{
  "workDir": ["."],
  "fastqcDir": ["fastqc"],
  "trimmomaticDir": ["Trimmomatic-0.39/trimmomatic-0.39.jar"],
  "trimAdapter": ["Trimmomatic-0.39/adapters/NexteraPE-PE.fa"],
  "bt2Dir": ["bowtie2"],
  "mapRef": ["ref/fasta/genome"],
  "samtDir": ["samtools"],
  "picardDir": ["picard.jar"],
  "bedtDir": ["bedtools"],
  "macsDir": ["macs2"],
  "deeptDir": ["deeptools"],
  "bdg2bwDir": ["bedGraphToBigWig"],
  "refLen": ["ref/fasta/genome.fa.fai"],
  "idrDir": ["idr"],
  "homerDir": ["homer"],
  "knownMotif": ["homer/data/knownTFs/vertebrates/known.motifs"]
}