--- a +++ b/SessionIV_QML/exercise_qml.ipynb @@ -0,0 +1,59 @@ +{ + "cells": [ + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "# Exercise: Quantum machine learning on lower-dimensional single-cell RNAseq data\n", + "\n", + "We will consider Breast Cancer multi-omics data in this exercise and use it to classify breast cancer subtypes Luminal A and Luminal B. \n", + "\n", + "We obtained 545 breast cancer samples from TCGA for which both RNAseq and Methylation450 data were available. The dataset consisted of 414 Luminal-A and 141 Luminal-B samples. We considered 28,495 genes and 363,791 methylation sites for a total of 392,286 features. We concatenated the RNAseq and Methylation450 data and projected them to a 10-dimensional space using PCA. " + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "Perform the experiments from the other notebook and use it to classify Luminal A vs. Luminal B and report the results. " + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "Data can be found in the the `../data/BrCa` subdirectory. " + ] + }, + { + "cell_type": "code", + "execution_count": 1, + "metadata": {}, + "outputs": [], + "source": [ + "#your code here\n" + ] + } + ], + "metadata": { + "kernelspec": { + "display_name": "Python 3", + "language": "python", + "name": "python3" + }, + "language_info": { + "codemirror_mode": { + "name": "ipython", + "version": 3 + }, + "file_extension": ".py", + "mimetype": "text/x-python", + "name": "python", + "nbconvert_exporter": "python", + "pygments_lexer": "ipython3", + "version": "3.11.9" + } + }, + "nbformat": 4, + "nbformat_minor": 2 +}