60 lines (59 with data), 1.6 kB
{
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"# Exercise: Quantum machine learning on lower-dimensional single-cell RNAseq data\n",
"\n",
"We will consider Breast Cancer multi-omics data in this exercise and use it to classify breast cancer subtypes Luminal A and Luminal B. \n",
"\n",
"We obtained 545 breast cancer samples from TCGA for which both RNAseq and Methylation450 data were available. The dataset consisted of 414 Luminal-A and 141 Luminal-B samples. We considered 28,495 genes and 363,791 methylation sites for a total of 392,286 features. We concatenated the RNAseq and Methylation450 data and projected them to a 10-dimensional space using PCA. "
]
},
{
"cell_type": "markdown",
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"source": [
"Perform the experiments from the other notebook and use it to classify Luminal A vs. Luminal B and report the results. "
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"Data can be found in the the `../data/BrCa` subdirectory. "
]
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"source": [
"#your code here\n"
]
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