Protocols-4pub / Git / Commit [d06c2b]

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Commit [d06c2b]

Initial commit

Authored by: AlyssaS 2025-04-19

Browse code at this revision

Parent: [be78b7]

Child: [314984]

1 2 3 > >> (Page 1 of 3)

added	.gitignore
added	LICENSE
added	README.md
added	_config.yml
added	a_PreprocessPipeline/BSfilter.R
added	a_PreprocessPipeline/ChIPpre.R
added	a_PreprocessPipeline/WGBSpre.R
added	a_PreprocessPipeline/WGS&WESpre.R
added	a_PreprocessPipeline/bulkATACpre.R
added	a_PreprocessPipeline/bulkATACpre_conf.json
added	a_PreprocessPipeline/bulkRNApre.R
added	a_PreprocessPipeline/bulkRNApre_conf.json
added	a_PreprocessPipeline/cmd_conf.json
added	a_PreprocessPipeline/utils.R
added	b_DownstreamAnalysisScript/bulkATACana_1_QC.R
added	b_DownstreamAnalysisScript/bulkATACana_2_loadCount.R
added	b_DownstreamAnalysisScript/bulkATACana_3_annotatePeak.R
added	b_DownstreamAnalysisScript/bulkATACana_4_GO.R
added	b_DownstreamAnalysisScript/bulkATACana_5_peakTF.R
added	b_DownstreamAnalysisScript/bulkRNAana_1_loadCount.R
added	b_DownstreamAnalysisScript/bulkRNAana_2a_DESeq.R
added	b_DownstreamAnalysisScript/bulkRNAana_2b_DEseq2.R
added	b_DownstreamAnalysisScript/bulkRNAana_3_GO.R
added	b_DownstreamAnalysisScript/downloadData.R
added	c_VisualizationScript/Visulz_bulkATAC_PCA.R

.gitignore Diff Switch to side-by-side view

LICENSE Diff Switch to side-by-side view

README.md Diff Switch to side-by-side view

_config.yml Diff Switch to side-by-side view

a_PreprocessPipeline/BSfilter.R Diff Switch to side-by-side view

a_PreprocessPipeline/ChIPpre.R Diff Switch to side-by-side view

a_PreprocessPipeline/WGBSpre.R Diff Switch to side-by-side view

a_PreprocessPipeline/WGS&WESpre.R Diff Switch to side-by-side view

a_PreprocessPipeline/bulkATACpre.R Diff Switch to side-by-side view

a_PreprocessPipeline/bulkATACpre_conf.json Diff Switch to side-by-side view

a_PreprocessPipeline/bulkRNApre.R Diff Switch to side-by-side view

a_PreprocessPipeline/bulkRNApre_conf.json Diff Switch to side-by-side view

a_PreprocessPipeline/cmd_conf.json Diff Switch to side-by-side view

a_PreprocessPipeline/utils.R Diff Switch to side-by-side view

b_DownstreamAnalysisScript/bulkATACana_1_QC.R Diff Switch to side-by-side view

b_DownstreamAnalysisScript/bulkATACana_2_loadCount.R Diff Switch to side-by-side view

b_DownstreamAnalysisScript/bulkATACana_3_annotatePeak.R Diff Switch to side-by-side view

b_DownstreamAnalysisScript/bulkATACana_4_GO.R Diff Switch to side-by-side view

b_DownstreamAnalysisScript/bulkATACana_5_peakTF.R Diff Switch to side-by-side view

b_DownstreamAnalysisScript/bulkRNAana_1_loadCount.R Diff Switch to side-by-side view

b_DownstreamAnalysisScript/bulkRNAana_2a_DESeq.R Diff Switch to side-by-side view

b_DownstreamAnalysisScript/bulkRNAana_2b_DEseq2.R Diff Switch to side-by-side view

b_DownstreamAnalysisScript/bulkRNAana_3_GO.R Diff Switch to side-by-side view

b_DownstreamAnalysisScript/downloadData.R Diff Switch to side-by-side view

c_VisualizationScript/Visulz_bulkATAC_PCA.R Diff Switch to side-by-side view

1 2 3 > >> (Page 1 of 3)