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Models
:
AlyssaS
/
PhenPred
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[305123]
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Initial commit
Authored by:
AlyssaS
2025-04-19
Browse code at this revision
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figure/MOSA_Overview.pdf
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figure/MOSA_Overview.png
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figure/dipvae_lossterm.png
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notebooks/metabolomics_validation.ipynb
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notebooks/process_shap.ipynb
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notebooks/shap_analysis_drug_response.ipynb
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notebooks/shap_analysis_latent.ipynb
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notebooks/two_vs_seven_omics_analysis.ipynb
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reports/PhenotypePrediction_Drug_Boxplot.png
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reports/PhenotypePrediction_Drug_Boxplot_Skew.png
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reports/__init__.py
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reports/nlfit_scatter.png
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reports/vae/20231023_092657_reconstructed_gexp_correlation_boxplot.pdf
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reports/vae/20231023_092657_reconstructed_gexp_correlation_boxplot.png
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reports/vae/20241211_171745_reconstructed_gexp_correlation_boxplot.pdf
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reports/vae/20241211_171745_reconstructed_gexp_correlation_boxplot.png
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reports/vae/SupplementaryTables/SupplementaryTable1.xlsx
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reports/vae/SupplementaryTables/SupplementaryTable2.csv
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reports/vae/SupplementaryTables/SupplementaryTable3.csv
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reports/vae/SupplementaryTables/SupplementaryTable4.xlsx
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reports/vae/SupplementaryTables/SupplementaryTable5.xlsx
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reports/vae/SupplementaryTables/SupplementaryTable6.xlsx
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reports/vae/SupplementaryTables/SupplementaryTable7.xlsx
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reports/vae/allAUCs.csv
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reports/vae/allAUCsBarPlotv2.pdf
figure/MOSA_Overview.pdf
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figure/MOSA_Overview.png
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figure/dipvae_lossterm.png
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notebooks/metabolomics_validation.ipynb
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notebooks/process_shap.ipynb
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notebooks/shap_analysis_drug_response.ipynb
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notebooks/shap_analysis_latent.ipynb
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notebooks/two_vs_seven_omics_analysis.ipynb
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reports/PhenotypePrediction_Drug_Boxplot.png
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reports/PhenotypePrediction_Drug_Boxplot_Skew.png
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reports/__init__.py
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reports/nlfit_scatter.png
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reports/vae/20231023_092657_reconstructed_gexp_correlation_boxplot.pdf
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reports/vae/20231023_092657_reconstructed_gexp_correlation_boxplot.png
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reports/vae/20241211_171745_reconstructed_gexp_correlation_boxplot.pdf
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reports/vae/20241211_171745_reconstructed_gexp_correlation_boxplot.png
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reports/vae/SupplementaryTables/SupplementaryTable1.xlsx
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reports/vae/SupplementaryTables/SupplementaryTable2.csv
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reports/vae/SupplementaryTables/SupplementaryTable3.csv
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reports/vae/SupplementaryTables/SupplementaryTable4.xlsx
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reports/vae/SupplementaryTables/SupplementaryTable5.xlsx
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reports/vae/SupplementaryTables/SupplementaryTable6.xlsx
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reports/vae/SupplementaryTables/SupplementaryTable7.xlsx
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reports/vae/allAUCs.csv
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reports/vae/allAUCsBarPlotv2.pdf
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