Protocols-4pub / Git / Commit [d06c2b]

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Commit [d06c2b]

Initial commit

Authored by: AlyssaS 2025-04-19

Browse code at this revision

Parent: [be78b7]

Child: [314984]

<< < 1 2 3 > >> (Page 2 of 3)

added	c_VisualizationScript/Visulz_bulkATAC_heatmapPeak.R
added	c_VisualizationScript/Visulz_bulkATAC_heatmapTrack.R
added	c_VisualizationScript/Visulz_bulkATAC_motifEnrich.R
added	c_VisualizationScript/Visulz_bulkATAC_network.R
added	c_VisualizationScript/Visulz_bulkATAC_peakAnnoDisp.R
added	c_VisualizationScript/Visulz_bulkATAC_trackPlot.R
added	c_VisualizationScript/Visulz_bulkRNA_GO.R
added	c_VisualizationScript/Visulz_bulkRNA_MAplot.R
added	c_VisualizationScript/Visulz_bulkRNA_PCA.R
added	c_VisualizationScript/Visulz_bulkRNA_heatmap.R
added	c_VisualizationScript/Visulz_bulkRNA_volcano.R
added	data/hg19anno.rds
added	data/hg19canonicalTrans.rds
added	data/hg19exon.rds
added	data/hg19geneTSS.bed
added	data/hg19trans.rds
added	data/humanHouseKeeping.txt
added	data/motifTable.txt
added	exampleData/RNA/data/counts.txt
added	exampleData/RNA/mid/CiPS_vs_Fib.DEG.csv
added	exampleData/RNA/mid/CiPS_vs_Fib.down.GO.csv
added	exampleData/RNA/mid/CiPS_vs_Fib.up.GO.csv
added	exampleData/RNA/mid/DEGres.rds
added	exampleData/RNA/mid/ES_vs_Fib.DEG.csv
added	exampleData/RNA/mid/ES_vs_Fib.down.GO.csv

c_VisualizationScript/Visulz_bulkATAC_heatmapPeak.R Diff Switch to side-by-side view

c_VisualizationScript/Visulz_bulkATAC_heatmapTrack.R Diff Switch to side-by-side view

c_VisualizationScript/Visulz_bulkATAC_motifEnrich.R Diff Switch to side-by-side view

c_VisualizationScript/Visulz_bulkATAC_network.R Diff Switch to side-by-side view

c_VisualizationScript/Visulz_bulkATAC_peakAnnoDisp.R Diff Switch to side-by-side view

c_VisualizationScript/Visulz_bulkATAC_trackPlot.R Diff Switch to side-by-side view

c_VisualizationScript/Visulz_bulkRNA_GO.R Diff Switch to side-by-side view

c_VisualizationScript/Visulz_bulkRNA_MAplot.R Diff Switch to side-by-side view

c_VisualizationScript/Visulz_bulkRNA_PCA.R Diff Switch to side-by-side view

c_VisualizationScript/Visulz_bulkRNA_heatmap.R Diff Switch to side-by-side view

c_VisualizationScript/Visulz_bulkRNA_volcano.R Diff Switch to side-by-side view

data/hg19anno.rds

Binary file was added.

data/hg19canonicalTrans.rds

Binary file was added.

data/hg19exon.rds

Binary file was added.

data/hg19geneTSS.bed Diff Switch to side-by-side view

data/hg19trans.rds

Binary file was added.

data/humanHouseKeeping.txt Diff Switch to side-by-side view

data/motifTable.txt Diff Switch to side-by-side view

exampleData/RNA/data/counts.txt Diff Switch to side-by-side view

exampleData/RNA/mid/CiPS_vs_Fib.DEG.csv Diff Switch to side-by-side view

exampleData/RNA/mid/CiPS_vs_Fib.down.GO.csv Diff Switch to side-by-side view

exampleData/RNA/mid/CiPS_vs_Fib.up.GO.csv Diff Switch to side-by-side view

exampleData/RNA/mid/DEGres.rds

Binary file was added.

exampleData/RNA/mid/ES_vs_Fib.DEG.csv Diff Switch to side-by-side view

exampleData/RNA/mid/ES_vs_Fib.down.GO.csv Diff Switch to side-by-side view

<< < 1 2 3 > >> (Page 2 of 3)