RenalTumor / Git / Commit [40a513]

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Commit [40a513] main

Initial commit

Authored by: AlyssaS 2025-04-19

Browse code at this revision

Parent: [9c539a]

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added	ATAC/AnalysisPipeline/1.mergeData.R
added	ATAC/AnalysisPipeline/2.cluster.R
added	ATAC/AnalysisPipeline/3.1.integrate.scATAC.scRNA3000.R
added	ATAC/AnalysisPipeline/3.2.AssignCellType.R
added	ATAC/AnalysisPipeline/4.1.callPeak&DAR.R
added	ATAC/AnalysisPipeline/4.2.peakAnnotation.genomicLocation.R
added	ATAC/AnalysisPipeline/5.1.motif.enrichment.R
added	ATAC/AnalysisPipeline/5.2.motif.analysis.R
added	ATAC/AnalysisPipeline/5.3.1.drug.LINCS.ipynb
added	ATAC/AnalysisPipeline/5.3.2.drug.plot.R
added	ATAC/AnalysisPipeline/6.1.cis-coassessibility.R
added	ATAC/AnalysisPipeline/6.2.ccans.annotated.genomicLocation.R
added	ATAC/AnalysisPipeline/7.1.All.TF.target.R
added	ATAC/AnalysisPipeline/7.2.Tumor.TFs.regulatoryNetwork.R
added	ATAC/AnalysisPipeline/8.1.Immune.CD8T.R
added	ATAC/AnalysisPipeline/8.1.Immune.CD8T.TF.target.R
added	ATAC/AnalysisPipeline/8.2.Immune.Macrophage.R
added	ATAC/AnalysisPipeline/8.2.Immune.Macrophage.TF.target.R
added	ATAC/AnalysisPipeline/ExtraDataAnalysis.R
added	ATAC/Functions/FindRegion.R
added	ATAC/Functions/Great.enrich.R
added	ATAC/Functions/MAD.R
added	ATAC/Functions/TCGA-data.R
added	ATAC/Functions/scATAC.Integrate.multipleSample.R
added	ATAC/Functions/user.CoveragePlot.R

ATAC/AnalysisPipeline/1.mergeData.R Diff Switch to side-by-side view

ATAC/AnalysisPipeline/2.cluster.R Diff Switch to side-by-side view

ATAC/AnalysisPipeline/3.1.integrate.scATAC.scRNA3000.R Diff Switch to side-by-side view

ATAC/AnalysisPipeline/3.2.AssignCellType.R Diff Switch to side-by-side view

ATAC/AnalysisPipeline/4.1.callPeak&DAR.R Diff Switch to side-by-side view

ATAC/AnalysisPipeline/4.2.peakAnnotation.genomicLocation.R Diff Switch to side-by-side view

ATAC/AnalysisPipeline/5.1.motif.enrichment.R Diff Switch to side-by-side view

ATAC/AnalysisPipeline/5.2.motif.analysis.R Diff Switch to side-by-side view

ATAC/AnalysisPipeline/5.3.1.drug.LINCS.ipynb Diff Switch to side-by-side view

ATAC/AnalysisPipeline/5.3.2.drug.plot.R Diff Switch to side-by-side view

ATAC/AnalysisPipeline/6.1.cis-coassessibility.R Diff Switch to side-by-side view

ATAC/AnalysisPipeline/6.2.ccans.annotated.genomicLocation.R Diff Switch to side-by-side view

ATAC/AnalysisPipeline/7.1.All.TF.target.R Diff Switch to side-by-side view

ATAC/AnalysisPipeline/7.2.Tumor.TFs.regulatoryNetwork.R Diff Switch to side-by-side view

ATAC/AnalysisPipeline/8.1.Immune.CD8T.R Diff Switch to side-by-side view

ATAC/AnalysisPipeline/8.1.Immune.CD8T.TF.target.R Diff Switch to side-by-side view

ATAC/AnalysisPipeline/8.2.Immune.Macrophage.R Diff Switch to side-by-side view

ATAC/AnalysisPipeline/8.2.Immune.Macrophage.TF.target.R Diff Switch to side-by-side view

ATAC/AnalysisPipeline/ExtraDataAnalysis.R Diff Switch to side-by-side view

ATAC/Functions/FindRegion.R Diff Switch to side-by-side view

ATAC/Functions/Great.enrich.R Diff Switch to side-by-side view

ATAC/Functions/MAD.R Diff Switch to side-by-side view

ATAC/Functions/TCGA-data.R Diff Switch to side-by-side view

ATAC/Functions/scATAC.Integrate.multipleSample.R Diff Switch to side-by-side view

ATAC/Functions/user.CoveragePlot.R Diff Switch to side-by-side view

1 2 3 > >> (Page 1 of 3)