setCMD <- function(cmd, dir = ".", sepN = 1, conf = cmdConf) {
idx <- seq_along(cmd) %% sepN
idx[idx == 0] <- sepN
cmdList <- tapply(cmd, idx, c)
cmdHead <- glue(cmdConf$head, .trim = F)
cmdList <- map2(cmdHead, cmdList, ~ c(.x, .y))
names(cmdList) <- 1:length(cmdList)
iwalk(cmdList, ~ write.table(
.x,
glue("{dir}/batch{.y}.sh"),
sep = "\n", quote = F, row.names = F, col.names = F,
eol = "\n"
))
submit <- glue(
"{cmdConf$prefix} {dir}/batch{names(cmdList)}.sh {cmdConf$suffix}"
)
write.table(
c("#!/bin/bash", submit),
glue("{dir}/submit.sh"),
sep = "\n", quote = F, row.names = F, col.names = F,
eol = "\n"
)
system(glue("ls -lh {dir}"))
}