1E
BRD-K05402890__HA1E__trt_cp ISL1 -2.309873BRD-K05402890 HA1E
homoharringtonine__HA1E__trt_cp HOXC5-2.545411homoharringtonine HA1E
R-59022__HA1E__trt_cp HOXC5-2.440392R-59022 HA1E
ST-638__HA1E__trt_cp ISL1 -2.139165ST-638 HA1E
tributyltin__HA1E__trt_cp ISL1 -3.094550tributyltin HA1E
triphenyl-tin__HA1E__trt_cp ISL1 -2.005953triphenyl-tin HA1E
\n" ], "text/latex": [ "A data.frame: 11 × 5\n", "\\begin{tabular}{lllll}\n", " Drug & TF & ZSCORE & Drug.name & cellLine\\\\\n", " & & & & \\\\\n", "\\hline\n", "\t aminomethyltransferase\\_\\_HA1E\\_\\_trt\\_cp & HOXC5 & -2.349426 & aminomethyltransferase & HA1E\\\\\n", "\t anagrelide\\_\\_HA1E\\_\\_trt\\_cp & ISL1 & -2.888882 & anagrelide & HA1E\\\\\n", "\t ARP-101\\_\\_HA1E\\_\\_trt\\_cp & HOXC5 & -2.420850 & ARP-101 & HA1E\\\\\n", "\t AVA\\_\\_HA1E\\_\\_trt\\_cp & VENTX & -2.028199 & AVA & HA1E\\\\\n", "\t BRD-A51929314\\_\\_HA1E\\_\\_trt\\_cp & ISL1 & -2.227154 & BRD-A51929314 & HA1E\\\\\n", "\t BRD-K05402890\\_\\_HA1E\\_\\_trt\\_cp & ISL1 & -2.309873 & BRD-K05402890 & HA1E\\\\\n", "\t homoharringtonine\\_\\_HA1E\\_\\_trt\\_cp & HOXC5 & -2.545411 & homoharringtonine & HA1E\\\\\n", "\t R-59022\\_\\_HA1E\\_\\_trt\\_cp & HOXC5 & -2.440392 & R-59022 & HA1E\\\\\n", "\t ST-638\\_\\_HA1E\\_\\_trt\\_cp & ISL1 & -2.139165 & ST-638 & HA1E\\\\\n", "\t tributyltin\\_\\_HA1E\\_\\_trt\\_cp & ISL1 & -3.094550 & tributyltin & HA1E\\\\\n", "\t triphenyl-tin\\_\\_HA1E\\_\\_trt\\_cp & ISL1 & -2.005953 & triphenyl-tin & HA1E\\\\\n", "\\end{tabular}\n" ], "text/markdown": [ "\n", "A data.frame: 11 × 5\n", "\n", "| Drug <fct> | TF <chr> | ZSCORE <dbl> | Drug.name <fct> | cellLine <chr> |\n", "|---|---|---|---|---|\n", "| aminomethyltransferase__HA1E__trt_cp | HOXC5 | -2.349426 | aminomethyltransferase | HA1E |\n", "| anagrelide__HA1E__trt_cp | ISL1 | -2.888882 | anagrelide | HA1E |\n", "| ARP-101__HA1E__trt_cp | HOXC5 | -2.420850 | ARP-101 | HA1E |\n", "| AVA__HA1E__trt_cp | VENTX | -2.028199 | AVA | HA1E |\n", "| BRD-A51929314__HA1E__trt_cp | ISL1 | -2.227154 | BRD-A51929314 | HA1E |\n", "| BRD-K05402890__HA1E__trt_cp | ISL1 | -2.309873 | BRD-K05402890 | HA1E |\n", "| homoharringtonine__HA1E__trt_cp | HOXC5 | -2.545411 | homoharringtonine | HA1E |\n", "| R-59022__HA1E__trt_cp | HOXC5 | -2.440392 | R-59022 | HA1E |\n", "| ST-638__HA1E__trt_cp | ISL1 | -2.139165 | ST-638 | HA1E |\n", "| tributyltin__HA1E__trt_cp | ISL1 | -3.094550 | tributyltin | HA1E |\n", "| triphenyl-tin__HA1E__trt_cp | ISL1 | -2.005953 | triphenyl-tin | HA1E |\n", "\n" ], "text/plain": [ " Drug TF ZSCORE Drug.name \n", "1 aminomethyltransferase__HA1E__trt_cp HOXC5 -2.349426 aminomethyltransferase\n", "2 anagrelide__HA1E__trt_cp ISL1 -2.888882 anagrelide \n", "3 ARP-101__HA1E__trt_cp HOXC5 -2.420850 ARP-101 \n", "4 AVA__HA1E__trt_cp VENTX -2.028199 AVA \n", "5 BRD-A51929314__HA1E__trt_cp ISL1 -2.227154 BRD-A51929314 \n", "6 BRD-K05402890__HA1E__trt_cp ISL1 -2.309873 BRD-K05402890 \n", "7 homoharringtonine__HA1E__trt_cp HOXC5 -2.545411 homoharringtonine \n", "8 R-59022__HA1E__trt_cp HOXC5 -2.440392 R-59022 \n", "9 ST-638__HA1E__trt_cp ISL1 -2.139165 ST-638 \n", "10 tributyltin__HA1E__trt_cp ISL1 -3.094550 tributyltin \n", "11 triphenyl-tin__HA1E__trt_cp ISL1 -2.005953 triphenyl-tin \n", " cellLine\n", "1 HA1E \n", "2 HA1E \n", "3 HA1E \n", "4 HA1E \n", "5 HA1E \n", "6 HA1E \n", "7 HA1E \n", "8 HA1E \n", "9 HA1E \n", "10 HA1E \n", "11 HA1E " ] }, "metadata": {}, "output_type": "display_data" } ], "source": [ "#### drug down-regulated the gene expression\n", "negative.zscore <- RCC.drug.result[which(RCC.drug.result$ZSCORE<0),]\n", "negative.zscore.mean <- tapply(negative.zscore$ZSCORE, as.character(negative.zscore$Drug), mean)\n", "negative.zscore.mean <- data.frame(Drug = names(negative.zscore.mean), mean.Zscore = negative.zscore.mean)\n", "negative.zscore.mean <- negative.zscore.mean[order(negative.zscore.mean$mean.Zscore),]\n", "#negative.zscore.mean\n", "\n", "negative.rankMean <- negative.zscore\n", "negative.rankMean$Drug.name <- gsub(\"__.*\", \"\", negative.rankMean$Drug)\n", "idx <- names(sort(table(negative.rankMean$Drug.name), decreasing = T))\n", "negative.rankMean$Drug.name <- factor(negative.rankMean$Drug.name, levels = idx)\n", "negative.rankMean <- arrange(negative.rankMean, Drug.name)\n", "write_xlsx(negative.rankMean, \"/data/active_data/lzl/RenalTumor-20200713/DataAnalysis-20210803/Drug/LINCS/lincs.TF.RCC.drug.negative.rankMean.xlsx\")\n", "negative.rankMean" ] } ], "metadata": { "kernelspec": { "display_name": "R", "language": "R", "name": "ir" }, "language_info": { "codemirror_mode": "r", "file_extension": ".r", "mimetype": "text/x-r-source", "name": "R", "pygments_lexer": "r", "version": "4.0.3" }, "widgets": { "application/vnd.jupyter.widget-state+json": { "state": {}, "version_major": 2, "version_minor": 0 } } }, "nbformat": 4, "nbformat_minor": 5 }