a b/mermaidPlot/bulkATACpre.svg
1
<svg id="mermaid-1615918932706" width="100%" xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" height="1367.800048828125" style="max-width: 883.51953125px;" viewBox="0 0 883.51953125 1367.800048828125"><style>#mermaid-1615918932706{font-family:"trebuchet ms",verdana,arial,sans-serif;font-size:18px;fill:#333;}#mermaid-1615918932706 .error-icon{fill:#552222;}#mermaid-1615918932706 .error-text{fill:#552222;stroke:#552222;}#mermaid-1615918932706 .edge-thickness-normal{stroke-width:2px;}#mermaid-1615918932706 .edge-thickness-thick{stroke-width:3.5px;}#mermaid-1615918932706 .edge-pattern-solid{stroke-dasharray:0;}#mermaid-1615918932706 .edge-pattern-dashed{stroke-dasharray:3;}#mermaid-1615918932706 .edge-pattern-dotted{stroke-dasharray:2;}#mermaid-1615918932706 .marker{fill:#333333;stroke:#333333;}#mermaid-1615918932706 .marker.cross{stroke:#333333;}#mermaid-1615918932706 svg{font-family:"trebuchet ms",verdana,arial,sans-serif;font-size:18px;}#mermaid-1615918932706 .label{font-family:"trebuchet ms",verdana,arial,sans-serif;color:#333;}#mermaid-1615918932706 .cluster-label text{fill:#333;}#mermaid-1615918932706 .cluster-label span{color:#333;}#mermaid-1615918932706 .label text,#mermaid-1615918932706 span{fill:#333;color:#333;}#mermaid-1615918932706 .node rect,#mermaid-1615918932706 .node circle,#mermaid-1615918932706 .node ellipse,#mermaid-1615918932706 .node polygon,#mermaid-1615918932706 .node path{fill:#ECECFF;stroke:#9370DB;stroke-width:1px;}#mermaid-1615918932706 .node .label{text-align:center;}#mermaid-1615918932706 .node.clickable{cursor:pointer;}#mermaid-1615918932706 .arrowheadPath{fill:#333333;}#mermaid-1615918932706 .edgePath .path{stroke:#333333;stroke-width:1.5px;}#mermaid-1615918932706 .flowchart-link{stroke:#333333;fill:none;}#mermaid-1615918932706 .edgeLabel{background-color:#ffffff;text-align:center;}#mermaid-1615918932706 .edgeLabel rect{opacity:0.5;background-color:#ffffff;fill:#ffffff;}#mermaid-1615918932706 .cluster rect{fill:#ffffde;stroke:#aaaa33;stroke-width:1px;}#mermaid-1615918932706 .cluster text{fill:#333;}#mermaid-1615918932706 .cluster span{color:#333;}#mermaid-1615918932706 div.mermaidTooltip{position:absolute;text-align:center;max-width:200px;padding:2px;font-family:"trebuchet ms",verdana,arial,sans-serif;font-size:12px;background:hsl(80,100%,96.2745098039%);border:1px solid #aaaa33;border-radius:2px;pointer-events:none;z-index:100;}#mermaid-1615918932706:root{--mermaid-font-family:"trebuchet ms",verdana,arial,sans-serif;}#mermaid-1615918932706 .default &gt; *{stroke-width:2px !important;}#mermaid-1615918932706 .default tspan{!important;}#mermaid-1615918932706 .qc &gt; *{fill:#ffffff !important;}#mermaid-1615918932706 .qc tspan{!important;}#mermaid-1615918932706 flowchart-v2{fill:apa;}</style><g transform="translate(0, 0)"><marker id="flowchart-pointEnd" class="marker flowchart" viewBox="0 0 10 10" refX="9" refY="5" markerUnits="userSpaceOnUse" markerWidth="12" markerHeight="12" orient="auto"><path d="M 0 0 L 10 5 L 0 10 z" class="arrowMarkerPath" style="stroke-width: 1; stroke-dasharray: 1, 0;"></path></marker><marker id="flowchart-pointStart" class="marker flowchart" viewBox="0 0 10 10" refX="0" refY="5" markerUnits="userSpaceOnUse" markerWidth="12" markerHeight="12" orient="auto"><path d="M 0 5 L 10 10 L 10 0 z" class="arrowMarkerPath" style="stroke-width: 1; stroke-dasharray: 1, 0;"></path></marker><marker id="flowchart-circleEnd" class="marker flowchart" viewBox="0 0 10 10" refX="11" refY="5" markerUnits="userSpaceOnUse" markerWidth="11" markerHeight="11" orient="auto"><circle cx="5" cy="5" r="5" class="arrowMarkerPath" style="stroke-width: 1; stroke-dasharray: 1, 0;"></circle></marker><marker id="flowchart-circleStart" class="marker flowchart" viewBox="0 0 10 10" refX="-1" refY="5" markerUnits="userSpaceOnUse" markerWidth="11" markerHeight="11" orient="auto"><circle cx="5" cy="5" r="5" class="arrowMarkerPath" style="stroke-width: 1; stroke-dasharray: 1, 0;"></circle></marker><marker id="flowchart-crossEnd" class="marker cross flowchart" viewBox="0 0 11 11" refX="12" refY="5.2" markerUnits="userSpaceOnUse" markerWidth="11" markerHeight="11" orient="auto"><path d="M 1,1 l 9,9 M 10,1 l -9,9" class="arrowMarkerPath" style="stroke-width: 2; stroke-dasharray: 1, 0;"></path></marker><marker id="flowchart-crossStart" class="marker cross flowchart" viewBox="0 0 11 11" refX="-1" refY="5.2" markerUnits="userSpaceOnUse" markerWidth="11" markerHeight="11" orient="auto"><path d="M 1,1 l 9,9 M 10,1 l -9,9" class="arrowMarkerPath" style="stroke-width: 2; stroke-dasharray: 1, 0;"></path></marker><g class="root"><g class="clusters"></g><g class="edgePaths"><path d="M238.26390186615112,43.79999923706055L225.7533832893382,49.69999933242798C213.24286471252523,55.59999942779541,188.22182755889935,67.39999961853027,175.7113089820864,82.18333307902019C163.20079040527344,96.96666653951009,163.20079040527344,114.73333326975505,163.20079040527344,132.5C163.20079040527344,150.26666673024496,163.20079040527344,168.0333334604899,165.83770017562483,182.90000025431314C168.47460994597623,197.76666704813638,173.74842948667902,209.73333390553793,176.38533925703038,215.71666733423868L179.02224902738178,221.70000076293945" id="L-A-a" class=" edge-thickness-normal edge-pattern-solid flowchart-link LS-A LE-a" style="fill:none;" marker-end="url(#flowchart-pointEnd)"></path><path d="M298.2859930733437,43.79999923706055L305.55929301013504,49.69999933242798C312.8325929469264,55.59999942779541,327.3791928205091,67.39999961853027,334.6524927573004,79.19999980926514C341.9257926940918,91,341.9257926940918,102.80000019073486,341.9257926940918,108.7000002861023L341.9257926940918,114.60000038146973" id="L-A-B" class=" edge-thickness-normal edge-pattern-solid flowchart-link LS-A LE-B" style="fill:none;" marker-end="url(#flowchart-pointEnd)"></path><path d="M311.71744422164096,150.39999961853027L301.7605021732262,156.2999997138977C291.80356012481144,162.19999980926514,271.8896760279819,174,254.74276763638525,185.8833335240682C237.5958592447886,197.76666704813638,223.21592655842485,209.73333390553793,216.025960215243,215.71666733423868L208.83599387206112,221.70000076293945" id="L-B-a" class=" edge-thickness-normal edge-pattern-solid flowchart-link LS-B LE-a" style="fill:none;" marker-end="url(#flowchart-pointEnd)"></path><path d="M355.1115102581478,150.39999961853027L359.45764079129503,156.2999997138977C363.80377132444227,162.19999980926514,372.49603239073673,174,376.842162923884,185.8000005086263C381.18829345703125,197.6000010172526,381.18829345703125,209.40000184377035,381.18829345703125,215.3000022570292L381.18829345703125,221.2000026702881" id="L-B-C" class=" edge-thickness-normal edge-pattern-solid flowchart-link LS-B LE-C" style="fill:none;" marker-end="url(#flowchart-pointEnd)"></path><path d="M381.18829345703125,257.00000190734863L381.18829345703125,262.9000023206075C381.18829345703125,268.8000027338664,381.18829345703125,280.6000035603841,381.18829345703125,292.40000406901044C381.18829345703125,304.2000045776367,381.18829345703125,316.0000047683716,381.18829345703125,321.900004863739L381.18829345703125,327.80000495910645" id="L-C-D" class=" edge-thickness-normal edge-pattern-solid flowchart-link LS-C LE-D" style="fill:none;" marker-end="url(#flowchart-pointEnd)"></path><path d="M381.18829345703125,363.600004196167L381.18829345703125,369.5000042915344C381.18829345703125,375.40000438690186,381.18829345703125,387.2000045776367,381.18829345703125,399.0000047683716C381.18829345703125,410.80000495910645,381.18829345703125,422.6000051498413,381.18829345703125,428.50000524520874L381.18829345703125,434.4000053405762" id="L-D-E" class=" edge-thickness-normal edge-pattern-solid flowchart-link LS-D LE-E" style="fill:none;" marker-end="url(#flowchart-pointEnd)"></path><path d="M381.18829345703125,470.2000045776367L381.18829345703125,476.10000467300415C381.18829345703125,482.0000047683716,381.18829345703125,493.80000495910645,381.18829345703125,505.6000051498413C381.18829345703125,517.4000053405762,381.18829345703125,529.200005531311,381.18829345703125,535.1000056266785L381.18829345703125,541.0000057220459" id="L-E-F" class=" edge-thickness-normal edge-pattern-solid flowchart-link LS-E LE-F" style="fill:none;" marker-end="url(#flowchart-pointEnd)"></path><path d="M350.63781344819193,576.8000049591064L340.5681017829985,582.7000050544739C330.49839011780506,588.6000051498413,310.3589667874182,600.4000053405762,300.37258845555806,612.2833388646444C290.38621012369794,624.1666723887125,290.55287679036456,636.1333392461141,290.63621012369794,642.1166726748148L290.71954345703125,648.1000061035156" id="L-F-f" class=" edge-thickness-normal edge-pattern-solid flowchart-link LS-F LE-f" style="fill:none;" marker-end="url(#flowchart-pointEnd)"></path><path d="M411.73877346587057,576.8000049591064L421.80848513106406,582.7000050544739C431.87819679625744,588.6000051498413,452.0176201266443,600.4000053405762,462.0873317918378,612.2000058492025C472.15704345703125,624.0000063578287,472.15704345703125,635.8000071843466,472.15704345703125,641.7000075976053L472.15704345703125,647.6000080108643" id="L-F-G" class=" edge-thickness-normal edge-pattern-solid flowchart-link LS-F LE-G" style="fill:none;" marker-end="url(#flowchart-pointEnd)"></path><path d="M440.4507942199707,568.774580099289L483.8872521718343,576.0121510046259C527.3237101236979,583.249721909963,614.1966260274252,597.724863720637,657.6330839792887,610.8624350392329C701.0695419311523,624.0000063578287,701.0695419311523,635.8000071843466,701.0695419311523,641.7000075976053L701.0695419311523,647.6000080108643" id="L-F-J" class=" edge-thickness-normal edge-pattern-solid flowchart-link LS-F LE-J" style="fill:none;" marker-end="url(#flowchart-pointEnd)"></path><path d="M215.9000062942505,1274.0000228881836L215.9000062942505,1278.1666895548503C215.9000062942505,1282.3333562215169,215.9000062942505,1290.6666895548503,215.9000062942505,1299.0000228881836C215.9000062942505,1307.3333562215169,215.9000062942505,1315.6666895548503,215.9000062942505,1319.8333562215169L215.9000062942505,1324.0000228881836" id="L-K-M" class=" edge-thickness-normal edge-pattern-solid flowchart-link LS-K LE-M" style="fill:none;" marker-end="url(#flowchart-pointEnd)"></path><path d="M418.38204193115234,675.7538297231998L380.7569109598796,682.9281930572462C343.13177998860675,690.1025563912926,267.8815180460612,704.4512830593853,230.25638707478842,743.0756476332084C192.63125610351562,781.7000122070312,192.63125610351562,844.6000146865845,192.63125610351562,876.0500159263611L192.63125610351562,907.5000171661377" id="L-G-H" class=" edge-thickness-normal edge-pattern-solid flowchart-link LS-G LE-H" style="fill:none;" marker-end="url(#flowchart-pointEnd)"></path><path d="M504.93059388178375,683.4000072479248L515.7330500365775,689.3000076611837C526.5355061913715,695.2000080744425,548.1404185009592,707.0000089009603,558.942874655753,718.8000094095866C569.7453308105469,730.6000099182129,569.7453308105469,742.4000101089478,569.7453308105469,748.3000102043152L569.7453308105469,754.2000102996826" id="L-G-I" class=" edge-thickness-normal edge-pattern-solid flowchart-link LS-G LE-I" style="fill:none;" marker-end="url(#flowchart-pointEnd)"></path><path d="M428.6355779400472,1167.4000225067139L424.605822224667,1173.3000226020813C420.5760665092868,1179.2000226974487,412.51655507852644,1191.0000228881836,387.6146317386267,1202.8000230789185C362.712708398727,1214.6000232696533,320.96837314968786,1226.4000234603882,300.0962055251683,1232.3000235557556L279.22403790064874,1238.200023651123" id="L-I-K" class=" edge-thickness-normal edge-pattern-solid flowchart-link LS-I LE-K" style="fill:none;" marker-end="url(#flowchart-pointEnd)"></path><path d="M192.63125610351562,1014.1000156402588L192.63125610351562,1045.5500168800354C192.63125610351562,1077.000018119812,192.63125610351562,1139.9000205993652,195.20697144785217,1177.2500219345093C197.78268679218874,1214.6000232696533,202.93411748086183,1226.4000234603882,205.50983282519837,1232.3000235557556L208.08554816953492,1238.200023651123" id="L-H-K" class=" edge-thickness-normal edge-pattern-solid flowchart-link LS-H LE-K" style="fill:none;" marker-end="url(#flowchart-pointEnd)"></path><path d="M615.9288627602258,1167.4000225067139L617.2477535388203,1173.3000226020813C618.5666443174149,1179.2000226974487,621.2044258746041,1191.0000228881836,622.5233166531987,1202.8000230789185C623.8422074317932,1214.6000232696533,623.8422074317932,1226.4000234603882,623.8422074317932,1232.3000235557556L623.8422074317932,1238.200023651123" id="L-I-L" class=" edge-thickness-normal edge-pattern-solid flowchart-link LS-I LE-L" style="fill:none;" marker-end="url(#flowchart-pointEnd)"></path></g><g class="edgeLabels"><g class="edgeLabel" transform="translate(163.20079040527344, 132.5)"><g class="label" transform="translate(-26.137500762939453, -10.40000057220459)"><foreignObject width="52.275001525878906" height="20.80000114440918"><div xmlns="http://www.w3.org/1999/xhtml" style="display: inline-block; white-space: nowrap;"><span class="edgeLabel">Fastqc</span></div></foreignObject></g></g><g class="edgeLabel" transform="translate(341.9257926940918, 79.19999980926514)"><g class="label" transform="translate(-52.86249923706055, -10.40000057220459)"><foreignObject width="105.7249984741211" height="20.80000114440918"><div xmlns="http://www.w3.org/1999/xhtml" style="display: inline-block; white-space: nowrap;"><span class="edgeLabel">Trimmomatic</span></div></foreignObject></g></g><g class="edgeLabel" transform="translate(251.97579193115234, 185.80000019073486)"><g class="label" transform="translate(-26.137500762939453, -10.40000057220459)"><foreignObject width="52.275001525878906" height="20.80000114440918"><div xmlns="http://www.w3.org/1999/xhtml" style="display: inline-block; white-space: nowrap;"><span class="edgeLabel">Fastqc</span></div></foreignObject></g></g><g class="edgeLabel" transform="translate(381.18829345703125, 185.80000019073486)"><g class="label" transform="translate(-32.38750076293945, -10.40000057220459)"><foreignObject width="64.7750015258789" height="20.80000114440918"><div xmlns="http://www.w3.org/1999/xhtml" style="display: inline-block; white-space: nowrap;"><span class="edgeLabel">Bowtie2</span></div></foreignObject></g></g><g class="edgeLabel" transform="translate(381.18829345703125, 292.40000438690186)"><g class="label" transform="translate(-36.056251525878906, -10.40000057220459)"><foreignObject width="72.11250305175781" height="20.80000114440918"><div xmlns="http://www.w3.org/1999/xhtml" style="display: inline-block; white-space: nowrap;"><span class="edgeLabel">Samtools</span></div></foreignObject></g></g><g class="edgeLabel" transform="translate(381.18829345703125, 399.0000047683716)"><g class="label" transform="translate(-92.0062484741211, -10.40000057220459)"><foreignObject width="184.0124969482422" height="20.80000114440918"><div xmlns="http://www.w3.org/1999/xhtml" style="display: inline-block; white-space: nowrap;"><span class="edgeLabel">Picard: MarkDuplicates</span></div></foreignObject></g></g><g class="edgeLabel" transform="translate(381.18829345703125, 505.6000051498413)"><g class="label" transform="translate(-69.04375457763672, -10.40000057220459)"><foreignObject width="138.08750915527344" height="20.80000114440918"><div xmlns="http://www.w3.org/1999/xhtml" style="display: inline-block; white-space: nowrap;"><span class="edgeLabel">Samtools + egrep</span></div></foreignObject></g></g><g class="edgeLabel" transform="translate(290.21954345703125, 612.200005531311)"><g class="label" transform="translate(-127.4749984741211, -10.40000057220459)"><foreignObject width="254.9499969482422" height="20.80000114440918"><div xmlns="http://www.w3.org/1999/xhtml" style="display: inline-block; white-space: nowrap;"><span class="edgeLabel">Picard: CollectInsertSizeMetrics</span></div></foreignObject></g></g><g class="edgeLabel" transform="translate(472.15704345703125, 612.200005531311)"><g class="label" transform="translate(-34.462501525878906, -10.40000057220459)"><foreignObject width="68.92500305175781" height="20.80000114440918"><div xmlns="http://www.w3.org/1999/xhtml" style="display: inline-block; white-space: nowrap;"><span class="edgeLabel">bedtools</span></div></foreignObject></g></g><g class="edgeLabel" transform="translate(701.0695419311523, 612.200005531311)"><g class="label" transform="translate(-174.4499969482422, -10.40000057220459)"><foreignObject width="348.8999938964844" height="20.80000114440918"><div xmlns="http://www.w3.org/1999/xhtml" style="display: inline-block; white-space: nowrap;"><span class="edgeLabel">Samtools: index + deepTools: bamCoverage</span></div></foreignObject></g></g><g class="edgeLabel"><g class="label" transform="translate(0, 0)"><foreignObject width="0" height="0"><div xmlns="http://www.w3.org/1999/xhtml" style="display: inline-block; white-space: nowrap;"><span class="edgeLabel"></span></div></foreignObject></g></g><g class="edgeLabel" transform="translate(192.63125610351562, 718.800009727478)"><g class="label" transform="translate(-26.131250381469727, -10.40000057220459)"><foreignObject width="52.26250076293945" height="20.80000114440918"><div xmlns="http://www.w3.org/1999/xhtml" style="display: inline-block; white-space: nowrap;"><span class="edgeLabel">MACS2</span></div></foreignObject></g></g><g class="edgeLabel" transform="translate(569.7453308105469, 718.800009727478)"><g class="label" transform="translate(-26.131250381469727, -10.40000057220459)"><foreignObject width="52.26250076293945" height="20.80000114440918"><div xmlns="http://www.w3.org/1999/xhtml" style="display: inline-block; white-space: nowrap;"><span class="edgeLabel">MACS2</span></div></foreignObject></g></g><g class="edgeLabel" transform="translate(404.4570436477661, 1202.8000230789185)"><g class="label" transform="translate(-13.268750190734863, -10.40000057220459)"><foreignObject width="26.537500381469727" height="20.80000114440918"><div xmlns="http://www.w3.org/1999/xhtml" style="display: inline-block; white-space: nowrap;"><span class="edgeLabel">IDR</span></div></foreignObject></g></g><g class="edgeLabel" transform="translate(192.63125610351562, 1202.8000230789185)"><g class="label" transform="translate(-13.268750190734863, -10.40000057220459)"><foreignObject width="26.537500381469727" height="20.80000114440918"><div xmlns="http://www.w3.org/1999/xhtml" style="display: inline-block; white-space: nowrap;"><span class="edgeLabel">IDR</span></div></foreignObject></g></g><g class="edgeLabel" transform="translate(623.8422074317932, 1202.8000230789185)"><g class="label" transform="translate(-74.92500305175781, -10.40000057220459)"><foreignObject width="149.85000610351562" height="20.80000114440918"><div xmlns="http://www.w3.org/1999/xhtml" style="display: inline-block; white-space: nowrap;"><span class="edgeLabel">bedGraphToBigWig</span></div></foreignObject></g></g></g><g class="nodes"><g class="root" transform="translate(419.26251220703125, 746.2000102996826)"><g class="clusters"><g class="cluster default" id="I"><rect style="" rx="0" ry="0" x="8" y="8" width="284.96562480926514" height="413.1999931335449"></rect><g class="cluster-label" transform="translate(32.25155782699585, 13)"><foreignObject width="236.46250915527344" height="20.80000114440918"><div xmlns="http://www.w3.org/1999/xhtml" style="display: inline-block; white-space: nowrap;"><span class="nodeLabel">Call peak for grouped sample</span></div></foreignObject></g></g></g><g class="edgePaths"><path d="M100.63180571745299,310.3999938964844L99.06556726454416,314.56666056315106C97.49932881163534,318.7333272298177,94.36685190581767,327.06666056315106,92.80061345290885,335.3999938964844C91.234375,343.7333272298177,91.234375,352.06666056315106,91.234375,356.2333272298177L91.234375,360.3999938964844" id="L-Ia-Ia_res1" class=" edge-thickness-normal edge-pattern-solid flowchart-link LS-Ia LE-Ia_res1" style="fill:none;" marker-end="url(#flowchart-pointEnd)"></path><path d="M204.90569466401672,310.3999938964844L206.47193311692556,314.56666056315106C208.0381715698344,318.7333272298177,211.17064847565203,327.06666056315106,212.7368869285609,335.3999938964844C214.30312538146973,343.7333272298177,214.30312538146973,352.06666056315106,214.30312538146973,356.2333272298177L214.30312538146973,360.3999938964844" id="L-Ia-Ia_res2" class=" edge-thickness-normal edge-pattern-solid flowchart-link LS-Ia LE-Ia_res2" style="fill:none;" marker-end="url(#flowchart-pointEnd)"></path></g><g class="edgeLabels"><g class="edgeLabel"><g class="label" transform="translate(0, 0)"><foreignObject width="0" height="0"><div xmlns="http://www.w3.org/1999/xhtml" style="display: inline-block; white-space: nowrap;"><span class="edgeLabel"></span></div></foreignObject></g></g><g class="edgeLabel"><g class="label" transform="translate(0, 0)"><foreignObject width="0" height="0"><div xmlns="http://www.w3.org/1999/xhtml" style="display: inline-block; white-space: nowrap;"><span class="edgeLabel"></span></div></foreignObject></g></g></g><g class="nodes"><g class="root" transform="translate(89.40625095367432, 25)"><g class="clusters"><g class="cluster qc qc" id="Ia"><rect style="" rx="0" ry="0" x="8" y="8" width="110.7249984741211" height="277.39999771118164"></rect><g class="cluster-label" transform="translate(40.58124923706055, 13)"><foreignObject width="45.5625" height="20.80000114440918"><div xmlns="http://www.w3.org/1999/xhtml" style="display: inline-block; white-space: nowrap;"><span class="nodeLabel">group</span></div></foreignObject></g></g></g><g class="edgePaths"></g><g class="edgeLabels"></g><g class="nodes"><g class="node default default" id="flowchart-Ia_1-5645" transform="translate(63.36249923706055, 60.89999961853027)"><rect class="basic label-container" style="" rx="5" ry="5" x="-30.36250114440918" y="-17.90000057220459" width="60.72500228881836" height="35.80000114440918"></rect><g class="label" style="" transform="translate(-22.86250114440918, -10.40000057220459)"><foreignObject width="45.72500228881836" height="20.80000114440918"><div xmlns="http://www.w3.org/1999/xhtml" style="display: inline-block; white-space: nowrap;"><span class="nodeLabel">rep_1</span></div></foreignObject></g></g><g class="node default default" id="flowchart-Ia_2-5646" transform="translate(63.36249923706055, 146.69999885559082)"><rect class="basic label-container" style="" rx="5" ry="5" x="-30.36250114440918" y="-17.90000057220459" width="60.72500228881836" height="35.80000114440918"></rect><g class="label" style="" transform="translate(-22.86250114440918, -10.40000057220459)"><foreignObject width="45.72500228881836" height="20.80000114440918"><div xmlns="http://www.w3.org/1999/xhtml" style="display: inline-block; white-space: nowrap;"><span class="nodeLabel">rep_2</span></div></foreignObject></g></g><g class="node default default" id="flowchart-Ia_n-5647" transform="translate(63.36249923706055, 232.49999809265137)"><rect class="basic label-container" style="" rx="5" ry="5" x="-17.418749809265137" y="-17.90000057220459" width="34.83749961853027" height="35.80000114440918"></rect><g class="label" style="" transform="translate(-9.918749809265137, -10.40000057220459)"><foreignObject width="19.837499618530273" height="20.80000114440918"><div xmlns="http://www.w3.org/1999/xhtml" style="display: inline-block; white-space: nowrap;"><span class="nodeLabel">...</span></div></foreignObject></g></g></g></g><g class="node default default" id="flowchart-Ia_res1-5649" transform="translate(91.234375, 378.29999351501465)"><rect class="basic label-container" style="" rx="5" ry="5" x="-41.10625076293945" y="-17.90000057220459" width="82.2125015258789" height="35.80000114440918"></rect><g class="label" style="" transform="translate(-33.60625076293945, -10.40000057220459)"><foreignObject width="67.2125015258789" height="20.80000114440918"><div xmlns="http://www.w3.org/1999/xhtml" style="display: inline-block; white-space: nowrap;"><span class="nodeLabel">(.nPeak)</span></div></foreignObject></g></g><g class="node default default" id="flowchart-Ia_res2-5651" transform="translate(214.30312538146973, 378.29999351501465)"><rect class="basic label-container" style="" rx="5" ry="5" x="-31.962499618530273" y="-17.90000057220459" width="63.92499923706055" height="35.80000114440918"></rect><g class="label" style="" transform="translate(-24.462499618530273, -10.40000057220459)"><foreignObject width="48.92499923706055" height="20.80000114440918"><div xmlns="http://www.w3.org/1999/xhtml" style="display: inline-block; white-space: nowrap;"><span class="nodeLabel">(.bdg)</span></div></foreignObject></g></g></g></g><g class="root" transform="translate(0, 899.5000171661377)"><g class="clusters"><g class="cluster default" id="H"><rect style="" rx="0" ry="0" x="8" y="8" width="369.2625045776367" height="106.5999984741211"></rect><g class="cluster-label" transform="translate(84.93750381469727, 13)"><foreignObject width="215.3874969482422" height="20.80000114440918"><div xmlns="http://www.w3.org/1999/xhtml" style="display: inline-block; white-space: nowrap;"><span class="nodeLabel">Call peak for every sample</span></div></foreignObject></g></g></g><g class="edgePaths"></g><g class="edgeLabels"></g><g class="nodes"><g class="node default" id="flowchart-Ha_1-5642" transform="translate(84.10625076293945, 61.29999923706055)"><rect class="basic label-container" style="" rx="5" ry="5" x="-41.10625076293945" y="-28.30000114440918" width="82.2125015258789" height="56.60000228881836"></rect><g class="label" style="" transform="translate(-33.60625076293945, -20.80000114440918)"><foreignObject width="67.2125015258789" height="41.60000228881836"><div xmlns="http://www.w3.org/1999/xhtml" style="display: inline-block; white-space: nowrap;"><span class="nodeLabel">rep_1<br/>(.nPeak)</span></div></foreignObject></g></g><g class="node default" id="flowchart-Ha_2-5643" transform="translate(216.31875228881836, 61.29999923706055)"><rect class="basic label-container" style="" rx="5" ry="5" x="-41.10625076293945" y="-28.30000114440918" width="82.2125015258789" height="56.60000228881836"></rect><g class="label" style="" transform="translate(-33.60625076293945, -20.80000114440918)"><foreignObject width="67.2125015258789" height="41.60000228881836"><div xmlns="http://www.w3.org/1999/xhtml" style="display: inline-block; white-space: nowrap;"><span class="nodeLabel">rep_2<br/>(.nPeak)</span></div></foreignObject></g></g><g class="node default" id="flowchart-Ha_n-5644" transform="translate(324.84375381469727, 61.29999923706055)"><rect class="basic label-container" style="" rx="5" ry="5" x="-17.418749809265137" y="-17.90000057220459" width="34.83749961853027" height="35.80000114440918"></rect><g class="label" style="" transform="translate(-9.918749809265137, -10.40000057220459)"><foreignObject width="19.837499618530273" height="20.80000114440918"><div xmlns="http://www.w3.org/1999/xhtml" style="display: inline-block; white-space: nowrap;"><span class="nodeLabel">...</span></div></foreignObject></g></g></g></g><g class="node default default" id="flowchart-A-5622" transform="translate(276.2195415496826, 25.899999618530273)"><rect class="basic label-container" style="" rx="5" ry="5" x="-89.91875457763672" y="-17.90000057220459" width="179.83750915527344" height="35.80000114440918"></rect><g class="label" style="" transform="translate(-82.41875457763672, -10.40000057220459)"><foreignObject width="164.83750915527344" height="20.80000114440918"><div xmlns="http://www.w3.org/1999/xhtml" style="display: inline-block; white-space: nowrap;"><span class="nodeLabel">Raw data (.fastq.gz)</span></div></foreignObject></g></g><g class="node default qc" id="flowchart-a-5623" transform="translate(186.26954078674316, 239.10000228881836)"><polygon points="8.950000286102295,0 146.650004863739,0 155.6000051498413,-17.90000057220459 146.650004863739,-35.80000114440918 8.950000286102295,-35.80000114440918 0,-17.90000057220459" class="label-container" transform="translate(-77.80000257492065,17.90000057220459)" style=""></polygon><g class="label" style="" transform="translate(-61.35000228881836, -10.40000057220459)"><foreignObject width="122.70000457763672" height="20.80000114440918"><div xmlns="http://www.w3.org/1999/xhtml" style="display: inline-block; white-space: nowrap;"><span class="nodeLabel">Quality Control</span></div></foreignObject></g></g><g class="node default default" id="flowchart-B-5625" transform="translate(341.9257926940918, 132.5)"><rect class="basic label-container" style="" rx="5" ry="5" x="-70.2750015258789" y="-17.90000057220459" width="140.5500030517578" height="35.80000114440918"></rect><g class="label" style="" transform="translate(-62.775001525878906, -10.40000057220459)"><foreignObject width="125.55000305175781" height="20.80000114440918"><div xmlns="http://www.w3.org/1999/xhtml" style="display: inline-block; white-space: nowrap;"><span class="nodeLabel">Trim (.fastq.gz)</span></div></foreignObject></g></g><g class="node default default" id="flowchart-C-5629" transform="translate(381.18829345703125, 239.10000228881836)"><rect class="basic label-container" style="" rx="5" ry="5" x="-52.10000228881836" y="-17.90000057220459" width="104.20000457763672" height="35.80000114440918"></rect><g class="label" style="" transform="translate(-44.60000228881836, -10.40000057220459)"><foreignObject width="89.20000457763672" height="20.80000114440918"><div xmlns="http://www.w3.org/1999/xhtml" style="display: inline-block; white-space: nowrap;"><span class="nodeLabel">Map (.sam)</span></div></foreignObject></g></g><g class="node default default" id="flowchart-D-5631" transform="translate(381.18829345703125, 345.7000045776367)"><rect class="basic label-container" style="" rx="5" ry="5" x="-53.56875228881836" y="-17.90000057220459" width="107.13750457763672" height="35.80000114440918"></rect><g class="label" style="" transform="translate(-46.06875228881836, -10.40000057220459)"><foreignObject width="92.13750457763672" height="20.80000114440918"><div xmlns="http://www.w3.org/1999/xhtml" style="display: inline-block; white-space: nowrap;"><span class="nodeLabel">Sort (.bam)</span></div></foreignObject></g></g><g class="node default default" id="flowchart-E-5633" transform="translate(381.18829345703125, 452.30000495910645)"><rect class="basic label-container" style="" rx="5" ry="5" x="-93" y="-17.90000057220459" width="186" height="35.80000114440918"></rect><g class="label" style="" transform="translate(-85.5, -10.40000057220459)"><foreignObject width="171" height="20.80000114440918"><div xmlns="http://www.w3.org/1999/xhtml" style="display: inline-block; white-space: nowrap;"><span class="nodeLabel">Deduplication (.bam)</span></div></foreignObject></g></g><g class="node default default" id="flowchart-F-5635" transform="translate(381.18829345703125, 558.9000053405762)"><rect class="basic label-container" style="" rx="5" ry="5" x="-59.26250076293945" y="-17.90000057220459" width="118.5250015258789" height="35.80000114440918"></rect><g class="label" style="" transform="translate(-51.76250076293945, -10.40000057220459)"><foreignObject width="103.5250015258789" height="20.80000114440918"><div xmlns="http://www.w3.org/1999/xhtml" style="display: inline-block; white-space: nowrap;"><span class="nodeLabel">Filter (.bam)</span></div></foreignObject></g></g><g class="node default qc" id="flowchart-f-5637" transform="translate(290.21954345703125, 665.5000076293945)"><polygon points="8.950000286102295,0 106.23749876022339,0 115.18749904632568,-17.90000057220459 106.23749876022339,-35.80000114440918 8.950000286102295,-35.80000114440918 0,-17.90000057220459" class="label-container" transform="translate(-57.59374952316284,17.90000057220459)" style=""></polygon><g class="label" style="" transform="translate(-41.14374923706055, -10.40000057220459)"><foreignObject width="82.2874984741211" height="20.80000114440918"><div xmlns="http://www.w3.org/1999/xhtml" style="display: inline-block; white-space: nowrap;"><span class="nodeLabel">Insert size</span></div></foreignObject></g></g><g class="node default default" id="flowchart-G-5639" transform="translate(472.15704345703125, 665.5000076293945)"><rect class="basic label-container" style="" rx="5" ry="5" x="-53.775001525878906" y="-17.90000057220459" width="107.55000305175781" height="35.80000114440918"></rect><g class="label" style="" transform="translate(-46.275001525878906, -10.40000057220459)"><foreignObject width="92.55000305175781" height="20.80000114440918"><div xmlns="http://www.w3.org/1999/xhtml" style="display: inline-block; white-space: nowrap;"><span class="nodeLabel">Shift (.bed)</span></div></foreignObject></g></g><g class="node default default" id="flowchart-J-5641" transform="translate(701.0695419311523, 665.5000076293945)"><rect class="basic label-container" style="" rx="5" ry="5" x="-53.29999923706055" y="-17.90000057220459" width="106.5999984741211" height="35.80000114440918"></rect><g class="label" style="" transform="translate(-45.79999923706055, -10.40000057220459)"><foreignObject width="91.5999984741211" height="20.80000114440918"><div xmlns="http://www.w3.org/1999/xhtml" style="display: inline-block; white-space: nowrap;"><span class="nodeLabel">Track (.bw)</span></div></foreignObject></g></g><g class="node default default" id="flowchart-K-5657" transform="translate(215.9000062942505, 1256.1000232696533)"><rect class="basic label-container" style="" rx="5" ry="5" x="-118.64375305175781" y="-17.90000057220459" width="237.28750610351562" height="35.80000114440918"></rect><g class="label" style="" transform="translate(-111.14375305175781, -10.40000057220459)"><foreignObject width="222.28750610351562" height="20.80000114440918"><div xmlns="http://www.w3.org/1999/xhtml" style="display: inline-block; white-space: nowrap;"><span class="nodeLabel">Consensus peakset (.nPeak)</span></div></foreignObject></g></g><g class="node default default" id="flowchart-L-5661" transform="translate(623.8422074317932, 1256.1000232696533)"><rect class="basic label-container" style="" rx="5" ry="5" x="-53.29999923706055" y="-17.90000057220459" width="106.5999984741211" height="35.80000114440918"></rect><g class="label" style="" transform="translate(-45.79999923706055, -10.40000057220459)"><foreignObject width="91.5999984741211" height="20.80000114440918"><div xmlns="http://www.w3.org/1999/xhtml" style="display: inline-block; white-space: nowrap;"><span class="nodeLabel">Track (.bw)</span></div></foreignObject></g></g><g class="node default" id="flowchart-M-5663" transform="translate(215.9000062942505, 1341.9000225067139)"><rect class="basic label-container" style="" rx="5" ry="5" x="-91.3125" y="-17.90000057220459" width="182.625" height="35.80000114440918"></rect><g class="label" style="" transform="translate(-83.8125, -10.40000057220459)"><foreignObject width="167.625" height="20.80000114440918"><div xmlns="http://www.w3.org/1999/xhtml" style="display: inline-block; white-space: nowrap;"><span class="nodeLabel">Downstream analysis</span></div></foreignObject></g></g></g></g></g></svg>