# ISMB Tutorial

## Getting Started

### Prerequisites

1. Create the environment from the `env.txt` file:

```

conda create -n "QML" 

pip install -r env.txt

```

* Note: if you receive the error `bash: conda: command not found...`, you need to install Anaconda to your development environment (see "Additional resources" below)

2. Activate the new environment:

```

conda activate QML

```

3. Verify that the new environment was installed correctly:

```

conda env list

```

<!-- * Additional resources:

   * [Connect to computing cluster](http://ccc.pok.ibm.com:1313/gettingstarted/newusers/connecting/)

   * [Set up / install Anaconda on remote linux server](https://kengchichang.com/post/conda-linux/)

   * [Set up remote development environment using VSCode](https://code.visualstudio.com/docs/remote/ssh) -->

<a name="running_comical"></a>

<!-- ### Running QML -->

<!-- [![Notebook Template][notebook]](#running_comical) -->

<!-- 1. Request resources from computing cluster:

```

jbsub -cores 2+1 -q x86_1h -mem 5g -interactive bash

```

OR

Submit your job without the interactive session (shown later).  -->

<!-- 2. Activate the new environment:

```

conda activate QML

``` -->

4. Run QML pipeline:

```

python main.py --file your_file -e 50 -i 10 -p 5 -cv 5

```

### Help

```

python main.py --help

```

## Authors

Contributors and contact info:

* Aritra Bose (a.bose@ibm.com)