[314984]: / exampleData / RNA / mid / CiPS_vs_Fib.down.GO.csv

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# ID Description GeneRatio BgRatio pvalue p.adjust qvalue geneID Count
1 GO:0030198 GO:0030198 extracellular matrix organization 83/793 314/18614 9.17987373748589e-43 2.99555391379335e-39 2.09015608693949e-39 COL16A1/CTSK/OLFML2B/DDR2/DPT/FMOD/TGFB2/AGT/EMILIN1/CYP1B1/LOXL3/FAP/COL3A1/COL5A2/COL7A1/COL8A1/ABI3BP/CCDC80/PTX3/PDGFRA/EGFLAM/ADAMTS6/LOX/TGFBI/ADAMTS2/FOXF2/FOXC1/ADTRP/TNXB/COL12A1/LAMA2/IL6/AEBP1/ELN/COL1A2/PLOD3/CAV2/CAV1/CSGALNACT1/BMP1/LOXL2/SULF1/EXT1/HAS2/ADAMTSL1/B4GALT1/ECM2/COL15A1/ENG/COL5A1/ADAMTS14/LOXL4/KAZALD1/CREB3L1/EFEMP2/MMP8/MMP1/MMP3/LUM/NTN4/POSTN/RGCC/GAS6/MMP14/NID2/FLRT2/FBLN5/GREM1/ANXA2/LOXL1/MMP2/FOXC2/ZNF469/MFAP4/COL1A1/CST3/COL5A3/COMP/TGFB1/BCL3/ADAMTS1/ADAMTS5/RUNX1 83
2 GO:0043062 GO:0043062 extracellular structure organization 83/793 315/18614 1.19870104593571e-42 2.99555391379335e-39 2.09015608693949e-39 COL16A1/CTSK/OLFML2B/DDR2/DPT/FMOD/TGFB2/AGT/EMILIN1/CYP1B1/LOXL3/FAP/COL3A1/COL5A2/COL7A1/COL8A1/ABI3BP/CCDC80/PTX3/PDGFRA/EGFLAM/ADAMTS6/LOX/TGFBI/ADAMTS2/FOXF2/FOXC1/ADTRP/TNXB/COL12A1/LAMA2/IL6/AEBP1/ELN/COL1A2/PLOD3/CAV2/CAV1/CSGALNACT1/BMP1/LOXL2/SULF1/EXT1/HAS2/ADAMTSL1/B4GALT1/ECM2/COL15A1/ENG/COL5A1/ADAMTS14/LOXL4/KAZALD1/CREB3L1/EFEMP2/MMP8/MMP1/MMP3/LUM/NTN4/POSTN/RGCC/GAS6/MMP14/NID2/FLRT2/FBLN5/GREM1/ANXA2/LOXL1/MMP2/FOXC2/ZNF469/MFAP4/COL1A1/CST3/COL5A3/COMP/TGFB1/BCL3/ADAMTS1/ADAMTS5/RUNX1 83
3 GO:0045229 GO:0045229 external encapsulating structure organization 83/793 317/18614 2.03697757197363e-42 3.39360463490807e-39 2.36789708629777e-39 COL16A1/CTSK/OLFML2B/DDR2/DPT/FMOD/TGFB2/AGT/EMILIN1/CYP1B1/LOXL3/FAP/COL3A1/COL5A2/COL7A1/COL8A1/ABI3BP/CCDC80/PTX3/PDGFRA/EGFLAM/ADAMTS6/LOX/TGFBI/ADAMTS2/FOXF2/FOXC1/ADTRP/TNXB/COL12A1/LAMA2/IL6/AEBP1/ELN/COL1A2/PLOD3/CAV2/CAV1/CSGALNACT1/BMP1/LOXL2/SULF1/EXT1/HAS2/ADAMTSL1/B4GALT1/ECM2/COL15A1/ENG/COL5A1/ADAMTS14/LOXL4/KAZALD1/CREB3L1/EFEMP2/MMP8/MMP1/MMP3/LUM/NTN4/POSTN/RGCC/GAS6/MMP14/NID2/FLRT2/FBLN5/GREM1/ANXA2/LOXL1/MMP2/FOXC2/ZNF469/MFAP4/COL1A1/CST3/COL5A3/COMP/TGFB1/BCL3/ADAMTS1/ADAMTS5/RUNX1 83
4 GO:0030199 GO:0030199 collagen fibril organization 32/793 64/18614 3.7838705369441e-27 4.72794623591165e-24 3.29893765497258e-24 DDR2/DPT/FMOD/TGFB2/EMILIN1/CYP1B1/LOXL3/COL3A1/COL5A2/LOX/ADAMTS2/FOXC1/TNXB/COL12A1/AEBP1/COL1A2/PLOD3/BMP1/LOXL2/EXT1/COL5A1/ADAMTS14/LOXL4/EFEMP2/LUM/GREM1/ANXA2/LOXL1/FOXC2/COL1A1/COL5A3/COMP 32
5 GO:0001503 GO:0001503 ossification 73/793 429/18614 1.35150109454133e-24 1.35096049410351e-21 9.42636447624301e-22 CSF1/ECM1/CTSK/THBS3/DDR2/PTGS2/CRIM1/SLC8A1/FHL2/TNFAIP6/COL5A2/IGFBP5/TWIST2/PPARG/WNT5A/BMPR1B/SGMS2/HAND2/VEGFC/ANKH/PTGER4/IL6ST/MEF2C/LOX/FBN2/PDLIM7/FOXC1/SCUBE3/RUNX2/TWIST1/IL6/IGFBP3/EGFR/HGF/FZD1/COL1A2/CSGALNACT1/BMP1/CEBPD/SNAI2/PENK/OSR2/CTHRC1/EXT1/ASPN/TNC/DKK1/SRGN/KAZALD1/IGF2/CREB3L1/LTBP3/TCIRG1/MGP/VDR/TMEM119/MMP14/GREM1/ITGA11/SEMA7A/MMP2/CDH11/FOXC2/COL1A1/MRC2/GDF5/ZHX3/FSTL3/JUNB/COMP/CLEC11A/MAPK11/COL6A1 73
6 GO:0032963 GO:0032963 collagen metabolic process 37/793 108/18614 5.49713521638581e-24 4.57911363524938e-21 3.19508929331337e-21 CTSK/DDR2/EMILIN1/FAP/MIR145/PDGFRB/ADAMTS2/TNXB/TRAM2/IL6/INHBA/COL1A2/PCOLCE/PLOD3/MIR29A/CTSB/CTSL/ENG/COL5A1/VIM/ADAMTS14/CREB3L1/MMP8/MMP1/MMP3/RGCC/MMP14/TGFB3/MMP2/MFAP4/COL1A1/MRC2/CYGB/CST3/TGFB1/RCN3/RUNX1 37
7 GO:0048705 GO:0048705 skeletal system morphogenesis 52/793 229/18614 1.03398936557118e-23 7.38268407017819e-21 5.1512883731388e-21 TBX15/THBS3/PRRX1/PAPPA2/DLX2/HOXD8/HOXD3/COL3A1/TGFBR2/MSX1/PDGFRA/BMPR1B/HHIP/GHR/MEF2C/FBN2/FOXC1/RUNX2/TWIST1/HOXA3/HOXA4/HOXA5/HOXA9/HOXA11/SFRP4/CSGALNACT1/BMP1/OSR2/EXT1/HAS2/ZEB1/ARID5B/ALX4/LTBP3/MGP/HOXC9/TMEM119/MMP14/SIX1/TGFB3/GSC/GREM1/MMP2/FOXC2/HOXB2/HOXB3/HOXB4/HOXB5/HOXB7/HOXB9/COL1A1/COMP 52
8 GO:0001667 GO:0001667 ameboidal-type cell migration 75/793 496/18614 5.16479588959181e-22 3.22670623202248e-19 2.25144326081811e-19 JUN/GADD45A/DDR2/PTGS2/TGFB2/DUSP10/AGT/CYP1B1/SLC8A1/PRKCE/ATOH8/ZEB2/FAP/ITGA4/FN1/TNS1/SCG2/SP100/PPARG/TGFBR2/WNT5A/GATA2/SLIT2/PITX2/HAND2/VEGFC/GDNF/MEF2C/MIR145/SPARC/ADTRP/DAAM2/TPBG/MEOX2/TWIST1/BMPER/HSPB1/SEMA3C/MIR29A/TIMP1/LOXL2/ADAM9/SNAI2/ANGPT1/ENPP2/HAS2/PRSS3/ANXA1/KLF4/NRP1/VSTM4/ARID5B/ACTA2/LPXN/CD248/ARHGDIB/ACVRL1/DCN/STARD13/RGCC/CLEC14A/GREM1/THBS1/FGF7/SEMA7A/CDH13/FOXC2/SERPINF1/CYGB/PTPRM/CCBE1/RIN2/SYDE1/TGFB1/RRAS 75
9 GO:0061448 GO:0061448 connective tissue development 54/793 275/18614 2.0663486568501e-21 1.14751228743742e-18 8.00679894753727e-19 CSF1/ECM1/CTSK/THBS3/PRRX1/CHI3L1/EFEMP1/DLX2/HOXD3/COL3A1/PPARG/TGFBR2/WNT5A/MSX1/BMPR1B/HAND2/GHR/FOXD1/MEF2C/LOX/PITX1/TGFBI/PDGFRB/RUNX2/HOXA3/HOXA5/HOXA11/TIMP1/BGN/CSGALNACT1/BMP1/LOXL2/SNAI2/SULF1/GDF6/OSR2/EXT1/OGN/COL5A1/ZEB1/ARID5B/ACTA2/CD44/LTBP3/WNT5B/MGP/ACVRL1/GREM1/FOXC2/HOXB3/COL1A1/GDF5/COMP/TGFB1 54
10 GO:0007178 GO:0007178 transmembrane receptor protein serine/threonine kinase signaling pathway 65/793 398/18614 5.26163060063953e-21 2.62976297419964e-18 1.83492443999145e-18 NBL1/JUN/FMOD/TGFB2/GREM2/EMILIN1/LTBP1/CRIM1/ATOH8/ZEB2/TNFAIP6/COL3A1/PPARG/TGFBR2/WNT5A/MSX1/HTRA3/BMPR1B/DAB2/FOXD1/LOX/FBN2/HFE/TNXB/SCUBE3/RUNX2/CD109/BMPER/SFRP4/INHBA/FZD1/COL1A2/CAV2/CAV1/GATA4/ZNF703/ADAM9/SULF1/GDF6/EXT1/CDKN2B/ASPN/ENG/VIM/ZEB1/DKK1/HTRA1/DKK3/LPXN/LTBP3/LRRC32/ACVRL1/LTBP2/TGFB3/GREM1/THBS1/FBN1/VASN/TGFB1I1/GATA6/GDF5/FSTL3/GDF15/COMP/TGFB1 65
11 GO:0051216 GO:0051216 cartilage development 45/793 203/18614 3.13708198180634e-20 1.42537597682437e-17 9.94560057964059e-18 ECM1/CTSK/THBS3/PRRX1/CHI3L1/EFEMP1/DLX2/HOXD3/COL3A1/TGFBR2/WNT5A/MSX1/BMPR1B/HAND2/GHR/MEF2C/PITX1/TGFBI/RUNX2/HOXA3/HOXA5/HOXA11/TIMP1/BGN/CSGALNACT1/BMP1/LOXL2/SNAI2/SULF1/GDF6/OSR2/EXT1/OGN/ZEB1/CD44/LTBP3/WNT5B/MGP/ACVRL1/GREM1/HOXB3/COL1A1/GDF5/COMP/TGFB1 45
12 GO:0071559 GO:0071559 response to transforming growth factor beta 51/793 280/18614 8.49681928911142e-19 3.53892523391491e-16 2.46929493901984e-16 JUN/CTSK/DDR2/FMOD/TGFB2/EMILIN1/LTBP1/ZEB2/COL3A1/PPARG/TGFBR2/WNT5A/HTRA3/DAB2/MEF2C/LOX/FBN2/NR3C1/TNXB/CD109/COL1A2/CAV2/CAV1/WNT2/MXRA5/ZNF703/ADAM9/PENK/CDKN2B/ASPN/ENG/ZEB1/ACTA2/ANKRD1/HTRA1/DKK3/LPXN/LTBP3/LRRC32/ACVRL1/LTBP2/TGFB3/THBS1/FBN1/VASN/TGFB1I1/ZFHX3/COL1A1/GDF5/GDF15/TGFB1 51
13 GO:0090287 GO:0090287 regulation of cellular response to growth factor stimulus 56/793 345/18614 4.08511049854793e-18 1.46377954623186e-15 1.02135625548454e-15 NBL1/AGT/GREM2/EMILIN1/LTBP1/CRIM1/ZEB2/TNFAIP6/GPC1/PPARG/WNT5A/MSX1/HTRA3/SLIT2/HHIP/VEGFC/DAB2/FOXD1/LOX/FBN2/TNXB/SCUBE3/RUNX2/CD109/BMPER/SFRP4/FZD1/CAV2/CAV1/GATA4/ZNF703/SULF1/CDKN2B/ASPN/ENG/ZEB1/NRP1/DKK1/HTRA1/DKK3/CREB3L1/ACVRL1/ITGA5/DCN/TGFB3/GREM1/THBS1/FBN1/TMEM204/VASN/TGFB1I1/GATA6/CCBE1/GDF5/FSTL3/TGFB1 56
14 GO:0042060 GO:0042060 wound healing 64/793 439/18614 4.30143208471211e-18 1.46377954623186e-15 1.02135625548454e-15 F3/RHOC/S100A10/PEAR1/DDR2/CSRP1/TGFB2/EMILIN1/PRKCE/FAP/TFPI/COL3A1/SERPINE2/PPARG/TGFBR2/WNT5A/GATA2/PDGFRA/ARHGAP24/IL6ST/F2RL2/LOX/PDGFRB/ADTRP/CDKN1A/CD109/IL6/HSPB1/SERPINE1/CAV1/MIR29A/DGKI/TIMP1/SYTL4/GATA4/PLAT/EXT1/B4GALT1/ANXA1/TLR4/COL5A1/ACTA2/MYOF/SMPD1/CD59/CD44/AHNAK/WNT5B/ACVRL1/ITGA5/ELK3/GAS6/TGFB3/THBS1/ANXA2/FOXC2/COL1A1/C1QTNF1/EMILIN2/THBD/MYL9/COMP/TGFB1/PLAUR 64
15 GO:0048706 GO:0048706 embryonic skeletal system development 34/793 129/18614 4.39309587704639e-18 1.46377954623186e-15 1.02135625548454e-15 TBX15/PRRX1/DLX2/HOXD3/TGFBR2/WNT5A/PDGFRA/HAND2/RUNX2/TWIST1/HOXA3/HOXA4/HOXA5/HOXA9/HOXA11/SULF1/OSR2/EXT1/ZEB1/RBP4/ALX4/HOXC9/MMP14/SIX1/TGFB3/GSC/FOXC2/HOXB2/HOXB3/HOXB4/HOXB5/HOXB7/HOXB9/COL1A1 34
16 GO:0045765 GO:0045765 regulation of angiogenesis 56/793 349/18614 7.023746046602e-18 2.1940426713073e-15 1.53089938502582e-15 GADD45A/F3/ECM1/CHI3L1/TGFB2/AGT/EMILIN1/CYP1B1/SP100/PPARG/TGFBR2/WNT5A/GATA2/VEGFC/MIR145/SPARC/FOXC1/THBS2/TWIST1/IL6/GPNMB/HOXA5/BMPER/HSPB1/HGF/SERPINE1/MIR29A/GATA4/SULF1/KLF4/ENG/NRP1/ADAM12/RNH1/CREB3L1/VEGFB/ACVRL1/ITGA5/DCN/RGCC/GREM1/THBS1/FOXC2/SERPINF1/SPHK1/EMILIN2/PTPRM/GATA6/CCBE1/ANGPTL4/KLF2/HSPB6/C5AR1/RRAS/ADAMTS1/RUNX1 56
17 GO:0071560 GO:0071560 cellular response to transforming growth factor beta stimulus 49/793 274/18614 9.17301716635189e-18 2.69686704690746e-15 1.88174649362996e-15 JUN/CTSK/DDR2/FMOD/TGFB2/EMILIN1/LTBP1/ZEB2/COL3A1/PPARG/TGFBR2/WNT5A/HTRA3/DAB2/MEF2C/LOX/FBN2/NR3C1/TNXB/CD109/COL1A2/CAV2/CAV1/WNT2/ZNF703/ADAM9/PENK/CDKN2B/ASPN/ENG/ZEB1/ACTA2/ANKRD1/HTRA1/DKK3/LPXN/LTBP3/LRRC32/ACVRL1/LTBP2/TGFB3/THBS1/FBN1/VASN/TGFB1I1/COL1A1/GDF5/GDF15/TGFB1 49
18 GO:1901342 GO:1901342 regulation of vasculature development 56/793 355/18614 1.55781047343179e-17 4.32552041456228e-15 3.01814391723949e-15 GADD45A/F3/ECM1/CHI3L1/TGFB2/AGT/EMILIN1/CYP1B1/SP100/PPARG/TGFBR2/WNT5A/GATA2/VEGFC/MIR145/SPARC/FOXC1/THBS2/TWIST1/IL6/GPNMB/HOXA5/BMPER/HSPB1/HGF/SERPINE1/MIR29A/GATA4/SULF1/KLF4/ENG/NRP1/ADAM12/RNH1/CREB3L1/VEGFB/ACVRL1/ITGA5/DCN/RGCC/GREM1/THBS1/FOXC2/SERPINF1/SPHK1/EMILIN2/PTPRM/GATA6/CCBE1/ANGPTL4/KLF2/HSPB6/C5AR1/RRAS/ADAMTS1/RUNX1 56
19 GO:0050673 GO:0050673 epithelial cell proliferation 67/793 488/18614 1.6532024956677e-17 4.34879267018272e-15 3.03438219841944e-15 JUN/F3/ECM1/TGFB2/HLX/DUSP10/ATOH8/LIMS2/FAP/ITGA4/IGFBP5/SCG2/PPARG/WNT5A/COL8A1/GATA2/VEGFC/DAB2/MEF2C/SPARC/RUNX2/CD109/TWIST1/IL6/HOXA5/BMPER/IGFBP3/EGFR/HGF/CAV2/CAV1/WNT2/MIR29A/LOXL2/ZNF703/SNAI2/SULF1/OSR2/HAS2/CDKN2B/B4GALT1/KLF9/ZEB1/NRP1/VSTM4/HTRA1/IGF2/VEGFB/NEAT1/VDR/ACVRL1/RGCC/MMP14/SIX1/THBS1/B2M/FGF7/NUPR1/CDH13/SERPINF1/CCL2/IGFBP4/PTPRM/GDF5/ZFP36/TGFB1/C5AR1 67
20 GO:0031589 GO:0031589 cell-substrate adhesion 56/793 359/18614 2.62147477741715e-17 6.55106546876547e-15 4.57102417767528e-15 COL16A1/CSF1/ITGA10/S100A10/THBS3/EMILIN1/PRKCE/LIMS2/HOXD3/ITGA4/COL3A1/FN1/SNED1/FBLN2/COL8A1/ABI3BP/CCDC80/EPHB3/BST1/EGFLAM/DAB2/SPOCK1/TNXB/SERPINE1/ARHGAP6/DLC1/ADAM9/ANGPT1/HAS2/CDKN2A/ECM2/NRP1/PARVA/CD44/LPXN/EFEMP2/ACVRL1/ITGA5/NTN4/THSD1/GAS6/MMP14/NID2/FBLN5/GREM1/THBS1/ITGA11/CORO2B/CDH11/CDH13/COL1A1/RIN2/COL5A3/RRAS/RAC2/ITGB2 56
21 GO:0060348 GO:0060348 bone development 44/793 235/18614 7.53524220866552e-17 1.79338764566239e-14 1.25134122492776e-14 ECM1/THBS3/DDR2/PAPPA2/MEIS1/COL3A1/TGFBR2/MSX1/BMPR1B/PITX2/PDGFC/PTGER4/GHR/MEF2C/LOX/FOXC1/RUNX2/TWIST1/HOXA11/SFRP4/LRRC17/BGN/CSGALNACT1/SULF1/OSR2/EXT1/HAS2/OGN/ENG/LTBP3/FLI1/TMEM119/MMP14/TGFB3/GPR68/GREM1/FBN1/ANXA2/LRRK1/HOXB4/COL1A1/TGM2/COMP/MAPK11 44
22 GO:0090092 GO:0090092 regulation of transmembrane receptor protein serine/threonine kinase signaling pathway 50/793 301/18614 1.00958096636282e-16 2.29358439540063e-14 1.60035490026796e-14 NBL1/TGFB2/GREM2/EMILIN1/LTBP1/CRIM1/ZEB2/TNFAIP6/PPARG/TGFBR2/WNT5A/MSX1/HTRA3/DAB2/FOXD1/LOX/FBN2/HFE/TNXB/SCUBE3/CD109/BMPER/SFRP4/INHBA/FZD1/CAV2/CAV1/GATA4/ZNF703/SULF1/GDF6/CDKN2B/ASPN/ENG/ZEB1/DKK1/HTRA1/DKK3/ACVRL1/TGFB3/GREM1/THBS1/FBN1/VASN/TGFB1I1/GATA6/GDF5/FSTL3/GDF15/TGFB1 50
23 GO:0048704 GO:0048704 embryonic skeletal system morphogenesis 28/793 95/18614 1.6276837724249e-16 3.53702760633898e-14 2.46797086409322e-14 TBX15/PRRX1/DLX2/HOXD3/TGFBR2/PDGFRA/RUNX2/TWIST1/HOXA3/HOXA4/HOXA5/HOXA9/HOXA11/OSR2/ZEB1/ALX4/HOXC9/MMP14/SIX1/TGFB3/GSC/FOXC2/HOXB2/HOXB3/HOXB4/HOXB5/HOXB7/HOXB9 28
24 GO:0048562 GO:0048562 embryonic organ morphogenesis 49/793 294/18614 1.79650044694288e-16 3.74121218075855e-14 2.61044121961481e-14 TBX15/PRRX1/HLX/EFEMP1/VAX2/BBS5/DLX2/HOXD3/TGFBR2/WNT5A/GATA2/MSX1/PDGFRA/HAND2/MEF2C/FBN2/FOXF2/RUNX2/TBX18/TWIST1/HOXA3/HOXA4/HOXA5/HOXA9/HOXA11/GATA4/OSR2/CTHRC1/ENG/ZEB1/RBP4/MICAL2/ALX4/MFAP5/HOXC9/TBX3/MMP14/SIX1/TGFB3/GSC/FBN1/FOXC2/HOXB2/HOXB3/HOXB4/HOXB5/HOXB7/HOXB9/TSHZ1 49
25 GO:0060485 GO:0060485 mesenchyme development 51/793 320/18614 2.91898784118713e-16 5.83564049210131e-14 4.07183440751704e-14 S100A4/TGFB2/LOXL3/FN1/TGFBR2/WNT5A/MSX1/PITX2/HAND2/GDNF/DAB2/FOXD1/MEF2C/MIR145/PDGFRB/FOXF2/FOXC1/TNXB/TWIST1/IL6/HOXA5/SEMA3C/HGF/WNT2/GATA4/LOXL2/ZNF703/SNAI2/ZFPM2/EXT1/HAS2/ENG/NRP1/DKK1/ACTA2/ACVRL1/TBX5/TBX3/RGCC/SIX1/TGFB3/GSC/GREM1/SEMA7A/VASN/TGFB1I1/FOXC2/COL1A1/TGFB1/DACT3/ADAMTS5 51
26 GO:0090130 GO:0090130 tissue migration 56/793 379/18614 3.13848306359545e-16 6.03313013532694e-14 4.20963335615049e-14 JUN/GADD45A/PTGS2/TGFB2/DUSP10/AGT/CYP1B1/PRKCE/ATOH8/ZEB2/FAP/SCG2/SP100/PPARG/TGFBR2/WNT5A/GATA2/SLIT2/VEGFC/MEF2C/SPARC/ADTRP/DAAM2/MEOX2/BMPER/HSPB1/MIR29A/LOXL2/ADAM9/SNAI2/ANGPT1/ENPP2/HAS2/PRSS3/ANXA1/KLF4/NRP1/VSTM4/ACTA2/LPXN/ACVRL1/DCN/STARD13/RGCC/CLEC14A/GREM1/THBS1/FGF7/CDH13/FOXC2/SERPINF1/PTPRM/CCBE1/RIN2/TGFB1/RRAS 56
27 GO:0010631 GO:0010631 epithelial cell migration 55/793 371/18614 5.03578842568259e-16 9.32180390798578e-14 6.50431464104734e-14 JUN/GADD45A/PTGS2/TGFB2/DUSP10/AGT/CYP1B1/PRKCE/ATOH8/ZEB2/FAP/SCG2/SP100/PPARG/TGFBR2/WNT5A/GATA2/SLIT2/VEGFC/MEF2C/SPARC/ADTRP/DAAM2/MEOX2/BMPER/HSPB1/MIR29A/LOXL2/ADAM9/SNAI2/ANGPT1/ENPP2/HAS2/PRSS3/ANXA1/KLF4/NRP1/VSTM4/LPXN/ACVRL1/DCN/STARD13/RGCC/CLEC14A/GREM1/THBS1/FGF7/CDH13/FOXC2/SERPINF1/PTPRM/CCBE1/RIN2/TGFB1/RRAS 55
28 GO:0090132 GO:0090132 epithelium migration 55/793 374/18614 7.20110491197204e-16 1.28539722678701e-13 8.96889495239224e-14 JUN/GADD45A/PTGS2/TGFB2/DUSP10/AGT/CYP1B1/PRKCE/ATOH8/ZEB2/FAP/SCG2/SP100/PPARG/TGFBR2/WNT5A/GATA2/SLIT2/VEGFC/MEF2C/SPARC/ADTRP/DAAM2/MEOX2/BMPER/HSPB1/MIR29A/LOXL2/ADAM9/SNAI2/ANGPT1/ENPP2/HAS2/PRSS3/ANXA1/KLF4/NRP1/VSTM4/LPXN/ACVRL1/DCN/STARD13/RGCC/CLEC14A/GREM1/THBS1/FGF7/CDH13/FOXC2/SERPINF1/PTPRM/CCBE1/RIN2/TGFB1/RRAS 55
29 GO:0003007 GO:0003007 heart morphogenesis 45/793 262/18614 9.91727838360271e-16 1.70919163314643e-13 1.19259322268152e-13 JUN/TGFB2/FHL2/BBS5/TGFBR2/WNT5A/HEG1/MSX1/SLIT2/PITX2/HAND2/MEF2C/SLIT3/FOXC1/TWIST1/ELN/SEMA3C/FZD1/WNT2/SMARCD3/GATA4/DLC1/SNAI2/ZFPM2/EXT1/HAS2/ENG/COL5A1/NRP1/DKK1/ANKRD1/RBP4/MICAL2/PARVA/ACVRL1/TBX5/TBX3/SIX1/FLRT2/FOXC2/GATA6/ALPK2/TGFB1/ADAMTS1/ADAMTS5 45
30 GO:0048568 GO:0048568 embryonic organ development 61/793 453/18614 1.23861101630904e-15 2.06352595317086e-13 1.43983098141468e-13 TBX15/PRRX1/TGFB2/HLX/EPAS1/EFEMP1/VAX2/BBS5/DLX2/HOXD3/TGFBR2/WNT5A/GATA2/MSX1/PDGFRA/PITX2/HAND2/GDNF/MEF2C/FBN2/FOXF2/FOXC1/RUNX2/TBX18/PRDM1/TWIST1/HOXA3/HOXA4/HOXA5/HOXA9/HOXA11/EGFR/WNT2/GATA4/OSR2/CTHRC1/ZFPM2/ENG/ZEB1/RBP4/IGF2/MICAL2/ALX4/MFAP5/HOXC9/TBX3/MMP14/SIX1/TGFB3/GSC/FBN1/FOXC2/HOXB2/HOXB3/HOXB4/HOXB5/HOXB7/HOXB9/TSHZ1/JUNB/TGFB1 61
31 GO:0060537 GO:0060537 muscle tissue development 58/793 426/18614 3.90542188809413e-15 6.29654793441756e-13 4.39343385917007e-13 HIVEP3/LMNA/RGS4/CSRP1/KCNK2/TGFB2/HLX/AGT/SLC8A1/VAMP5/FHL2/COL3A1/IGFBP5/GPC1/TGFBR2/WNT5A/HEG1/MSX1/PDGFRA/MEF2C/LOX/PITX1/MIR145/PDGFRB/SGCD/FOXC1/TBX18/MEOX2/TWIST1/ELN/SEMA3C/CAV2/CAV1/WNT2/GATA4/MSC/ZFPM2/ENG/DKK1/ANKRD1/RBP4/IGF2/EFEMP2/TENM4/TBX5/TBX3/SGCG/SIX1/GREM1/NUPR1/FOXC2/GATA6/ALPK2/TGFB1/MAFF/MAPK11/RCAN1/RUNX1 58
32 GO:0007389 GO:0007389 pattern specification process 61/793 467/18614 5.15737828602984e-15 8.05518021049286e-13 5.62052442816344e-13 NBL1/WLS/GREM2/MEIS1/VAX2/RFX8/BBS5/DLX2/HOXD8/HOXD3/BHLHE40/TGFBR2/WNT5A/MSX1/BMPR1B/PITX2/HHIP/HAND2/GDNF/FOXD1/MEF2C/FOXC1/DAAM2/TBX18/MEOX2/HOXA3/HOXA4/HOXA5/HOXA9/HOXA10/HOXA11/SEMA3C/WNT2/SMARCD3/GATA4/BMP1/EXT1/ENG/ZEB1/NRP1/DKK1/BICC1/MICAL2/ALX4/ACVRL1/HOXC10/HOXC9/TBX5/TBX3/SIX1/GSC/GREM1/MEIS2/FOXC2/HOXB2/HOXB3/HOXB4/HOXB5/HOXB7/HOXB9/TSHZ1 61
33 GO:0032964 GO:0032964 collagen biosynthetic process 20/793 51/18614 6.82624504587031e-15 1.03386584058363e-12 7.21382769919246e-13 DDR2/EMILIN1/MIR145/PDGFRB/TRAM2/IL6/INHBA/PCOLCE/MIR29A/ENG/COL5A1/VIM/CREB3L1/RGCC/TGFB3/COL1A1/CYGB/TGFB1/RCN3/RUNX1 20
34 GO:0003002 GO:0003002 regionalization 57/793 422/18614 9.67952100741254e-15 1.42288958808964e-12 9.92825173299002e-13 NBL1/WLS/GREM2/VAX2/RFX8/BBS5/DLX2/HOXD8/HOXD3/BHLHE40/TGFBR2/WNT5A/MSX1/BMPR1B/PITX2/HHIP/HAND2/GDNF/FOXD1/MEF2C/FOXC1/DAAM2/TBX18/MEOX2/HOXA3/HOXA4/HOXA5/HOXA9/HOXA10/HOXA11/SEMA3C/WNT2/SMARCD3/GATA4/BMP1/EXT1/ENG/NRP1/DKK1/BICC1/MICAL2/ALX4/ACVRL1/HOXC10/HOXC9/TBX3/SIX1/GSC/GREM1/FOXC2/HOXB2/HOXB3/HOXB4/HOXB5/HOXB7/HOXB9/TSHZ1 57
35 GO:0033002 GO:0033002 muscle cell proliferation 42/793 249/18614 1.75031476492677e-14 2.49944948431543e-12 1.74399783945936e-12 JUN/DDR2/PTGS2/KCNK2/TGFB2/AGT/IGFBP5/PPARG/TGFBR2/NPR3/MEF2C/MIR145/PDGFRB/FOXC1/CDKN1A/GPER1/IL6/IGFBP3/ELN/HGF/CAV2/WNT2/ZFPM2/ANGPT1/OGN/TLR4/RBP4/EFEMP2/TENM4/TBX5/SIX1/TGFB3/THBS1/MMP2/CDH13/FOXC2/GATA6/TGFB1/PTGIR/MAPK11/ADAMTS1/RUNX1 42
36 GO:0048732 GO:0048732 gland development 58/793 441/18614 1.83588632432517e-14 2.54882218027144e-12 1.77844777558166e-12 JUN/WLS/CSF1/TGFB2/HLX/CYP1B1/LIMS2/HOXD3/IGFBP5/SERPINE2/TGFBR2/WNT5A/GATA2/EPHB3/MSX1/PDGFRA/PITX2/HAND2/PITX1/NR3C1/FOXC1/IL6/HOXA3/HOXA5/HOXA9/HOXA11/EGFR/SEMA3C/HGF/CAV1/WNT2/ZNF703/SNAI2/SULF1/EXT1/TG/CDKN2B/ANXA1/TNC/NRP1/ARID5B/IGF2/DKK3/VDR/NTN4/OAS2/TBX3/SIX1/TGFB3/FGF7/MMP2/SERPINF1/HOXB3/HOXB9/GATA6/TGM2/TGFB1/TSPO 58
37 GO:0007179 GO:0007179 transforming growth factor beta receptor signaling pathway 39/793 218/18614 2.11516017959384e-14 2.8571812371919e-12 1.99360616642799e-12 JUN/FMOD/TGFB2/EMILIN1/LTBP1/ZEB2/COL3A1/PPARG/TGFBR2/HTRA3/DAB2/LOX/FBN2/TNXB/CD109/COL1A2/CAV2/CAV1/ZNF703/ADAM9/CDKN2B/ASPN/ENG/ZEB1/HTRA1/DKK3/LPXN/LTBP3/LRRC32/ACVRL1/LTBP2/TGFB3/THBS1/FBN1/VASN/TGFB1I1/GDF5/GDF15/TGFB1 39
38 GO:0050678 GO:0050678 regulation of epithelial cell proliferation 56/793 419/18614 2.64638899614158e-14 3.48069794808306e-12 2.42866668814877e-12 JUN/F3/ECM1/TGFB2/HLX/DUSP10/ATOH8/LIMS2/ITGA4/SCG2/PPARG/WNT5A/GATA2/VEGFC/DAB2/MEF2C/SPARC/RUNX2/CD109/TWIST1/HOXA5/EGFR/CAV2/CAV1/WNT2/MIR29A/ZNF703/SNAI2/SULF1/OSR2/HAS2/CDKN2B/B4GALT1/KLF9/ZEB1/NRP1/HTRA1/IGF2/VEGFB/NEAT1/VDR/ACVRL1/RGCC/SIX1/THBS1/B2M/FGF7/NUPR1/CDH13/SERPINF1/CCL2/PTPRM/GDF5/ZFP36/TGFB1/C5AR1 56
39 GO:0048762 GO:0048762 mesenchymal cell differentiation 42/793 255/18614 4.0891357774038e-14 5.24038477319595e-12 3.65649307167039e-12 S100A4/TGFB2/LOXL3/FN1/TGFBR2/WNT5A/MSX1/PITX2/HAND2/GDNF/DAB2/MEF2C/MIR145/FOXF2/FOXC1/TNXB/TWIST1/IL6/SEMA3C/HGF/WNT2/LOXL2/ZNF703/SNAI2/EXT1/HAS2/ENG/NRP1/TBX5/TBX3/RGCC/SIX1/TGFB3/GSC/GREM1/SEMA7A/VASN/TGFB1I1/FOXC2/COL1A1/TGFB1/DACT3 42
40 GO:0045766 GO:0045766 positive regulation of angiogenesis 35/793 185/18614 8.27009746649305e-14 9.89448197327117e-12 6.90390235619456e-12 F3/ECM1/CHI3L1/EMILIN1/CYP1B1/TGFBR2/WNT5A/GATA2/VEGFC/TWIST1/BMPER/HSPB1/HGF/SERPINE1/MIR29A/GATA4/KLF4/ENG/NRP1/ADAM12/VEGFB/ACVRL1/ITGA5/GREM1/THBS1/FOXC2/SPHK1/EMILIN2/GATA6/CCBE1/ANGPTL4/HSPB6/C5AR1/RRAS/RUNX1 35
41 GO:1904018 GO:1904018 positive regulation of vasculature development 35/793 185/18614 8.27009746649305e-14 9.89448197327117e-12 6.90390235619456e-12 F3/ECM1/CHI3L1/EMILIN1/CYP1B1/TGFBR2/WNT5A/GATA2/VEGFC/TWIST1/BMPER/HSPB1/HGF/SERPINE1/MIR29A/GATA4/KLF4/ENG/NRP1/ADAM12/VEGFB/ACVRL1/ITGA5/GREM1/THBS1/FOXC2/SPHK1/EMILIN2/GATA6/CCBE1/ANGPTL4/HSPB6/C5AR1/RRAS/RUNX1 35
42 GO:0043542 GO:0043542 endothelial cell migration 44/793 283/18614 8.31469073384132e-14 9.89448197327117e-12 6.90390235619456e-12 GADD45A/PTGS2/AGT/CYP1B1/ATOH8/FAP/SCG2/SP100/PPARG/WNT5A/GATA2/SLIT2/VEGFC/MEF2C/SPARC/ADTRP/MEOX2/BMPER/HSPB1/MIR29A/LOXL2/SNAI2/ANGPT1/PRSS3/ANXA1/KLF4/NRP1/VSTM4/LPXN/ACVRL1/DCN/STARD13/RGCC/CLEC14A/GREM1/THBS1/CDH13/FOXC2/SERPINF1/PTPRM/CCBE1/RIN2/TGFB1/RRAS 44
43 GO:0030509 GO:0030509 BMP signaling pathway 34/793 176/18614 9.95702267515032e-14 1.15733021698608e-11 8.07530382442424e-12 NBL1/TGFB2/GREM2/CRIM1/TNFAIP6/PPARG/WNT5A/MSX1/HTRA3/BMPR1B/FOXD1/HFE/SCUBE3/RUNX2/BMPER/SFRP4/INHBA/FZD1/GATA4/SULF1/GDF6/EXT1/ENG/DKK1/HTRA1/ACVRL1/TGFB3/GREM1/FBN1/GATA6/GDF5/FSTL3/COMP/TGFB1 34
44 GO:0010712 GO:0010712 regulation of collagen metabolic process 18/793 46/18614 1.6205101626297e-13 1.84075222564165e-11 1.28438999253402e-11 DDR2/EMILIN1/FAP/MIR145/PDGFRB/IL6/INHBA/MIR29A/ENG/VIM/CREB3L1/RGCC/TGFB3/MFAP4/CYGB/CST3/TGFB1/RUNX1 18
45 GO:0002683 GO:0002683 negative regulation of immune system process 59/793 487/18614 4.06424623615076e-13 4.51402281961811e-11 3.1496719954076e-11 TNFRSF14/NBL1/PTPN22/IFI16/TNFSF4/TGFB2/HLX/DUSP10/EMILIN1/LOXL3/GPR17/TNFAIP6/COL3A1/FN1/PPARG/PARP3/GATA2/SLIT2/TLR6/IL7R/PTGER4/IRF1/DUSP1/ADTRP/HFE/GPER1/TWIST1/GPNMB/INHBA/LRRC17/SNAI2/PAG1/ANGPT1/CD274/PDCD1LG2/ANXA1/SVEP1/TLR4/CD59/LPXN/LRRC32/TAPBPL/OAS1/OAS3/LGALS3/TGFB3/GPR68/RIN3/GREM1/THBS1/FBN1/NLRC5/CD68/CCL2/PRNP/FSTL3/TGFB1/IL4I1/RUNX1 59
46 GO:0001649 GO:0001649 osteoblast differentiation 40/793 250/18614 4.41125249779235e-13 4.79292173564482e-11 3.34427449088926e-11 DDR2/CRIM1/FHL2/TNFAIP6/IGFBP5/TWIST2/PPARG/BMPR1B/HAND2/VEGFC/IL6ST/MEF2C/LOX/FBN2/PDLIM7/SCUBE3/RUNX2/TWIST1/IL6/IGFBP3/HGF/FZD1/CEBPD/SNAI2/PENK/CTHRC1/TNC/IGF2/CREB3L1/TCIRG1/TMEM119/GREM1/ITGA11/SEMA7A/COL1A1/MRC2/ZHX3/JUNB/MAPK11/COL6A1 40
47 GO:0071772 GO:0071772 response to BMP 34/793 187/18614 6.20335196383773e-13 6.45924023234603e-11 4.50695286320053e-11 NBL1/TGFB2/GREM2/CRIM1/TNFAIP6/PPARG/WNT5A/MSX1/HTRA3/BMPR1B/FOXD1/HFE/SCUBE3/RUNX2/BMPER/SFRP4/INHBA/FZD1/GATA4/SULF1/GDF6/EXT1/ENG/DKK1/HTRA1/ACVRL1/TGFB3/GREM1/FBN1/GATA6/GDF5/FSTL3/COMP/TGFB1 34
48 GO:0071773 GO:0071773 cellular response to BMP stimulus 34/793 187/18614 6.20335196383773e-13 6.45924023234603e-11 4.50695286320053e-11 NBL1/TGFB2/GREM2/CRIM1/TNFAIP6/PPARG/WNT5A/MSX1/HTRA3/BMPR1B/FOXD1/HFE/SCUBE3/RUNX2/BMPER/SFRP4/INHBA/FZD1/GATA4/SULF1/GDF6/EXT1/ENG/DKK1/HTRA1/ACVRL1/TGFB3/GREM1/FBN1/GATA6/GDF5/FSTL3/COMP/TGFB1 34
49 GO:0007517 GO:0007517 muscle organ development 48/793 351/18614 8.37408173948438e-13 8.54156337427407e-11 5.9598996354268e-11 HIVEP3/TGFB2/HLX/VAMP5/COL3A1/COL6A3/GPC1/WNT5A/HEG1/MSX1/MEF2C/LOX/PITX1/MIR145/SGCD/FOXC1/LAMA2/MEOX2/TWIST1/ELN/FZD1/CAV2/CAV1/WNT2/MSC/ZFPM2/ENG/ARID5B/ANKRD1/IGF2/ALX4/EFEMP2/CRYAB/TAGLN/SGCG/SIX1/DPF3/GSC/ITGA11/NUPR1/CTF1/ZFHX3/FOXC2/SGCA/TGFB1/SMTN/MAFF/RCAN1 48
50 GO:0007160 GO:0007160 cell-matrix adhesion 38/793 239/18614 2.08654776084026e-12 2.08571314173592e-10 1.45531215403448e-10 COL16A1/CSF1/ITGA10/S100A10/THBS3/EMILIN1/HOXD3/ITGA4/COL3A1/FN1/SNED1/BST1/TNXB/SERPINE1/ARHGAP6/DLC1/ADAM9/CDKN2A/ECM2/NRP1/CD44/EFEMP2/ACVRL1/ITGA5/THSD1/MMP14/NID2/FBLN5/GREM1/THBS1/ITGA11/CORO2B/CDH11/CDH13/RIN2/COL5A3/RRAS/ITGB2 38
51 GO:0060021 GO:0060021 roof of mouth development 23/793 91/18614 2.96472609663152e-12 2.90543157469888e-10 2.02727297381635e-10 PRRX1/TGFB2/LOXL3/TGFBR2/WNT5A/EPHB3/MSX1/PDGFRA/HAND2/FOXF2/MEOX2/TWIST1/INHBA/FZD1/SNAI2/MSC/OSR2/ARID5B/ALX4/LRRC32/TBX3/TGFB3/TSHZ1 23
52 GO:0085029 GO:0085029 extracellular matrix assembly 16/793 42/18614 5.97882741217299e-12 5.74569879197125e-10 4.00907733573445e-10 AGT/EMILIN1/COL3A1/LOX/TNXB/ELN/COL1A2/PLOD3/HAS2/EFEMP2/NTN4/RGCC/GAS6/FBLN5/MFAP4/TGFB1 16
53 GO:0014706 GO:0014706 striated muscle tissue development 39/793 259/18614 6.09287787063778e-12 5.74569879197125e-10 4.00907733573445e-10 LMNA/RGS4/KCNK2/TGFB2/AGT/SLC8A1/FHL2/TGFBR2/WNT5A/HEG1/MSX1/PDGFRA/MEF2C/LOX/PDGFRB/SGCD/FOXC1/TBX18/TWIST1/SEMA3C/WNT2/GATA4/MSC/ZFPM2/ENG/DKK1/ANKRD1/RBP4/TENM4/TBX5/TBX3/SGCG/GREM1/FOXC2/GATA6/ALPK2/TGFB1/MAPK11/RUNX1 39
54 GO:0048771 GO:0048771 tissue remodeling 32/793 181/18614 6.51385526652453e-12 6.02893493001659e-10 4.20670613996019e-10 CTSK/DDR2/AGT/EPAS1/IGFBP5/PPARG/HAND2/NPR3/MEF2C/FOXC1/IL6/GPNMB/HOXA3/SEMA3C/CAV1/TIMP1/CTHRC1/EXT1/LTBP3/TCIRG1/VDR/ACVRL1/TMEM119/MMP14/GREM1/LRRK1/MMP2/FOXC2/CST3/GDF5/TGFB1/RUNX1 32
55 GO:0001837 GO:0001837 epithelial to mesenchymal transition 31/793 172/18614 8.27954109153477e-12 7.52384479554378e-10 5.24978366244109e-10 S100A4/TGFB2/LOXL3/TGFBR2/WNT5A/MSX1/DAB2/MIR145/FOXF2/FOXC1/TNXB/TWIST1/IL6/HGF/WNT2/LOXL2/ZNF703/SNAI2/HAS2/ENG/TBX5/TBX3/RGCC/TGFB3/GSC/GREM1/VASN/TGFB1I1/COL1A1/TGFB1/DACT3 31
56 GO:0045785 GO:0045785 positive regulation of cell adhesion 56/793 482/18614 8.96065167127466e-12 7.99738161661264e-10 5.58019529829567e-10 TNFRSF14/COL16A1/CSF1/PTPN22/S100A10/TNFSF4/TGFB2/HLX/DUSP10/KIF26B/EMILIN1/PRKCE/LIMS2/ITGA4/FN1/FBLN2/TGFBR2/WNT5A/COL8A1/ABI3BP/CCDC80/IL7R/EGFLAM/DAB2/IL6ST/LAMA2/IL6/CAV1/SMARCD3/ADAM9/ANGPT1/HAS2/CD274/PDCD1LG2/ANXA1/ECM2/NRP1/IGF2/CD44/EFEMP2/ITGA5/B2M/ZFHX3/CDH13/FOXC2/CCL2/EMILIN2/RIN2/TGM2/FSTL3/PLAUR/RRAS/IL4I1/LGALS1/RUNX1/ITGB2 56
57 GO:0003206 GO:0003206 cardiac chamber morphogenesis 26/793 126/18614 1.70826556425032e-11 1.49787917370581e-09 1.04514936553302e-09 TGFB2/FHL2/TGFBR2/WNT5A/HEG1/SLIT2/HAND2/MEF2C/SLIT3/FOXC1/SEMA3C/FZD1/WNT2/SMARCD3/GATA4/ZFPM2/ENG/NRP1/RBP4/PARVA/TBX5/TBX3/FOXC2/GATA6/TGFB1/ADAMTS1 26
58 GO:0060349 GO:0060349 bone morphogenesis 23/793 99/18614 1.9481885113454e-11 1.67880106546626e-09 1.17138811943508e-09 THBS3/PAPPA2/COL3A1/TGFBR2/MSX1/BMPR1B/GHR/MEF2C/FOXC1/RUNX2/TWIST1/HOXA11/SFRP4/CSGALNACT1/OSR2/EXT1/HAS2/LTBP3/TMEM119/MMP14/TGFB3/COL1A1/COMP 23
59 GO:0010632 GO:0010632 regulation of epithelial cell migration 41/793 295/18614 2.38810535772542e-11 2.0230085725274e-09 1.41155986621665e-09 JUN/GADD45A/PTGS2/TGFB2/DUSP10/AGT/PRKCE/ATOH8/SP100/PPARG/TGFBR2/WNT5A/GATA2/SLIT2/VEGFC/MEF2C/SPARC/MEOX2/BMPER/HSPB1/MIR29A/ADAM9/ANGPT1/ENPP2/HAS2/ANXA1/KLF4/NRP1/ACVRL1/DCN/STARD13/RGCC/THBS1/FGF7/FOXC2/SERPINF1/PTPRM/CCBE1/RIN2/TGFB1/RRAS 41
60 GO:0007162 GO:0007162 negative regulation of cell adhesion 42/793 312/18614 3.85189949219632e-11 3.20863227699953e-09 2.23883210835902e-09 TNFRSF14/PTPN22/TNFSF4/HLX/CYP1B1/LOXL3/SERPINE2/IRF1/TGFBI/SPOCK1/DUSP1/ADTRP/HFE/GPNMB/SERPINE1/ARHGAP6/DLC1/ZNF703/SNAI2/PAG1/ANGPT1/CD274/PDCD1LG2/CDKN2A/ANXA1/KLF4/LPXN/LRRC32/ACVRL1/RGCC/MMP14/LGALS3/THBS1/CORO2B/MMP2/CDH13/COL1A1/C1QTNF1/PRNP/TGFB1/IL4I1/RUNX1 42
61 GO:0032965 GO:0032965 regulation of collagen biosynthetic process 15/793 41/18614 5.46188267698523e-11 4.47516223271675e-09 3.12255691265782e-09 DDR2/EMILIN1/MIR145/PDGFRB/IL6/INHBA/MIR29A/ENG/VIM/CREB3L1/RGCC/TGFB3/CYGB/TGFB1/RUNX1 15
62 GO:1901654 GO:1901654 response to ketone 33/793 208/18614 6.33008265020202e-11 5.00790878370757e-09 3.49428230248377e-09 PTGFR/TNFSF4/TGFB2/CYP1B1/PRKCE/SLIT2/IGFBP7/PTGER4/NR3C1/SLIT3/SGK1/HOXA9/HOXA11/CAV1/PLAT/FBXO32/KLF9/PAPPA/AKR1C2/FIBIN/FOSL1/POSTN/GAS6/PTGER2/TGFB3/THBS1/NQO1/SERPINF1/PPP1R9B/KLF2/TGFB1/FOSB/TSPO 33
63 GO:0035987 GO:0035987 endodermal cell differentiation 16/793 48/18614 6.36895551260301e-11 5.00790878370757e-09 3.49428230248377e-09 ITGA4/COL5A2/FN1/COL7A1/COL8A1/COL12A1/INHBA/COL5A1/DKK1/MMP8/ITGA5/MMP14/MMP2/GATA6/ITGB2/COL6A1 16
64 GO:0048738 GO:0048738 cardiac muscle tissue development 36/793 243/18614 6.41268831847308e-11 5.00790878370757e-09 3.49428230248377e-09 LMNA/RGS4/KCNK2/TGFB2/AGT/SLC8A1/FHL2/TGFBR2/WNT5A/HEG1/MSX1/PDGFRA/MEF2C/PDGFRB/SGCD/FOXC1/TBX18/WNT2/GATA4/MSC/ZFPM2/ENG/DKK1/ANKRD1/RBP4/TENM4/TBX5/TBX3/SGCG/GREM1/FOXC2/GATA6/ALPK2/TGFB1/MAPK11/RUNX1 36
65 GO:0048145 GO:0048145 regulation of fibroblast proliferation 21/793 87/18614 6.74539304108563e-11 5.18668837220707e-09 3.61902625831849e-09 JUN/S100A6/DDR2/AGT/FOSL2/FN1/WNT5A/PDGFRA/PDGFC/FBXO4/PDGFRB/CDKN1A/EGFR/CAV1/WNT2/PARP10/FTH1/CD248/GAS6/NUPR1/SPHK1 21
66 GO:0060393 GO:0060393 regulation of pathway-restricted SMAD protein phosphorylation 18/793 63/18614 7.51664560004938e-11 5.69215071349194e-09 3.97171401482673e-09 TGFB2/EMILIN1/PPARG/TGFBR2/DAB2/HFE/TNXB/BMPER/INHBA/GDF6/ENG/DKK1/ACVRL1/TGFB3/GREM1/GDF5/GDF15/TGFB1 18
67 GO:0003205 GO:0003205 cardiac chamber development 29/793 166/18614 8.57499067442463e-11 6.39668707324989e-09 4.46330622221034e-09 KCNK2/TGFB2/FHL2/TGFBR2/WNT5A/HEG1/SLIT2/HAND2/ADAMTS6/MEF2C/SLIT3/FOXC1/PRDM1/SEMA3C/FZD1/WNT2/SMARCD3/GATA4/ZFPM2/ENG/NRP1/RBP4/PARVA/TBX5/TBX3/FOXC2/GATA6/TGFB1/ADAMTS1 29
68 GO:0010810 GO:0010810 regulation of cell-substrate adhesion 34/793 222/18614 8.72292751159062e-11 6.40353537283011e-09 4.46808464231717e-09 COL16A1/CSF1/S100A10/EMILIN1/PRKCE/LIMS2/FN1/FBLN2/COL8A1/ABI3BP/CCDC80/BST1/EGFLAM/DAB2/SPOCK1/SERPINE1/ARHGAP6/DLC1/HAS2/CDKN2A/ECM2/NRP1/EFEMP2/ACVRL1/ITGA5/MMP14/GREM1/THBS1/CORO2B/CDH13/COL1A1/RIN2/RRAS/RAC2 34
69 GO:0050680 GO:0050680 negative regulation of epithelial cell proliferation 30/793 177/18614 8.84041498049775e-11 6.40353537283011e-09 4.46808464231717e-09 TGFB2/DUSP10/ATOH8/LIMS2/SCG2/PPARG/WNT5A/DAB2/MEF2C/SPARC/CD109/CAV2/CAV1/SNAI2/SULF1/CDKN2B/B4GALT1/KLF9/ZEB1/VDR/ACVRL1/RGCC/THBS1/B2M/NUPR1/SERPINF1/CCL2/PTPRM/GDF5/TGFB1 30
70 GO:0001706 GO:0001706 endoderm formation 17/793 57/18614 1.19197076609627e-10 8.5106712699274e-09 5.93834458357437e-09 ITGA4/COL5A2/FN1/COL7A1/COL8A1/DUSP1/COL12A1/INHBA/COL5A1/DKK1/MMP8/ITGA5/MMP14/MMP2/GATA6/ITGB2/COL6A1 17
71 GO:0001704 GO:0001704 formation of primary germ layer 25/793 127/18614 1.2247599073577e-10 8.62161974221663e-09 6.0157591891417e-09 WLS/ATOH8/ITGA4/COL5A2/FN1/COL7A1/WNT5A/COL8A1/MIR145/DUSP1/FOXC1/COL12A1/HOXA11/INHBA/KLF4/COL5A1/DKK1/MMP8/ITGA5/MMP14/MMP2/FOXC2/GATA6/ITGB2/COL6A1 25
72 GO:0030510 GO:0030510 regulation of BMP signaling pathway 24/793 118/18614 1.41000926267422e-10 9.78781429839688e-09 6.82947468894692e-09 NBL1/GREM2/CRIM1/TNFAIP6/PPARG/WNT5A/MSX1/HTRA3/FOXD1/SCUBE3/BMPER/SFRP4/FZD1/GATA4/SULF1/ENG/DKK1/HTRA1/ACVRL1/GREM1/FBN1/GATA6/GDF5/FSTL3 24
73 GO:0003151 GO:0003151 outflow tract morphogenesis 20/793 82/18614 1.56714565786316e-10 1.07295808191782e-08 7.48659490194757e-09 JUN/TGFB2/TGFBR2/WNT5A/PITX2/HAND2/MEF2C/FOXC1/TWIST1/ELN/SEMA3C/FZD1/ZFPM2/ENG/NRP1/PARVA/TBX3/SIX1/FOXC2/GATA6 20
74 GO:0035051 GO:0035051 cardiocyte differentiation 28/793 161/18614 2.02111012405356e-10 1.36506870270536e-08 9.52480489472183e-09 LMNA/RGS4/TGFB2/AGT/SLC8A1/FHL2/PDGFRA/PITX2/HAND2/MEF2C/MIR145/PDGFRB/SGCD/TBX18/GPER1/TWIST1/INHBA/EGFR/SEMA3C/GATA4/DKK1/TENM4/TBX5/TBX3/GREM1/GATA6/ALPK2/TGFB1 28
75 GO:0060389 GO:0060389 pathway-restricted SMAD protein phosphorylation 18/793 67/18614 2.31585581102358e-10 1.54328631246611e-08 1.07683232307665e-08 TGFB2/EMILIN1/PPARG/TGFBR2/DAB2/HFE/TNXB/BMPER/INHBA/GDF6/ENG/DKK1/ACVRL1/TGFB3/GREM1/GDF5/GDF15/TGFB1 18
76 GO:0001654 GO:0001654 eye development 46/793 385/18614 2.69134812794625e-10 1.76991551887833e-08 1.23496348308669e-08 JUN/TGFB2/CYP1B1/EFEMP1/MEIS1/VAX2/DLX2/COL5A2/TGFBR2/WNT5A/COL8A1/PDGFRA/BMPR1B/PITX2/MAB21L2/FBN2/PDGFRB/FOXF2/FOXC1/PRDM1/TWIST1/INHBA/EGFR/WNT2/SMARCD3/OSR2/KLF4/COL5A1/VIM/ZEB1/NRP1/VSTM4/RBP4/FJX1/TCIRG1/CRYAB/WNT5B/CACNA1C/MFAP5/ACVRL1/MAB21L1/MEIS2/FBN1/FOXC2/SERPINF1/PTPRM 46
77 GO:0090100 GO:0090100 positive regulation of transmembrane receptor protein serine/threonine kinase signaling pathway 24/793 122/18614 2.91667386632859e-10 1.89318649141692e-08 1.32097614752517e-08 TGFB2/ZEB2/PPARG/TGFBR2/MSX1/DAB2/FOXD1/HFE/TNXB/SCUBE3/INHBA/GATA4/SULF1/GDF6/CDKN2B/ENG/ACVRL1/TGFB3/THBS1/TGFB1I1/GATA6/GDF5/GDF15/TGFB1 24
78 GO:0048144 GO:0048144 fibroblast proliferation 22/793 103/18614 3.05657089157593e-10 1.95855657898673e-08 1.36658830820392e-08 JUN/S100A6/DDR2/AGT/FOSL2/COL3A1/FN1/WNT5A/PDGFRA/PDGFC/FBXO4/PDGFRB/CDKN1A/EGFR/CAV1/WNT2/PARP10/FTH1/CD248/GAS6/NUPR1/SPHK1 22
79 GO:0030324 GO:0030324 lung development 30/793 186/18614 3.10639422011441e-10 1.96528586229517e-08 1.37128368437562e-08 CHI3L1/EPAS1/LOXL3/COL3A1/IGFBP5/TGFBR2/WNT5A/HEG1/MME/PDGFRA/HHIP/LOX/PDGFRB/ADAMTS2/HOXA5/PLOD3/WNT2/ZFPM2/EXT1/RBP4/LTBP3/TBX5/MMP14/TGFB3/FGF7/GATA6/CCBE1/CTSZ/KLF2/RCN3 30
80 GO:0048146 GO:0048146 positive regulation of fibroblast proliferation 16/793 53/18614 3.43335324447613e-10 2.14498743948646e-08 1.49667096038808e-08 JUN/S100A6/DDR2/AGT/FOSL2/FN1/WNT5A/PDGFRA/PDGFC/PDGFRB/CDKN1A/EGFR/WNT2/CD248/GAS6/SPHK1 16
81 GO:0022612 GO:0022612 gland morphogenesis 24/793 123/18614 3.48021320663548e-10 2.14742044527952e-08 1.4983685969569e-08 CSF1/TGFB2/LIMS2/IGFBP5/TGFBR2/WNT5A/NR3C1/IL6/EGFR/SEMA3C/HGF/CAV1/SNAI2/SULF1/TNC/NRP1/VDR/NTN4/TBX3/TGFB3/FGF7/MMP2/TGM2/TGFB1 24
82 GO:0150063 GO:0150063 visual system development 46/793 389/18614 3.79375305302542e-10 2.31233875110013e-08 1.61344080419425e-08 JUN/TGFB2/CYP1B1/EFEMP1/MEIS1/VAX2/DLX2/COL5A2/TGFBR2/WNT5A/COL8A1/PDGFRA/BMPR1B/PITX2/MAB21L2/FBN2/PDGFRB/FOXF2/FOXC1/PRDM1/TWIST1/INHBA/EGFR/WNT2/SMARCD3/OSR2/KLF4/COL5A1/VIM/ZEB1/NRP1/VSTM4/RBP4/FJX1/TCIRG1/CRYAB/WNT5B/CACNA1C/MFAP5/ACVRL1/MAB21L1/MEIS2/FBN1/FOXC2/SERPINF1/PTPRM 46
83 GO:0060541 GO:0060541 respiratory system development 32/793 211/18614 4.04364294989167e-10 2.43495511609139e-08 1.69899671439329e-08 CHI3L1/EPAS1/LOXL3/COL3A1/IGFBP5/TGFBR2/WNT5A/HEG1/MME/PDGFRA/HHIP/LOX/PDGFRB/ADAMTS2/HOXA5/PLOD3/WNT2/MSC/ZFPM2/EXT1/RBP4/LTBP3/TBX5/MMP14/SIX1/TGFB3/FGF7/GATA6/CCBE1/CTSZ/KLF2/RCN3 32
84 GO:0001819 GO:0001819 positive regulation of cytokine production 53/793 489/18614 4.32016556397809e-10 2.57049851056696e-08 1.79357249542098e-08 TNFRSF14/F3/PTPN22/IFI16/TNFSF4/PTGS2/CHI3L1/AGT/CYP1B1/IL1R1/IL18R1/RFTN1/WNT5A/HEG1/SPON2/TLR6/PTGER4/IL6ST/PDE4D/IRF1/MIR145/TNXB/TWIST1/IL6/HSPB1/HGF/SERPINE1/GATA4/SULF1/LY96/CD274/ANXA1/TLR4/MMP8/CASP1/LUM/OAS1/OAS3/OAS2/RGCC/THBS1/B2M/SEMA7A/IL16/SPHK1/GATA6/CCBE1/TICAM1/TGFB1/BCL3/C5AR1/MAPK11/RUNX1 53
85 GO:0043010 GO:0043010 camera-type eye development 42/793 338/18614 4.88221631469861e-10 2.87074319304278e-08 2.0030690588974e-08 JUN/TGFB2/CYP1B1/EFEMP1/MEIS1/VAX2/DLX2/TGFBR2/WNT5A/COL8A1/PDGFRA/BMPR1B/PITX2/MAB21L2/FBN2/PDGFRB/FOXF2/FOXC1/PRDM1/TWIST1/INHBA/EGFR/WNT2/SMARCD3/OSR2/KLF4/VIM/ZEB1/NRP1/VSTM4/RBP4/FJX1/TCIRG1/CRYAB/WNT5B/CACNA1C/ACVRL1/MAB21L1/FBN1/FOXC2/SERPINF1/PTPRM 42
86 GO:0001935 GO:0001935 endothelial cell proliferation 31/793 201/18614 4.96201682642952e-10 2.8837395463366e-08 2.01213730060722e-08 JUN/F3/ECM1/ATOH8/ITGA4/SCG2/PPARG/WNT5A/GATA2/VEGFC/MEF2C/SPARC/BMPER/CAV2/CAV1/WNT2/MIR29A/LOXL2/SULF1/NRP1/VSTM4/IGF2/VEGFB/ACVRL1/RGCC/MMP14/THBS1/FGF7/CDH13/CCL2/PTPRM 31
87 GO:0035107 GO:0035107 appendage morphogenesis 26/793 146/18614 5.25408592377235e-10 2.9675236783044e-08 2.07059791205376e-08 PRRX1/TGFB2/AFF3/COL3A1/WNT5A/MBNL1/MSX1/HAND2/FBN2/PITX1/RUNX2/TWIST1/HOXA9/HOXA10/HOXA11/SEMA3C/OSR2/EXT1/DKK1/ALX4/CACNA1C/HOXC10/TBX5/TBX3/GREM1/GDF5 26
88 GO:0035108 GO:0035108 limb morphogenesis 26/793 146/18614 5.25408592377235e-10 2.9675236783044e-08 2.07059791205376e-08 PRRX1/TGFB2/AFF3/COL3A1/WNT5A/MBNL1/MSX1/HAND2/FBN2/PITX1/RUNX2/TWIST1/HOXA9/HOXA10/HOXA11/SEMA3C/OSR2/EXT1/DKK1/ALX4/CACNA1C/HOXC10/TBX5/TBX3/GREM1/GDF5 26
89 GO:0030323 GO:0030323 respiratory tube development 30/793 190/18614 5.28430586972973e-10 2.9675236783044e-08 2.07059791205376e-08 CHI3L1/EPAS1/LOXL3/COL3A1/IGFBP5/TGFBR2/WNT5A/HEG1/MME/PDGFRA/HHIP/LOX/PDGFRB/ADAMTS2/HOXA5/PLOD3/WNT2/ZFPM2/EXT1/RBP4/LTBP3/TBX5/MMP14/TGFB3/FGF7/GATA6/CCBE1/CTSZ/KLF2/RCN3 30
90 GO:0002237 GO:0002237 response to molecule of bacterial origin 44/793 366/18614 5.44565647649585e-10 3.02415456328069e-08 2.11011226978137e-08 PTGFR/CSF1/PTPN22/TNFSF4/PTGS2/DUSP10/CAPN2/PRKCE/WNT5A/PLSCR4/SPON2/TLR6/CXCL1/CXCL2/TNIP3/PTGER4/MEF2C/IL6/SERPINE1/ADAM9/PENK/LY96/CD274/PDCD1LG2/TLR4/VIM/ANKRD1/CASP1/CARD16/PTGER2/BDKRB1/B2M/LOXL1/NQO1/CD68/CCL2/THBD/TICAM1/ZFP36/TGFB1/PTGIR/C5AR1/SSC5D/TSPO 44
91 GO:0048880 GO:0048880 sensory system development 46/793 395/18614 6.28414218043377e-10 3.45144424371516e-08 2.40825483444501e-08 JUN/TGFB2/CYP1B1/EFEMP1/MEIS1/VAX2/DLX2/COL5A2/TGFBR2/WNT5A/COL8A1/PDGFRA/BMPR1B/PITX2/MAB21L2/FBN2/PDGFRB/FOXF2/FOXC1/PRDM1/TWIST1/INHBA/EGFR/WNT2/SMARCD3/OSR2/KLF4/COL5A1/VIM/ZEB1/NRP1/VSTM4/RBP4/FJX1/TCIRG1/CRYAB/WNT5B/CACNA1C/MFAP5/ACVRL1/MAB21L1/MEIS2/FBN1/FOXC2/SERPINF1/PTPRM 46
92 GO:0001763 GO:0001763 morphogenesis of a branching structure 31/793 203/18614 6.37922993388382e-10 3.46558600103819e-08 2.41812228500653e-08 CSF1/AGT/DLX2/TGFBR2/WNT5A/SLIT2/HHIP/GDNF/FOXD1/PRDM1/HOXA5/HOXA11/SEMA3C/HGF/WNT2/SNAI2/SULF1/EXT1/ENG/NRP1/VDR/NTN4/TBX3/MMP14/SIX1/GREM1/FGF7/FOXC2/HOXB7/TGM2/CTSZ 31
93 GO:0043410 GO:0043410 positive regulation of MAPK cascade 53/793 495/18614 6.70923657022843e-10 3.60567358903244e-08 2.51586878971894e-08 JUN/GADD45A/PTPN22/DDR2/CHI3L1/TGFB2/PRKCE/SH3RF3/WNT5A/TLR6/PDGFRA/PDGFC/HAND2/GHR/MEF2C/PDGFRB/TPBG/GPER1/IL6/GPNMB/BMPER/INHBA/IGFBP3/EGFR/HGF/CAV2/GATA4/ADAM9/GDF6/ANGPT1/LPAR1/TLR4/NRP1/DKK1/ACTA2/IGF2/CD44/MMP8/LTBR/IGFBP6/GAS6/TGFB3/THBS1/TNFAIP8L3/SEMA7A/CCL2/IGFBP4/SPHK1/C1QTNF1/GADD45B/GDF15/TGFB1/C5AR1 53
94 GO:0042692 GO:0042692 muscle cell differentiation 47/793 410/18614 6.9017135520541e-10 3.66965578012408e-08 2.5605125417643e-08 LMNA/RGS4/CSRP1/CAPN2/AGT/SLC8A1/FHL2/IGFBP5/MSX1/PDGFRA/MEF2C/LOX/MIR145/PDGFRB/SGCD/TBX18/LAMA2/SYNE1/GPER1/CAV2/SMARCD3/GATA4/ENG/ZEB1/DKK1/ANKRD1/ADAM12/IGF2/EFEMP2/WNT5B/TMEM119/TBX5/TBX3/MMP14/SIX1/GREM1/TMEM204/GATA6/ALPK2/MYL9/GDF15/COMP/TGFB1/EHD2/MAPK11/ADAMTS5/RCAN1 47
95 GO:0048736 GO:0048736 appendage development 29/793 182/18614 8.23479597725759e-10 4.28724065565973e-08 2.99143410884368e-08 PRRX1/TGFB2/AFF3/COL3A1/WNT5A/MBNL1/MSX1/PITX2/HAND2/FBN2/PITX1/RUNX2/MEOX2/TWIST1/HOXA9/HOXA10/HOXA11/SEMA3C/OSR2/EXT1/DKK1/ALX4/CACNA1C/HOXC10/TBX5/TBX3/GREM1/GDF5/COMP 29
96 GO:0060173 GO:0060173 limb development 29/793 182/18614 8.23479597725759e-10 4.28724065565973e-08 2.99143410884368e-08 PRRX1/TGFB2/AFF3/COL3A1/WNT5A/MBNL1/MSX1/PITX2/HAND2/FBN2/PITX1/RUNX2/MEOX2/TWIST1/HOXA9/HOXA10/HOXA11/SEMA3C/OSR2/EXT1/DKK1/ALX4/CACNA1C/HOXC10/TBX5/TBX3/GREM1/GDF5/COMP 29
97 GO:0040013 GO:0040013 negative regulation of locomotion 48/793 427/18614 8.7633796280232e-10 4.51539911142886e-08 3.15063230685197e-08 NBL1/PODN/GADD45A/DUSP10/EMILIN1/CYP1B1/TNFAIP6/COL3A1/IGFBP5/SP100/PPARG/WNT5A/SLIT2/PTGER4/MEF2C/MIR145/DUSP1/ADTRP/MEOX2/IGFBP3/SEMA3C/SERPINE1/MIR29A/TIMP1/DLC1/SULF1/KLF4/ENG/NRP1/ARHGDIB/ACVRL1/NAV3/DCN/TBX5/STARD13/RGCC/RIN3/GREM1/THBS1/SEMA7A/CDH11/SERPINF1/CCL2/CYGB/EMILIN2/PTPRM/TGFB1/RRAS 48
98 GO:0007369 GO:0007369 gastrulation 30/793 196/18614 1.13868072757616e-09 5.80727171063843e-08 4.05204001123505e-08 WLS/ATOH8/ITGA4/COL5A2/FN1/TGFBR2/COL7A1/WNT5A/COL8A1/MIR145/DUSP1/FOXC1/COL12A1/HOXA11/INHBA/EXT1/KLF4/COL5A1/DKK1/TENM4/MMP8/WNT5B/ITGA5/MMP14/GSC/MMP2/FOXC2/GATA6/ITGB2/COL6A1 30
99 GO:0030326 GO:0030326 embryonic limb morphogenesis 23/793 120/18614 1.17207220516825e-09 5.82722096634782e-08 4.06595965997143e-08 PRRX1/TGFB2/AFF3/WNT5A/MBNL1/MSX1/HAND2/FBN2/PITX1/RUNX2/TWIST1/HOXA9/HOXA10/HOXA11/OSR2/DKK1/ALX4/CACNA1C/HOXC10/TBX5/TBX3/GREM1/GDF5 23
100 GO:0035113 GO:0035113 embryonic appendage morphogenesis 23/793 120/18614 1.17207220516825e-09 5.82722096634782e-08 4.06595965997143e-08 PRRX1/TGFB2/AFF3/WNT5A/MBNL1/MSX1/HAND2/FBN2/PITX1/RUNX2/TWIST1/HOXA9/HOXA10/HOXA11/OSR2/DKK1/ALX4/CACNA1C/HOXC10/TBX5/TBX3/GREM1/GDF5 23